RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 KIF3BO15066 747 aa24.82■■□□□ 1.56
CLSTN3-213ENST00000541953 NEURL4Q96JN8 1562 aa24.82■■□□□ 1.56
CLSTN3-213ENST00000541953 PPP6R1Q9UPN7 881 aa24.81■■□□□ 1.56
CLSTN3-213ENST00000541953 PZPP20742 1482 aa24.8■■□□□ 1.56
CLSTN3-213ENST00000541953 SPATA31D1Q6ZQQ2 1576 aa24.8■■□□□ 1.56
CLSTN3-213ENST00000541953 LRRC9Q6ZRR7 1453 aa24.79■■□□□ 1.56
CLSTN3-213ENST00000541953 POLR1AO95602 1720 aaPredicted RBP24.79■■□□□ 1.56
CLSTN3-213ENST00000541953 LOC105371045A0A1W2PR82 267 aa24.78■■□□□ 1.56
CLSTN3-213ENST00000541953 PKD2Q13563 968 aa24.78■■□□□ 1.56
CLSTN3-213ENST00000541953 TNRQ92752 1358 aa24.78■■□□□ 1.56
CLSTN3-213ENST00000541953 VPS8Q8N3P4 1428 aa24.78■■□□□ 1.56
CLSTN3-213ENST00000541953 FAM135AQ9P2D6 1515 aa24.75■■□□□ 1.55
CLSTN3-213ENST00000541953 RNF17Q9BXT8 1623 aaKnown RBP24.74■■□□□ 1.55
CLSTN3-213ENST00000541953 KANK4Q5T7N3 995 aaPredicted RBP24.73■■□□□ 1.55
CLSTN3-213ENST00000541953 MAST1Q9Y2H9 1570 aa24.72■■□□□ 1.55
CLSTN3-213ENST00000541953 MROH1Q8NDA8 1641 aa24.72■■□□□ 1.55
CLSTN3-213ENST00000541953 WASHC2CQ9Y4E1 1318 aa24.7■■□□□ 1.54
CLSTN3-213ENST00000541953 ABCC3O15438 1527 aa24.69■■□□□ 1.54
CLSTN3-213ENST00000541953 UBAP1LF5GYI3 381 aa24.68■■□□□ 1.54
CLSTN3-213ENST00000541953 RSPH4AQ5TD94 716 aa24.68■■□□□ 1.54
CLSTN3-213ENST00000541953 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.67■■□□□ 1.542e-7■■■■□ 20.6
CLSTN3-213ENST00000541953 MIA2Q96PC5 1412 aa24.67■■□□□ 1.54
CLSTN3-213ENST00000541953 CEP152O94986 1710 aa24.66■■□□□ 1.54
CLSTN3-213ENST00000541953 VWDEQ8N2E2 1590 aa24.65■■□□□ 1.54
CLSTN3-213ENST00000541953 UGGT1Q9NYU2 1555 aa24.65■■□□□ 1.54
CLSTN3-213ENST00000541953 EIF2AK4Q9P2K8 1649 aaKnown RBP24.64■■□□□ 1.54
CLSTN3-213ENST00000541953 MYOM3Q5VTT5 1437 aa24.64■■□□□ 1.54
CLSTN3-213ENST00000541953 ZC3H13Q5T200 1668 aaKnown RBP24.64■■□□□ 1.53
CLSTN3-213ENST00000541953 NLRP1Q9C000 1473 aa24.64■■□□□ 1.53
CLSTN3-213ENST00000541953 MAP3K1Q13233 1512 aa24.63■■□□□ 1.53
CLSTN3-213ENST00000541953 TSPY4P0CV99 314 aa24.63■■□□□ 1.53
CLSTN3-213ENST00000541953 TSPY10P0CW01 314 aa24.63■■□□□ 1.53
CLSTN3-213ENST00000541953 SHANK2Q9UPX8 1470 aa24.62■■□□□ 1.53
CLSTN3-213ENST00000541953 DEPDC5O75140 1603 aa24.6■■□□□ 1.53
CLSTN3-213ENST00000541953 ERVK-7P63135 1459 aa24.59■■□□□ 1.53
CLSTN3-213ENST00000541953 ALKQ9UM73 1620 aa24.59■■□□□ 1.53
CLSTN3-213ENST00000541953 STRCP1A6NGW2 1772 aa24.59■■□□□ 1.53
CLSTN3-213ENST00000541953 CROCC2H7BZ55 1655 aa24.59■■□□□ 1.53
CLSTN3-213ENST00000541953 CPS1P31327 1500 aa24.58■■□□□ 1.53
CLSTN3-213ENST00000541953 IQGAP1P46940 1657 aa24.58■■□□□ 1.53
CLSTN3-213ENST00000541953 MED14O60244 1454 aa24.58■■□□□ 1.52
CLSTN3-213ENST00000541953 NPHP4O75161 1426 aaPredicted RBP24.57■■□□□ 1.52
CLSTN3-213ENST00000541953 CFAP65Q6ZU64 1925 aaKnown RBP24.57■■□□□ 1.52
CLSTN3-213ENST00000541953 SOCS7O14512 581 aa24.56■■□□□ 1.52
CLSTN3-213ENST00000541953 ANKLE2Q86XL3 938 aa24.54■■□□□ 1.52
CLSTN3-213ENST00000541953 UBR1Q8IWV7 1749 aa24.54■■□□□ 1.52
CLSTN3-213ENST00000541953 DUOX2Q9NRD8 1548 aa24.54■■□□□ 1.52
CLSTN3-213ENST00000541953 THEMISQ8N1K5 641 aaPredicted RBP24.53■■□□□ 1.52
CLSTN3-213ENST00000541953 ABCC5O15440 1437 aa24.52■■□□□ 1.52
CLSTN3-213ENST00000541953 PRDM15P57071 1507 aaPredicted RBP24.52■■□□□ 1.52
CLSTN3-213ENST00000541953 PTPN23Q9H3S7 1636 aa24.52■■□□□ 1.52
CLSTN3-213ENST00000541953 HSPA1LP34931 641 aa24.5■■□□□ 1.51
CLSTN3-213ENST00000541953 PIP4K2BP78356 416 aa24.5■■□□□ 1.51
CLSTN3-213ENST00000541953 KIF15Q9NS87 1388 aa24.49■■□□□ 1.51
CLSTN3-213ENST00000541953 SCAF1Q9H7N4 1312 aaKnown RBP24.48■■□□□ 1.51
CLSTN3-213ENST00000541953 MED1Q15648 1581 aaPredicted RBP24.45■■□□□ 1.5
CLSTN3-213ENST00000541953 DAPK1P53355 1430 aa24.44■■□□□ 1.5
CLSTN3-213ENST00000541953 LRRC7Q96NW7 1537 aa24.44■■□□□ 1.5
CLSTN3-213ENST00000541953 ERBINQ96RT1 1412 aa24.44■■□□□ 1.5
CLSTN3-213ENST00000541953 RRP7BPQ9NSQ0 103 aa24.43■■□□□ 1.5
CLSTN3-213ENST00000541953 ARHGAP23Q9P227 1491 aa24.42■■□□□ 1.5
CLSTN3-213ENST00000541953 FGD6Q6ZV73 1430 aa24.42■■□□□ 1.5
CLSTN3-213ENST00000541953 PIK3C2BO00750 1634 aa24.42■■□□□ 1.5
CLSTN3-213ENST00000541953 ARHGAP31Q2M1Z3 1444 aa24.41■■□□□ 1.5
CLSTN3-213ENST00000541953 SYNMO15061 1565 aa24.41■■□□□ 1.5
CLSTN3-213ENST00000541953 SCAF11Q99590 1463 aaKnown RBP24.4■■□□□ 1.5
CLSTN3-213ENST00000541953 LTKP29376 864 aa24.4■■□□□ 1.5
CLSTN3-213ENST00000541953 SLIT1O75093 1534 aa24.4■■□□□ 1.5
CLSTN3-213ENST00000541953 TOM1O60784 492 aa24.39■■□□□ 1.49
CLSTN3-213ENST00000541953 XIRP1Q702N8 1843 aaKnown RBP24.38■■□□□ 1.49
CLSTN3-213ENST00000541953 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.37■■□□□ 1.49
CLSTN3-213ENST00000541953 CHIC2Q9UKJ5 165 aa24.34■■□□□ 1.49
CLSTN3-213ENST00000541953 SENP3Q9H4L4 574 aaPredicted RBP24.32■■□□□ 1.48
CLSTN3-213ENST00000541953 LMTK2Q8IWU2 1503 aa24.31■■□□□ 1.48
CLSTN3-213ENST00000541953 TXNDC2Q86VQ3 553 aa24.3■■□□□ 1.48
CLSTN3-213ENST00000541953 EFCAB6Q5THR3 1501 aa24.28■■□□□ 1.48
CLSTN3-213ENST00000541953 TMEM2Q9UHN6 1383 aa24.28■■□□□ 1.48
CLSTN3-213ENST00000541953 APLP2Q06481 763 aa24.26■■□□□ 1.47
CLSTN3-213ENST00000541953 KDM5AP29375 1690 aaKnown RBP24.26■■□□□ 1.47
CLSTN3-213ENST00000541953 ANKRD30AQ9BXX3 1397 aa24.26■■□□□ 1.47
CLSTN3-213ENST00000541953 ADGRL2O95490 1459 aa24.25■■□□□ 1.47
CLSTN3-213ENST00000541953 IDI1Q13907 227 aa24.24■■□□□ 1.47
CLSTN3-213ENST00000541953 KANK1Q14678 1352 aa24.24■■□□□ 1.47
CLSTN3-213ENST00000541953 NOS1P29475 1434 aa24.24■■□□□ 1.47
CLSTN3-213ENST00000541953 ADGRB3O60242 1522 aa24.23■■□□□ 1.47
CLSTN3-213ENST00000541953 TET3O43151 1660 aa24.22■■□□□ 1.47
CLSTN3-213ENST00000541953 MYO5BQ9ULV0 1848 aa24.19■■□□□ 1.46
CLSTN3-213ENST00000541953 EID1Q9Y6B2 187 aa24.18■■□□□ 1.46
CLSTN3-213ENST00000541953 STAG3Q9UJ98 1225 aa24.16■■□□□ 1.46
CLSTN3-213ENST00000541953 FAM50AQ14320 339 aaKnown RBP24.15■■□□□ 1.46
CLSTN3-213ENST00000541953 RBM33Q96EV2 1170 aaKnown RBP24.15■■□□□ 1.46
CLSTN3-213ENST00000541953 SLC26A8Q96RN1 970 aa24.15■■□□□ 1.46
CLSTN3-213ENST00000541953 TMEM94Q12767 1356 aa24.15■■□□□ 1.46
CLSTN3-213ENST00000541953 NWD1Q149M9 1564 aa24.14■■□□□ 1.45
CLSTN3-213ENST00000541953 ANKRD50Q9ULJ7 1429 aa24.14■■□□□ 1.45
CLSTN3-213ENST00000541953 GCC2Q8IWJ2 1684 aa24.14■■□□□ 1.45
CLSTN3-213ENST00000541953 UNC13BO14795 1591 aa24.11■■□□□ 1.45
CLSTN3-213ENST00000541953 ZFYVE9O95405 1425 aa24.1■■□□□ 1.45
CLSTN3-213ENST00000541953 ROBO1Q9Y6N7 1651 aa24.09■■□□□ 1.45
CLSTN3-213ENST00000541953 PHF23Q9BUL5 403 aaPredicted RBP24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms