Protein–RNA interactions for Protein: P53972

RCM1, 25S rRNA (cytosine(2278)-C(5))-methyltransferase, yeastyeast

Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RCM1P53972 YML009W-BYML009W-B 477 nt27.88■■■□□ 2.05
RCM1P53972 NSR1YGR159C 1245 nt27.24■■□□□ 1.95
RCM1P53972 NOP1YDL014W 984 nt27.19■■□□□ 1.94
RCM1P53972 YKL036CYKL036C 393 nt25.57■■□□□ 1.68
RCM1P53972 Q0297Q0297 156 nt24.01■■□□□ 1.43
RCM1P53972 YJL027CYJL027C 417 nt23.96■■□□□ 1.43
RCM1P53972 MDJ1YFL016C 1536 nt23.88■■□□□ 1.41
RCM1P53972 SRX1YKL086W 384 nt23.81■■□□□ 1.4
RCM1P53972 SCS3YGL126W 1143 nt23.57■■□□□ 1.36
RCM1P53972 YCR051WYCR051W 669 nt22.65■■□□□ 1.22
RCM1P53972 YOL085CYOL085C 342 nt22.18■■□□□ 1.14
RCM1P53972 PKP1YIL042C 1185 nt21.84■■□□□ 1.09
RCM1P53972 RPP1BYDL130W 321 nt21.55■■□□□ 1.04
RCM1P53972 SCJ1YMR214W 1134 nt21.34■■□□□ 1.01
RCM1P53972 DBP2YNL112W 1641 nt21.33■■□□□ 1
RCM1P53972 TRN1tP(UGG)A 72 nt21.3■■□□□ 1
RCM1P53972 SUF9tP(UGG)F 72 nt21.3■■□□□ 1
RCM1P53972 SUF8tP(UGG)H 72 nt21.3■■□□□ 1
RCM1P53972 tP(UGG)LtP(UGG)L 72 nt21.3■■□□□ 1
RCM1P53972 SUF7tP(UGG)M 72 nt21.3■■□□□ 1
RCM1P53972 tP(UGG)N1tP(UGG)N1 72 nt21.3■■□□□ 1
RCM1P53972 tP(UGG)N2tP(UGG)N2 72 nt21.3■■□□□ 1
RCM1P53972 tP(UGG)O1tP(UGG)O1 72 nt21.3■■□□□ 1
RCM1P53972 SUF11tP(UGG)O2 72 nt21.3■■□□□ 1
RCM1P53972 ATS1YAL020C 1002 nt21.19■□□□□ 0.98
RCM1P53972 CCC1YLR220W 969 nt21.1■□□□□ 0.97
RCM1P53972 PET122YER153C 765 nt20.59■□□□□ 0.89
RCM1P53972 SCR1SCR1 522 nt20.38■□□□□ 0.85
RCM1P53972 tP(UGG)O3tP(UGG)O3 72 nt20.29■□□□□ 0.84
RCM1P53972 YBR190WYBR190W 312 nt20.14■□□□□ 0.81
RCM1P53972 RRN5YLR141W 1092 nt20.02■□□□□ 0.8
RCM1P53972 RVS167YDR388W 1449 nt20.01■□□□□ 0.79
RCM1P53972 RTC3YHR087W 336 nt19.74■□□□□ 0.75
RCM1P53972 RSB1YOR049C 1065 nt19.73■□□□□ 0.75
RCM1P53972 YER088W-BYER088W-B 147 nt19.65■□□□□ 0.74
RCM1P53972 YDJ1YNL064C 1230 nt19.59■□□□□ 0.73
RCM1P53972 PST2YDR032C 597 nt19.56■□□□□ 0.72
RCM1P53972 SHR5YOL110W 714 nt19.47■□□□□ 0.71
RCM1P53972 GAR1YHR089C 618 nt19.13■□□□□ 0.65
RCM1P53972 YKL097CYKL097C 411 nt18.99■□□□□ 0.63
RCM1P53972 DEP1YAL013W 1218 nt18.84■□□□□ 0.61
RCM1P53972 SHU1YHL006C 453 nt18.69■□□□□ 0.58
RCM1P53972 URN1YPR152C 1398 nt18.68■□□□□ 0.58
RCM1P53972 YNL208WYNL208W 600 nt18.5■□□□□ 0.55
RCM1P53972 TIR1YER011W 765 nt18.46■□□□□ 0.55
RCM1P53972 RPN10YHR200W 807 nt18.4■□□□□ 0.54
RCM1P53972 YAL037C-BYAL037C-B 975 nt18.29■□□□□ 0.52
RCM1P53972 OPI9YLR338W 858 nt18.29■□□□□ 0.52
RCM1P53972 YOR139CYOR139C 393 nt18.23■□□□□ 0.51
RCM1P53972 SSA1YAL005C 1929 nt18.19■□□□□ 0.5
RCM1P53972 SAH1YER043C 1350 nt18.11■□□□□ 0.49
RCM1P53972 SRB2YHR041C 633 nt18.09■□□□□ 0.49
RCM1P53972 PUT4YOR348C 1884 nt18.01■□□□□ 0.47
RCM1P53972 NPL3YDR432W 1245 nt17.87■□□□□ 0.45
RCM1P53972 ARE1YCR048W 1833 nt17.84■□□□□ 0.45
RCM1P53972 YJR018WYJR018W 363 nt17.82■□□□□ 0.44
RCM1P53972 MNP1YGL068W 585 nt17.78■□□□□ 0.44
RCM1P53972 WWM1YFL010C 636 nt17.77■□□□□ 0.44
RCM1P53972 YJR120WYJR120W 351 nt17.77■□□□□ 0.44
RCM1P53972 HOM6YJR139C 1080 nt17.74■□□□□ 0.43
RCM1P53972 PUN1YLR414C 792 nt17.72■□□□□ 0.43
RCM1P53972 YGR021WYGR021W 873 nt17.7■□□□□ 0.42
RCM1P53972 YHR049C-AYHR049C-A 297 nt17.59■□□□□ 0.41
RCM1P53972 YOL037CYOL037C 354 nt17.55■□□□□ 0.4
RCM1P53972 RPP2BYDR382W 333 nt17.52■□□□□ 0.4
RCM1P53972 PTC2YER089C 1395 nt17.49■□□□□ 0.39
RCM1P53972 POA1YBR022W 534 nt17.48■□□□□ 0.39
RCM1P53972 RKM5YLR137W 1104 nt17.47■□□□□ 0.39
RCM1P53972 SSA3YBL075C 1950 nt17.46■□□□□ 0.39
RCM1P53972 tM(CAU)CtM(CAU)C 72 nt17.46■□□□□ 0.39
RCM1P53972 IMT4tM(CAU)E 72 nt17.46■□□□□ 0.39
RCM1P53972 IMT3tM(CAU)J3 72 nt17.46■□□□□ 0.39
RCM1P53972 IMT1tM(CAU)O1 72 nt17.46■□□□□ 0.39
RCM1P53972 IMT2tM(CAU)P 72 nt17.46■□□□□ 0.39
RCM1P53972 YFL021C-AYFL021C-A 855 nt17.39■□□□□ 0.37
RCM1P53972 BDH2YAL061W 1254 nt17.31■□□□□ 0.36
RCM1P53972 BUD23YCR047C 828 nt17.2■□□□□ 0.34
RCM1P53972 YLR281CYLR281C 468 nt17.16■□□□□ 0.34
RCM1P53972 NAB2YGL122C 1578 nt17.15■□□□□ 0.34
RCM1P53972 PUS2YGL063W 1113 nt17.14■□□□□ 0.33
RCM1P53972 LSM3YLR438C-A 270 nt17.13■□□□□ 0.33
RCM1P53972 INM2YDR287W 879 nt17.08■□□□□ 0.32
RCM1P53972 FIS1YIL065C 468 nt17.04■□□□□ 0.32
RCM1P53972 YBL100CYBL100C 315 nt17.04■□□□□ 0.32
RCM1P53972 WHI5YOR083W 888 nt17.04■□□□□ 0.32
RCM1P53972 DAL1YIR027C 1383 nt17.03■□□□□ 0.32
RCM1P53972 FPR4YLR449W 1179 nt17.02■□□□□ 0.32
RCM1P53972 BSC6YOL137W 1494 nt17.01■□□□□ 0.31
RCM1P53972 MOT3YMR070W 1473 nt16.95■□□□□ 0.3
RCM1P53972 PHO4YFR034C 939 nt16.9■□□□□ 0.3
RCM1P53972 FUN26YAL022C 1554 nt16.87■□□□□ 0.29
RCM1P53972 TRM9YML014W 840 nt16.87■□□□□ 0.29
RCM1P53972 YPR011CYPR011C 981 nt16.83■□□□□ 0.28
RCM1P53972 YLR236CYLR236C 324 nt16.75■□□□□ 0.27
RCM1P53972 FMP45YDL222C 930 nt16.73■□□□□ 0.27
RCM1P53972 DSK2YMR276W 1122 nt16.72■□□□□ 0.27
RCM1P53972 CCT6YDR188W 1641 nt16.71■□□□□ 0.27
RCM1P53972 YLR154C-GYLR154C-G 150 nt16.68■□□□□ 0.26
RCM1P53972 YCH1YGR203W 447 nt16.55■□□□□ 0.24
RCM1P53972 IMP2'YIL154C 1041 nt16.55■□□□□ 0.24
Retrieved 100 of 7,029 protein–RNA pairs in 15.1 ms