RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W YGR130CP53278 816 aa4.07□□□□□ -1.76
USE1YGL098W TY1A-BLQ12266 440 aa4.07□□□□□ -1.76
USE1YGL098W RPC31P17890 251 aa4.06□□□□□ -1.76
USE1YGL098W NUG1P40010 520 aaKnown RBP4.06□□□□□ -1.76
USE1YGL098W CWC22P53333 577 aaKnown RBP4.06□□□□□ -1.76
USE1YGL098W TRM732Q03496 1420 aa4.05□□□□□ -1.76
USE1YGL098W PBS2P08018 668 aa4.05□□□□□ -1.76
USE1YGL098W SPB4P25808 606 aaPredicted RBP4.05□□□□□ -1.76
USE1YGL098W FUN12P39730 1002 aaKnown RBP4.05□□□□□ -1.76
USE1YGL098W SNF7P39929 240 aaKnown RBP4.05□□□□□ -1.76
USE1YGL098W DPH6Q12429 685 aa4.05□□□□□ -1.76
USE1YGL098W PAF1P38351 445 aa4.04□□□□□ -1.76
USE1YGL098W IFH1P39520 1085 aa4.04□□□□□ -1.76
USE1YGL098W PTK2P47116 818 aaKnown RBP4.04□□□□□ -1.76
USE1YGL098W SCW11P53189 542 aa4.04□□□□□ -1.76
USE1YGL098W TUB4P53378 473 aa4.04□□□□□ -1.76
USE1YGL098W FPR4Q06205 392 aaPredicted RBP4.04□□□□□ -1.76
USE1YGL098W OPY1P38271 328 aa4.03□□□□□ -1.76
USE1YGL098W KRI1P42846 591 aaKnown RBP4.03□□□□□ -1.76
USE1YGL098W RTT106P40161 455 aa4.02□□□□□ -1.77
USE1YGL098W NOP58Q12499 511 aaKnown RBP4.02□□□□□ -1.77
USE1YGL098W COX6P00427 148 aa4.01□□□□□ -1.77
USE1YGL098W BUD4P47136 1447 aa4.01□□□□□ -1.77
USE1YGL098W YTA7P40340 1379 aa4.01□□□□□ -1.77
USE1YGL098W HSP82P02829 709 aaKnown RBP4□□□□□ -1.77
USE1YGL098W SPT2P06843 333 aaPredicted RBP4□□□□□ -1.77
USE1YGL098W LEU3P08638 886 aa4□□□□□ -1.77
USE1YGL098W DIT2P21595 489 aa4□□□□□ -1.77
USE1YGL098W ENV11P53246 860 aa4□□□□□ -1.77
USE1YGL098W TOP2P06786 1428 aaKnown RBP4□□□□□ -1.77
USE1YGL098W SRB8P25648 1427 aa4□□□□□ -1.77
USE1YGL098W MON2P48563 1636 aaPredicted RBP3.99□□□□□ -1.77
USE1YGL098W IES2P40154 320 aa3.99□□□□□ -1.77
USE1YGL098W NUP85P46673 744 aa3.99□□□□□ -1.77
USE1YGL098W CFT1Q06632 1357 aaKnown RBP3.99□□□□□ -1.77
USE1YGL098W SMC4Q12267 1418 aa3.98□□□□□ -1.77
USE1YGL098W SBP1P10080 294 aaKnown RBP3.98□□□□□ -1.77
USE1YGL098W MIP1P15801 1254 aa3.98□□□□□ -1.77
USE1YGL098W ROX1P25042 368 aa3.98□□□□□ -1.77
USE1YGL098W NMD2P38798 1089 aaKnown RBP3.98□□□□□ -1.77
USE1YGL098W CKB1P43639 278 aa3.98□□□□□ -1.77
USE1YGL098W NSG2P53898 299 aa3.98□□□□□ -1.77
USE1YGL098W SSM4P40318 1319 aa3.97□□□□□ -1.77
USE1YGL098W UGA3P26370 528 aa3.97□□□□□ -1.77
USE1YGL098W SPC110P32380 944 aa3.97□□□□□ -1.77
USE1YGL098W YFL066CP43538 392 aa3.97□□□□□ -1.77
USE1YGL098W SMC3P47037 1230 aa3.97□□□□□ -1.77
USE1YGL098W PLP2Q12017 286 aa3.97□□□□□ -1.77
USE1YGL098W MAM3Q12296 706 aa3.97□□□□□ -1.77
USE1YGL098W SRF1Q12516 437 aa3.97□□□□□ -1.77
USE1YGL098W YLR419WQ06698 1435 aaKnown RBP3.96□□□□□ -1.77
USE1YGL098W NAP1P25293 417 aaKnown RBP3.96□□□□□ -1.78
USE1YGL098W DSF2P38213 736 aa3.96□□□□□ -1.78
USE1YGL098W YIR014WP40570 242 aa3.96□□□□□ -1.78
USE1YGL098W PAN1P32521 1480 aa3.96□□□□□ -1.78
USE1YGL098W MYO2P19524 1574 aaKnown RBP3.96□□□□□ -1.78
USE1YGL098W PEP1P32319 1579 aa3.96□□□□□ -1.78
USE1YGL098W NUP42P49686 430 aaKnown RBP3.95□□□□□ -1.78
USE1YGL098W TYW1Q08960 810 aaKnown RBP3.95□□□□□ -1.78
USE1YGL098W MMS1Q06211 1407 aa3.95□□□□□ -1.78
USE1YGL098W NOT3P06102 836 aaKnown RBP3.94□□□□□ -1.78
USE1YGL098W MSH4P40965 878 aaPredicted RBP3.94□□□□□ -1.78
USE1YGL098W PSH1Q12161 406 aa3.94□□□□□ -1.78
USE1YGL098W STU1P38198 1513 aa3.94□□□□□ -1.78
USE1YGL098W VPS24P36095 224 aaKnown RBP3.93□□□□□ -1.78
USE1YGL098W SLN1P39928 1220 aaPredicted RBP3.93□□□□□ -1.78
USE1YGL098W CTR9P89105 1077 aa3.93□□□□□ -1.78
USE1YGL098W NUP170P38181 1502 aa3.93□□□□□ -1.78
USE1YGL098W MHP1P43638 1398 aa3.92□□□□□ -1.78
USE1YGL098W TPD3P31383 635 aa3.92□□□□□ -1.78
USE1YGL098W YPP1P46951 817 aa3.92□□□□□ -1.78
USE1YGL098W JJJ3P47138 172 aa3.92□□□□□ -1.78
USE1YGL098W LYS5P50113 272 aa3.92□□□□□ -1.78
USE1YGL098W THI72Q08579 599 aa3.92□□□□□ -1.78
USE1YGL098W PDR10P51533 1564 aa3.92□□□□□ -1.78
USE1YGL098W EDE1P34216 1381 aa3.91□□□□□ -1.78
USE1YGL098W CCP1P00431 361 aa3.91□□□□□ -1.78
USE1YGL098W PDC1P06169 563 aaKnown RBP3.91□□□□□ -1.78
USE1YGL098W GLC3P32775 704 aa3.91□□□□□ -1.78
USE1YGL098W RAD26P40352 1085 aa3.91□□□□□ -1.78
USE1YGL098W PIL1P53252 339 aaKnown RBP3.91□□□□□ -1.78
USE1YGL098W MAK21Q12176 1025 aaKnown RBP3.91□□□□□ -1.78
USE1YGL098W SPT6P23615 1451 aaKnown RBP3.91□□□□□ -1.78
USE1YGL098W SWR1Q05471 1514 aa3.9□□□□□ -1.78
USE1YGL098W THO2P53552 1597 aaKnown RBP3.9□□□□□ -1.78
USE1YGL098W TAF2P23255 1407 aa3.9□□□□□ -1.78
USE1YGL098W CBF5P33322 483 aaKnown RBP RIP-Chip data3.9□□□□□ -1.79 RIP-Chip
USE1YGL098W ARL1P38116 183 aaKnown RBP3.9□□□□□ -1.79
USE1YGL098W TPM2P40414 161 aa3.9□□□□□ -1.79
USE1YGL098W DSN1P40568 576 aa3.9□□□□□ -1.79
USE1YGL098W HXT10P43581 546 aa3.9□□□□□ -1.79
USE1YGL098W YNL115CP53925 644 aa3.9□□□□□ -1.79
USE1YGL098W YNL011CP53980 444 aa3.9□□□□□ -1.79
USE1YGL098W TY1A-MR1Q04215 440 aa3.9□□□□□ -1.79
USE1YGL098W ESC2Q06340 456 aa3.9□□□□□ -1.79
USE1YGL098W CDC45Q08032 650 aa3.9□□□□□ -1.79
USE1YGL098W RPP0P05317 312 aaKnown RBP3.89□□□□□ -1.79
USE1YGL098W PCT1P13259 424 aa3.89□□□□□ -1.79
USE1YGL098W SIT4P20604 311 aa3.89□□□□□ -1.79
USE1YGL098W MSP1P28737 362 aa3.89□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 73.8 ms