RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W FAP1P53971 965 aa10.48□□□□□ -0.73
USE1YGL098W PRY3P47033 881 aa9.94□□□□□ -0.82
USE1YGL098W MTC1P47018 478 aaKnown RBP9.52□□□□□ -0.89
USE1YGL098W YCK3P39962 524 aa9.46□□□□□ -0.9
USE1YGL098W HAA1Q12753 694 aaKnown RBP9.26□□□□□ -0.93
USE1YGL098W AAD16Q02895 342 aa9.18□□□□□ -0.94
USE1YGL098W PRI1P10363 409 aa9.03□□□□□ -0.96
USE1YGL098W TSR3Q12094 313 aaKnown RBP8.41□□□□□ -1.06
USE1YGL098W BUD31P25337 157 aaPredicted RBP8.37□□□□□ -1.07
USE1YGL098W YGL015CP33199 130 aa8.25□□□□□ -1.09
USE1YGL098W ISW2Q08773 1120 aa8.23□□□□□ -1.09
USE1YGL098W RPG1P38249 964 aaKnown RBP8.22□□□□□ -1.09
USE1YGL098W MRPL32P25348 183 aa8.07□□□□□ -1.12
USE1YGL098W SIS1P25294 352 aaKnown RBP7.75□□□□□ -1.17
USE1YGL098W DRS1P32892 752 aaKnown RBP7.45□□□□□ -1.22
USE1YGL098W CDC27P38042 758 aa7.4□□□□□ -1.22
USE1YGL098W UBP9P39967 754 aa7.4□□□□□ -1.22
USE1YGL098W UBP10P53874 792 aaPredicted RBP7.4□□□□□ -1.22
USE1YGL098W MAP2P38174 421 aaKnown RBP7.36□□□□□ -1.23
USE1YGL098W RSE1Q04693 1361 aaKnown RBP7.12□□□□□ -1.27
USE1YGL098W TGL3P40308 642 aa7.12□□□□□ -1.27
USE1YGL098W REB1P21538 810 aa7.11□□□□□ -1.27
USE1YGL098W TIF4632P39936 914 aaKnown RBP7.07□□□□□ -1.28
USE1YGL098W RPL17AP05740 184 aaKnown RBP7.01□□□□□ -1.29
USE1YGL098W RPL17BP46990 184 aaKnown RBP7.01□□□□□ -1.29
USE1YGL098W YKR023WP36119 530 aaKnown RBP6.97□□□□□ -1.29
USE1YGL098W SLX5P32828 619 aaKnown RBP6.89□□□□□ -1.31
USE1YGL098W SCY1P53009 804 aa6.87□□□□□ -1.31
USE1YGL098W DIP2Q12220 943 aaPredicted RBP6.87□□□□□ -1.31
USE1YGL098W TFC8Q12308 588 aa6.81□□□□□ -1.32
USE1YGL098W DCD1P06773 312 aa6.8□□□□□ -1.32
USE1YGL098W HOP09932 586 aa6.78□□□□□ -1.32
USE1YGL098W YBL029C-AQ3E756 94 aa6.77□□□□□ -1.33
USE1YGL098W MST1P07236 462 aa6.67□□□□□ -1.34
USE1YGL098W AIR2Q12476 344 aaKnown RBP6.67□□□□□ -1.34
USE1YGL098W SPT21P35209 758 aa6.64□□□□□ -1.35
USE1YGL098W VNX1P42839 908 aa6.64□□□□□ -1.35
USE1YGL098W YJL171CP46992 396 aa6.62□□□□□ -1.35
USE1YGL098W FKH1P40466 484 aa6.55□□□□□ -1.36
USE1YGL098W SPP1Q03012 353 aa6.53□□□□□ -1.36
USE1YGL098W BCH2P36122 765 aa6.52□□□□□ -1.37
USE1YGL098W RGA2Q06407 1009 aa6.5□□□□□ -1.37
USE1YGL098W YOR238WQ08634 303 aa6.48□□□□□ -1.37
USE1YGL098W AVT3P36062 692 aa6.41□□□□□ -1.38
USE1YGL098W BMT6Q12291 365 aa6.4□□□□□ -1.38
USE1YGL098W TIF11P38912 153 aaKnown RBP6.37□□□□□ -1.39
USE1YGL098W WSC3Q12215 556 aa6.36□□□□□ -1.39
USE1YGL098W NSR1P27476 414 aaKnown RBP RIP-Chip data6.3□□□□□ -1.4not detected
USE1YGL098W LDB19Q12502 818 aa6.28□□□□□ -1.4
USE1YGL098W BDF1P35817 686 aa6.25□□□□□ -1.41
USE1YGL098W IOC2Q12072 812 aa6.22□□□□□ -1.41
USE1YGL098W EPS1P40557 701 aa6.21□□□□□ -1.42
USE1YGL098W YAP5P40574 245 aa6.18□□□□□ -1.42
USE1YGL098W ULI1P43604 169 aa6.16□□□□□ -1.42
USE1YGL098W RGA1P39083 1007 aa6.08□□□□□ -1.44
USE1YGL098W BCK2P33306 851 aa6.06□□□□□ -1.44
USE1YGL098W GTT3P39996 337 aa6.06□□□□□ -1.44
USE1YGL098W RIM101P33400 625 aa6.02□□□□□ -1.45
USE1YGL098W NCR1Q12200 1170 aa6.01□□□□□ -1.45
USE1YGL098W RTG1P32607 177 aa5.99□□□□□ -1.45
USE1YGL098W BFR2Q06631 534 aaKnown RBP5.93□□□□□ -1.46
USE1YGL098W EAP1P36041 632 aaKnown RBP5.91□□□□□ -1.46
USE1YGL098W MSB4Q12317 492 aa5.91□□□□□ -1.46
USE1YGL098W SEC61P32915 480 aa5.89□□□□□ -1.47
USE1YGL098W TRP5P00931 707 aaKnown RBP5.86□□□□□ -1.47
USE1YGL098W CHL1P22516 861 aaPredicted RBP5.86□□□□□ -1.47
USE1YGL098W YNL035CP53962 389 aaKnown RBP5.85□□□□□ -1.47
USE1YGL098W OXP1P28273 1286 aa5.82□□□□□ -1.48
USE1YGL098W XDJ1P39102 459 aa5.82□□□□□ -1.48
USE1YGL098W SAP30P38429 201 aa5.78□□□□□ -1.48
USE1YGL098W PIB1Q06651 286 aa5.78□□□□□ -1.48
USE1YGL098W PRE3P38624 215 aa5.77□□□□□ -1.49
USE1YGL098W DPS1P04802 557 aaKnown RBP5.76□□□□□ -1.49
USE1YGL098W SET4P42948 560 aa5.75□□□□□ -1.49
USE1YGL098W YOL036WQ08206 761 aa5.75□□□□□ -1.49
USE1YGL098W TFG1P41895 735 aaPredicted RBP5.74□□□□□ -1.49
USE1YGL098W BBC1P47068 1157 aa5.74□□□□□ -1.49
USE1YGL098W SRC1Q03707 834 aa5.72□□□□□ -1.49
USE1YGL098W VRP1P37370 817 aa5.7□□□□□ -1.5
USE1YGL098W YDL129WQ07555 291 aa5.68□□□□□ -1.5
USE1YGL098W DAN4P47179 1161 aa5.67□□□□□ -1.5
USE1YGL098W AI2P03876 854 aa5.66□□□□□ -1.5
USE1YGL098W PTP3P40048 928 aa5.66□□□□□ -1.5
USE1YGL098W YIL055CP40523 627 aaKnown RBP5.6□□□□□ -1.51
USE1YGL098W JIP4Q03361 876 aa5.58□□□□□ -1.52
USE1YGL098W RSM7P47150 247 aa5.57□□□□□ -1.52
USE1YGL098W YDR344CQ05510 147 aa5.52□□□□□ -1.53
USE1YGL098W SAM3Q08986 587 aa5.52□□□□□ -1.53
USE1YGL098W VMA1P17255 1071 aaKnown RBP5.46□□□□□ -1.54
USE1YGL098W YAH1Q12184 172 aaKnown RBP5.44□□□□□ -1.54
USE1YGL098W PTC4P38089 393 aa5.42□□□□□ -1.54
USE1YGL098W ELP4Q02884 456 aaKnown RBP5.42□□□□□ -1.54
USE1YGL098W YPL062WQ02781 134 aa5.41□□□□□ -1.54
USE1YGL098W DBP1P24784 617 aaKnown RBP5.39□□□□□ -1.55
USE1YGL098W ABP1P15891 592 aaKnown RBP5.37□□□□□ -1.55
USE1YGL098W YMR1P47147 688 aaKnown RBP RIP-Chip data5.37□□□□□ -1.55not detected
USE1YGL098W YEL023CP39992 682 aa5.36□□□□□ -1.55
USE1YGL098W YLR271WQ06152 274 aa5.36□□□□□ -1.55
USE1YGL098W MRM1P25270 412 aa5.35□□□□□ -1.55
USE1YGL098W PSD2P53037 1138 aaKnown RBP5.35□□□□□ -1.55
Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms