RNA–Protein interactions for RNA: ENST00000569764.1

SMG1-217, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 4,187 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-217ENST00000569764 CASKIN1Q8WXD9 1431 aa9.14□□□□□ -0.95
SMG1-217ENST00000569764 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.13□□□□□ -0.95
SMG1-217ENST00000569764 MAP3K1Q13233 1512 aa9.13□□□□□ -0.95
SMG1-217ENST00000569764 TICAM2Q86XR7 235 aa9.13□□□□□ -0.95
SMG1-217ENST00000569764 CNPY4Q8N129 248 aa9.13□□□□□ -0.95
SMG1-217ENST00000569764 C1orf115Q9H7X2 142 aa9.13□□□□□ -0.95
SMG1-217ENST00000569764 CEP170Q5SW79 1584 aa9.13□□□□□ -0.95
SMG1-217ENST00000569764 CERS3Q8IU89 383 aa9.13□□□□□ -0.95
SMG1-217ENST00000569764 FYCO1Q9BQS8 1478 aa9.12□□□□□ -0.95
SMG1-217ENST00000569764 ITGAEP38570 1179 aa9.12□□□□□ -0.95
SMG1-217ENST00000569764 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.12□□□□□ -0.953e-6■□□□□ 9.6
SMG1-217ENST00000569764 ABCC10Q5T3U5 1492 aa9.12□□□□□ -0.95
SMG1-217ENST00000569764 DISP1Q96F81 1524 aa9.12□□□□□ -0.95
SMG1-217ENST00000569764 PKD2Q13563 968 aa9.11□□□□□ -0.95
SMG1-217ENST00000569764 CNTLNQ9NXG0 1405 aa9.11□□□□□ -0.95
SMG1-217ENST00000569764 PIAS4Q8N2W9 510 aaPredicted RBP9.11□□□□□ -0.95
SMG1-217ENST00000569764 WDR7Q9Y4E6 1490 aa9.1□□□□□ -0.95
SMG1-217ENST00000569764 RSPH6AQ9H0K4 717 aa9.09□□□□□ -0.95
SMG1-217ENST00000569764 CLSTN1O94985 981 aa9.09□□□□□ -0.95
SMG1-217ENST00000569764 KDM6BO15054 1643 aa9.09□□□□□ -0.95
SMG1-217ENST00000569764 KIF3BO15066 747 aa9.09□□□□□ -0.96
SMG1-217ENST00000569764 CDK13Q14004 1512 aaKnown RBP9.08□□□□□ -0.96
SMG1-217ENST00000569764 NEUROD2Q15784 382 aa9.08□□□□□ -0.96
SMG1-217ENST00000569764 ZNF692Q9BU19 519 aaPredicted RBP9.08□□□□□ -0.96
SMG1-217ENST00000569764 UBAP1LF5GYI3 381 aa9.08□□□□□ -0.96
SMG1-217ENST00000569764 FBXO41Q8TF61 875 aa9.08□□□□□ -0.96
SMG1-217ENST00000569764 UGGT2Q9NYU1 1516 aa9.07□□□□□ -0.96
SMG1-217ENST00000569764 UHRF1BP1LA0JNW5 1464 aa9.07□□□□□ -0.96
SMG1-217ENST00000569764 DHX57Q6P158 1386 aaKnown RBP9.07□□□□□ -0.96
SMG1-217ENST00000569764 SF3B2Q13435 895 aaKnown RBP9.07□□□□□ -0.96
SMG1-217ENST00000569764 BRPF1P55201 1214 aaPredicted RBP9.07□□□□□ -0.96
SMG1-217ENST00000569764 PTPRKQ15262 1439 aa9.07□□□□□ -0.96
SMG1-217ENST00000569764 APBB1O00213 710 aa9.06□□□□□ -0.96
SMG1-217ENST00000569764 FAM177A1Q8N128 213 aaPredicted RBP9.06□□□□□ -0.96
SMG1-217ENST00000569764 NEO1Q92859 1461 aa9.06□□□□□ -0.96
SMG1-217ENST00000569764 KIAA0556O60303 1618 aa9.06□□□□□ -0.96
SMG1-217ENST00000569764 UHRF1BP1Q6BDS2 1440 aa9.06□□□□□ -0.96
SMG1-217ENST00000569764 SCAPERQ9BY12 1400 aa9.06□□□□□ -0.96
SMG1-217ENST00000569764 ATF3P18847 181 aa9.05□□□□□ -0.96
SMG1-217ENST00000569764 WWC1Q8IX03 1113 aa9.04□□□□□ -0.96
SMG1-217ENST00000569764 EPRSP07814 1512 aaKnown RBP9.03□□□□□ -0.96
SMG1-217ENST00000569764 CHD1O14646 1710 aa9.03□□□□□ -0.96
SMG1-217ENST00000569764 NCOA2Q15596 1464 aa9.03□□□□□ -0.96
SMG1-217ENST00000569764 KDM4AO75164 1064 aa9.03□□□□□ -0.96
SMG1-217ENST00000569764 RAPGEF3O95398 923 aa9.02□□□□□ -0.96
SMG1-217ENST00000569764 NUP153P49790 1475 aaKnown RBP9.02□□□□□ -0.97
SMG1-217ENST00000569764 RAB3GAP2Q9H2M9 1393 aa9.02□□□□□ -0.97
SMG1-217ENST00000569764 PTMSP20962 102 aa9.02□□□□□ -0.97
SMG1-217ENST00000569764 ANKRD30AQ9BXX3 1397 aa9.02□□□□□ -0.97
SMG1-217ENST00000569764 PLCD4Q9BRC7 762 aa9.02□□□□□ -0.97
SMG1-217ENST00000569764 FGD6Q6ZV73 1430 aa9.01□□□□□ -0.97
SMG1-217ENST00000569764 MAPKBP1O60336 1514 aa9.01□□□□□ -0.97
SMG1-217ENST00000569764 MAGI2Q86UL8 1455 aa9.01□□□□□ -0.97
SMG1-217ENST00000569764 A0A0G2JS52 829 aa9.01□□□□□ -0.97
SMG1-217ENST00000569764 ZMYND15Q9H091 742 aa9.01□□□□□ -0.97
SMG1-217ENST00000569764 ARHGAP5Q13017 1502 aa9.01□□□□□ -0.97
SMG1-217ENST00000569764 NAP1L2Q9ULW6 460 aaPredicted RBP9□□□□□ -0.97
SMG1-217ENST00000569764 SPRYD3Q8NCJ5 442 aa9□□□□□ -0.97
SMG1-217ENST00000569764 FOXD4L1Q9NU39 408 aa9□□□□□ -0.97
SMG1-217ENST00000569764 ERCC6L2Q5T890 1561 aa8.99□□□□□ -0.97
SMG1-217ENST00000569764 ADGRL1O94910 1474 aa8.99□□□□□ -0.97
SMG1-217ENST00000569764 HECW1Q76N89 1606 aa8.99□□□□□ -0.97
SMG1-217ENST00000569764 CLASP1Q7Z460 1538 aa8.99□□□□□ -0.97
SMG1-217ENST00000569764 TROQ12816 1431 aaPredicted RBP8.99□□□□□ -0.97
SMG1-217ENST00000569764 SUPT6HQ7KZ85 1726 aaKnown RBP8.99□□□□□ -0.97
SMG1-217ENST00000569764 PRDM16Q9HAZ2 1276 aa8.99□□□□□ -0.97
SMG1-217ENST00000569764 RAPGEF6Q8TEU7 1601 aa8.99□□□□□ -0.97
SMG1-217ENST00000569764 PROSER2Q86WR7 435 aaPredicted RBP8.98□□□□□ -0.97
SMG1-217ENST00000569764 EHBP1L1Q8N3D4 1523 aa8.97□□□□□ -0.97
SMG1-217ENST00000569764 PTPN23Q9H3S7 1636 aa8.97□□□□□ -0.97
SMG1-217ENST00000569764 CERKQ8TCT0 537 aa8.97□□□□□ -0.97
SMG1-217ENST00000569764 ZNF644Q9H582 1327 aaPredicted RBP8.97□□□□□ -0.97
SMG1-217ENST00000569764 MYOM3Q5VTT5 1437 aa8.97□□□□□ -0.97
SMG1-217ENST00000569764 CFAP74Q9C0B2 1584 aa8.96□□□□□ -0.97
SMG1-217ENST00000569764 SLC52A1Q9NWF4 448 aa8.96□□□□□ -0.97
SMG1-217ENST00000569764 BBXQ8WY36 941 aaPredicted RBP8.96□□□□□ -0.98
SMG1-217ENST00000569764 OS9Q13438 667 aaPredicted RBP8.96□□□□□ -0.98
SMG1-217ENST00000569764 SETD5Q9C0A6 1442 aa8.96□□□□□ -0.98
SMG1-217ENST00000569764 KIF14Q15058 1648 aa8.96□□□□□ -0.98
SMG1-217ENST00000569764 DISP3Q9P2K9 1392 aa8.95□□□□□ -0.98
SMG1-217ENST00000569764 PIP4K2BP78356 416 aa8.95□□□□□ -0.98
SMG1-217ENST00000569764 TXNDC2Q86VQ3 553 aa8.95□□□□□ -0.98
SMG1-217ENST00000569764 PPP4R3CPQ6ZMV5 832 aa8.94□□□□□ -0.98
SMG1-217ENST00000569764 SIN3AQ96ST3 1273 aa8.94□□□□□ -0.98
SMG1-217ENST00000569764 ZNF518AQ6AHZ1 1483 aa8.94□□□□□ -0.98
SMG1-217ENST00000569764 LMTK3Q96Q04 1460 aa8.94□□□□□ -0.98
SMG1-217ENST00000569764 C9orf84Q5VXU9 1444 aa8.94□□□□□ -0.98
SMG1-217ENST00000569764 HNRNPMP52272 730 aaKnown RBP eCLIP8.94□□□□□ -0.98
SMG1-217ENST00000569764 CHMP4BQ9H444 224 aaKnown RBP8.94□□□□□ -0.98
SMG1-217ENST00000569764 ATP10AO60312 1499 aa8.93□□□□□ -0.98
SMG1-217ENST00000569764 TMCO4Q5TGY1 634 aa8.93□□□□□ -0.98
SMG1-217ENST00000569764 FAM9BQ8IZU0 186 aa8.93□□□□□ -0.98
SMG1-217ENST00000569764 CCDC27Q2M243 656 aa8.92□□□□□ -0.98
SMG1-217ENST00000569764 CHIC2Q9UKJ5 165 aa8.92□□□□□ -0.98
SMG1-217ENST00000569764 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.92□□□□□ -0.98
SMG1-217ENST00000569764 ABCA8O94911 1581 aa8.92□□□□□ -0.98
SMG1-217ENST00000569764 NGLY1Q96IV0 654 aa8.92□□□□□ -0.98
SMG1-217ENST00000569764 NAIPQ13075 1403 aa8.92□□□□□ -0.98
SMG1-217ENST00000569764 POGKQ9P215 609 aa8.92□□□□□ -0.98
SMG1-217ENST00000569764 FAM135AQ9P2D6 1515 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms