Protein–RNA interactions for Protein: P40965

MSH4, MutS protein homolog 4, yeastyeast

Predicted RBP Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH4P40965 YML009W-BYML009W-B 477 nt24.06■■□□□ 1.44
MSH4P40965 NSR1YGR159C 1245 nt23.52■■□□□ 1.36
MSH4P40965 NOP1YDL014W 984 nt23.51■■□□□ 1.35
MSH4P40965 YKL036CYKL036C 393 nt21.98■■□□□ 1.11
MSH4P40965 MDJ1YFL016C 1536 nt20.72■□□□□ 0.91
MSH4P40965 YJL027CYJL027C 417 nt20.62■□□□□ 0.89
MSH4P40965 Q0297Q0297 156 nt20.6■□□□□ 0.89
MSH4P40965 SRX1YKL086W 384 nt20.48■□□□□ 0.87
MSH4P40965 SCS3YGL126W 1143 nt20.15■□□□□ 0.82
MSH4P40965 YCR051WYCR051W 669 nt19.54■□□□□ 0.72
MSH4P40965 YOL085CYOL085C 342 nt18.99■□□□□ 0.63
MSH4P40965 PKP1YIL042C 1185 nt18.72■□□□□ 0.59
MSH4P40965 RPP1BYDL130W 321 nt18.52■□□□□ 0.56
MSH4P40965 DBP2YNL112W 1641 nt18.37■□□□□ 0.53
MSH4P40965 TRN1tP(UGG)A 72 nt18.31■□□□□ 0.52
MSH4P40965 SUF9tP(UGG)F 72 nt18.31■□□□□ 0.52
MSH4P40965 SUF8tP(UGG)H 72 nt18.31■□□□□ 0.52
MSH4P40965 tP(UGG)LtP(UGG)L 72 nt18.31■□□□□ 0.52
MSH4P40965 SUF7tP(UGG)M 72 nt18.31■□□□□ 0.52
MSH4P40965 tP(UGG)N1tP(UGG)N1 72 nt18.31■□□□□ 0.52
MSH4P40965 tP(UGG)N2tP(UGG)N2 72 nt18.31■□□□□ 0.52
MSH4P40965 tP(UGG)O1tP(UGG)O1 72 nt18.31■□□□□ 0.52
MSH4P40965 SUF11tP(UGG)O2 72 nt18.31■□□□□ 0.52
MSH4P40965 CCC1YLR220W 969 nt18.23■□□□□ 0.51
MSH4P40965 SCJ1YMR214W 1134 nt18.23■□□□□ 0.51
MSH4P40965 ATS1YAL020C 1002 nt18.11■□□□□ 0.49
MSH4P40965 PET122YER153C 765 nt17.66■□□□□ 0.42
MSH4P40965 SCR1SCR1 522 nt17.63■□□□□ 0.41
MSH4P40965 YBR190WYBR190W 312 nt17.62■□□□□ 0.41
MSH4P40965 tP(UGG)O3tP(UGG)O3 72 nt17.45■□□□□ 0.38
MSH4P40965 RVS167YDR388W 1449 nt17.42■□□□□ 0.38
MSH4P40965 RTC3YHR087W 336 nt17.23■□□□□ 0.35
MSH4P40965 RRN5YLR141W 1092 nt17.18■□□□□ 0.34
MSH4P40965 RSB1YOR049C 1065 nt17■□□□□ 0.31
MSH4P40965 SSA3YBL075C 1950 nt16.89■□□□□ 0.3
MSH4P40965 YDJ1YNL064C 1230 nt16.85■□□□□ 0.29
MSH4P40965 YER088W-BYER088W-B 147 nt16.84■□□□□ 0.29
MSH4P40965 SHR5YOL110W 714 nt16.82■□□□□ 0.28
MSH4P40965 PST2YDR032C 597 nt16.67■□□□□ 0.26
MSH4P40965 GAR1YHR089C 618 nt16.5■□□□□ 0.23
MSH4P40965 DEP1YAL013W 1218 nt16.28■□□□□ 0.2
MSH4P40965 YKL097CYKL097C 411 nt16.28■□□□□ 0.2
MSH4P40965 URN1YPR152C 1398 nt16.17■□□□□ 0.18
MSH4P40965 RPN10YHR200W 807 nt16.05■□□□□ 0.16
MSH4P40965 YNL208WYNL208W 600 nt16.04■□□□□ 0.16
MSH4P40965 PUT4YOR348C 1884 nt15.97■□□□□ 0.15
MSH4P40965 SHU1YHL006C 453 nt15.94■□□□□ 0.14
MSH4P40965 OPI9YLR338W 858 nt15.93■□□□□ 0.14
MSH4P40965 TIR1YER011W 765 nt15.9■□□□□ 0.14
MSH4P40965 SAH1YER043C 1350 nt15.81■□□□□ 0.12
MSH4P40965 ARE1YCR048W 1833 nt15.71■□□□□ 0.11
MSH4P40965 YAL037C-BYAL037C-B 975 nt15.63■□□□□ 0.09
MSH4P40965 SSA1YAL005C 1929 nt15.6■□□□□ 0.09
MSH4P40965 YHR049C-AYHR049C-A 297 nt15.5■□□□□ 0.07
MSH4P40965 YOR139CYOR139C 393 nt15.48■□□□□ 0.07
MSH4P40965 POA1YBR022W 534 nt15.46■□□□□ 0.07
MSH4P40965 PUN1YLR414C 792 nt15.45■□□□□ 0.06
MSH4P40965 YJR018WYJR018W 363 nt15.43■□□□□ 0.06
MSH4P40965 NPL3YDR432W 1245 nt15.39■□□□□ 0.05
MSH4P40965 SRB2YHR041C 633 nt15.36■□□□□ 0.05
MSH4P40965 YGR021WYGR021W 873 nt15.29■□□□□ 0.04
MSH4P40965 RPP2BYDR382W 333 nt15.27■□□□□ 0.04
MSH4P40965 YJR120WYJR120W 351 nt15.26■□□□□ 0.03
MSH4P40965 PTC2YER089C 1395 nt15.25■□□□□ 0.03
MSH4P40965 WWM1YFL010C 636 nt15.25■□□□□ 0.03
MSH4P40965 MNP1YGL068W 585 nt15.23■□□□□ 0.03
MSH4P40965 HOM6YJR139C 1080 nt15.2■□□□□ 0.02
MSH4P40965 BUD23YCR047C 828 nt15.13■□□□□ 0.01
MSH4P40965 BSC6YOL137W 1494 nt15.13■□□□□ 0.01
MSH4P40965 YOL037CYOL037C 354 nt15.1■□□□□ 0.01
MSH4P40965 Q0182Q0182 405 nt15.08■□□□□ 0
MSH4P40965 NAB2YGL122C 1578 nt15.04■□□□□ -0
MSH4P40965 YFL021C-AYFL021C-A 855 nt15□□□□□ -0.01
MSH4P40965 RKM5YLR137W 1104 nt15□□□□□ -0.01
MSH4P40965 BDH2YAL061W 1254 nt14.96□□□□□ -0.01
MSH4P40965 FIS1YIL065C 468 nt14.88□□□□□ -0.03
MSH4P40965 SPT5YML010W 3192 nt14.87□□□□□ -0.03
MSH4P40965 DAL1YIR027C 1383 nt14.86□□□□□ -0.03
MSH4P40965 tM(CAU)CtM(CAU)C 72 nt14.86□□□□□ -0.03
MSH4P40965 IMT4tM(CAU)E 72 nt14.86□□□□□ -0.03
MSH4P40965 IMT3tM(CAU)J3 72 nt14.86□□□□□ -0.03
MSH4P40965 IMT1tM(CAU)O1 72 nt14.86□□□□□ -0.03
MSH4P40965 IMT2tM(CAU)P 72 nt14.86□□□□□ -0.03
MSH4P40965 INM2YDR287W 879 nt14.85□□□□□ -0.03
MSH4P40965 FPR4YLR449W 1179 nt14.84□□□□□ -0.03
MSH4P40965 LSM3YLR438C-A 270 nt14.81□□□□□ -0.04
MSH4P40965 YBL100CYBL100C 315 nt14.77□□□□□ -0.05
MSH4P40965 PHO4YFR034C 939 nt14.74□□□□□ -0.05
MSH4P40965 PUS2YGL063W 1113 nt14.71□□□□□ -0.05
MSH4P40965 YLR281CYLR281C 468 nt14.68□□□□□ -0.06
MSH4P40965 TRM9YML014W 840 nt14.66□□□□□ -0.06
MSH4P40965 WHI5YOR083W 888 nt14.62□□□□□ -0.07
MSH4P40965 FUN26YAL022C 1554 nt14.59□□□□□ -0.07
MSH4P40965 SSA4YER103W 1929 nt14.49□□□□□ -0.09
MSH4P40965 MOT3YMR070W 1473 nt14.44□□□□□ -0.1
MSH4P40965 CCT6YDR188W 1641 nt14.43□□□□□ -0.1
MSH4P40965 YPS1YLR120C 1710 nt14.42□□□□□ -0.1
MSH4P40965 ALF1YNL148C 765 nt14.38□□□□□ -0.11
MSH4P40965 YLR154C-GYLR154C-G 150 nt14.37□□□□□ -0.11
MSH4P40965 DSK2YMR276W 1122 nt14.37□□□□□ -0.11
Retrieved 100 of 7,029 protein–RNA pairs in 13.9 ms