RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 NISCHQ9Y2I1 1504 aa39.3■■■■□ 3.88
CLSTN3-213ENST00000541953 ABCC9O60706 1549 aa35.47■■■■□ 3.27
CLSTN3-213ENST00000541953 CCDC180Q9P1Z9 1646 aa35.31■■■■□ 3.24
CLSTN3-213ENST00000541953 RB1CC1Q8TDY2 1594 aa33.61■■■□□ 2.97
CLSTN3-213ENST00000541953 DNAJC5BQ9UF47 199 aa33.42■■■□□ 2.94
CLSTN3-213ENST00000541953 NACADO15069 1562 aa33.34■■■□□ 2.93
CLSTN3-213ENST00000541953 DCAF8L2P0C7V8 631 aa33.12■■■□□ 2.89
CLSTN3-213ENST00000541953 UNC13AQ9UPW8 1703 aa33.04■■■□□ 2.88
CLSTN3-213ENST00000541953 PABPN1Q86U42 306 aaKnown RBP eCLIP32.98■■■□□ 2.87
CLSTN3-213ENST00000541953 MYO15BQ96JP2 1530 aa32.82■■■□□ 2.85
CLSTN3-213ENST00000541953 BICRAQ9NZM4 1560 aa32.8■■■□□ 2.84
CLSTN3-213ENST00000541953 ZCCHC6Q5VYS8 1495 aaKnown RBP32.59■■■□□ 2.81
CLSTN3-213ENST00000541953 DCAF1Q9Y4B6 1507 aa32.4■■■□□ 2.78
CLSTN3-213ENST00000541953 SCRIBQ14160 1630 aa32.25■■■□□ 2.75
CLSTN3-213ENST00000541953 SHROOM4Q9ULL8 1493 aa32.13■■■□□ 2.73
CLSTN3-213ENST00000541953 CC2D2AQ9P2K1 1620 aa32.04■■■□□ 2.72
CLSTN3-213ENST00000541953 EIF4G1Q04637 1599 aaKnown RBP31.93■■■□□ 2.7
CLSTN3-213ENST00000541953 CECR2Q9BXF3 1484 aa31.91■■■□□ 2.7
CLSTN3-213ENST00000541953 NCAPD3P42695 1498 aa30.8■■■□□ 2.52
CLSTN3-213ENST00000541953 ATAD2BQ9ULI0 1458 aa30.74■■■□□ 2.51
CLSTN3-213ENST00000541953 SMARCA4P51532 1647 aa30.72■■■□□ 2.51
CLSTN3-213ENST00000541953 DNAJC5Q9H3Z4 198 aa30.61■■■□□ 2.49
CLSTN3-213ENST00000541953 SMARCA2P51531 1590 aa30.59■■■□□ 2.49
CLSTN3-213ENST00000541953 HMGXB3Q12766 1538 aa30.59■■■□□ 2.49
CLSTN3-213ENST00000541953 ERCC6Q03468 1493 aa30.53■■■□□ 2.48
CLSTN3-213ENST00000541953 CUX2O14529 1486 aa30.5■■■□□ 2.47
CLSTN3-213ENST00000541953 NESP48681 1621 aa30.49■■■□□ 2.47
CLSTN3-213ENST00000541953 BAZ1AQ9NRL2 1556 aaPredicted RBP30.47■■■□□ 2.47
CLSTN3-213ENST00000541953 BAZ1BQ9UIG0 1483 aaKnown RBP30.41■■■□□ 2.46
CLSTN3-213ENST00000541953 PEG3Q9GZU2 1588 aa30.38■■■□□ 2.45
CLSTN3-213ENST00000541953 MROH2BQ7Z745 1585 aa30.35■■■□□ 2.45
CLSTN3-213ENST00000541953 THOC2Q8NI27 1593 aaKnown RBP30.2■■■□□ 2.43
CLSTN3-213ENST00000541953 LAMC3Q9Y6N6 1575 aa30.13■■■□□ 2.41
CLSTN3-213ENST00000541953 KIF21AQ7Z4S6 1674 aa30.11■■■□□ 2.41
CLSTN3-213ENST00000541953 WIZO95785 1651 aa30■■■□□ 2.39
CLSTN3-213ENST00000541953 PDS5BQ9NTI5 1447 aa29.89■■■□□ 2.38
CLSTN3-213ENST00000541953 CADPSQ9ULU8 1353 aa29.85■■■□□ 2.37
CLSTN3-213ENST00000541953 MRC2Q9UBG0 1479 aa29.73■■■□□ 2.35
CLSTN3-213ENST00000541953 WDR62O43379 1518 aa29.7■■■□□ 2.34
CLSTN3-213ENST00000541953 RSF1Q96T23 1441 aaPredicted RBP29.62■■■□□ 2.33
CLSTN3-213ENST00000541953 CEP164Q9UPV0 1460 aa29.58■■■□□ 2.33
CLSTN3-213ENST00000541953 FANCD2Q9BXW9 1451 aa29.55■■■□□ 2.32
CLSTN3-213ENST00000541953 TOP2AP11388 1531 aaKnown RBP29.54■■■□□ 2.32
CLSTN3-213ENST00000541953 CFTRP13569 1480 aa29.52■■■□□ 2.32
CLSTN3-213ENST00000541953 URB2Q14146 1524 aaKnown RBP29.39■■■□□ 2.3
CLSTN3-213ENST00000541953 TRIM41Q8WV44 630 aa29.27■■■□□ 2.28
CLSTN3-213ENST00000541953 PRDM2Q13029 1718 aa29.27■■■□□ 2.28
CLSTN3-213ENST00000541953 CCDC88BA6NC98 1476 aa29.21■■■□□ 2.27
CLSTN3-213ENST00000541953 ZNF608Q9ULD9 1512 aaPredicted RBP29.06■■■□□ 2.24
CLSTN3-213ENST00000541953 OSCARQ8IYS5 282 aa29.02■■■□□ 2.24
CLSTN3-213ENST00000541953 TOPBP1Q92547 1522 aa29.01■■■□□ 2.23
CLSTN3-213ENST00000541953 IFT140Q96RY7 1462 aa28.96■■■□□ 2.23
CLSTN3-213ENST00000541953 EIF4G3O43432 1585 aaKnown RBP28.88■■■□□ 2.21
CLSTN3-213ENST00000541953 DNMBPQ6XZF7 1577 aa28.88■■■□□ 2.21
CLSTN3-213ENST00000541953 RIMBP3CA6NJZ7 1639 aa28.84■■■□□ 2.21
CLSTN3-213ENST00000541953 RIMBP3BA6NNM3 1639 aa28.84■■■□□ 2.21
CLSTN3-213ENST00000541953 RIMBP3Q9UFD9 1639 aa28.84■■■□□ 2.21
CLSTN3-213ENST00000541953 TARBP1Q13395 1621 aaKnown RBP28.8■■■□□ 2.2
CLSTN3-213ENST00000541953 ABCC8Q09428 1581 aa28.78■■■□□ 2.2
CLSTN3-213ENST00000541953 AQRO60306 1485 aaKnown RBP eCLIP28.73■■■□□ 2.195e-9■■■■■ 35
CLSTN3-213ENST00000541953 ARHGEF11O15085 1522 aa28.72■■■□□ 2.19
CLSTN3-213ENST00000541953 POLA1P09884 1462 aaPredicted RBP28.72■■■□□ 2.19
CLSTN3-213ENST00000541953 CHD1O14646 1710 aa28.71■■■□□ 2.19
CLSTN3-213ENST00000541953 RAD54L2Q9Y4B4 1467 aa28.65■■■□□ 2.18
CLSTN3-213ENST00000541953 CUX1P39880 1505 aa28.52■■■□□ 2.16
CLSTN3-213ENST00000541953 FGD5Q6ZNL6 1462 aa28.52■■■□□ 2.16
CLSTN3-213ENST00000541953 TDRD9Q8NDG6 1382 aaKnown RBP28.51■■■□□ 2.16
CLSTN3-213ENST00000541953 SOGA1O94964 1423 aa28.5■■■□□ 2.15
CLSTN3-213ENST00000541953 ARAP1Q96P48 1450 aa28.46■■■□□ 2.15
CLSTN3-213ENST00000541953 FBLN2P98095 1184 aa28.46■■■□□ 2.15
CLSTN3-213ENST00000541953 SNAPC4Q5SXM2 1469 aa28.44■■■□□ 2.14
CLSTN3-213ENST00000541953 CYB5RLQ6IPT4 315 aa28.42■■■□□ 2.14
CLSTN3-213ENST00000541953 WDR97A6NE52 1622 aa28.4■■■□□ 2.14
CLSTN3-213ENST00000541953 CLASP1Q7Z460 1538 aa28.34■■■□□ 2.13
CLSTN3-213ENST00000541953 MAGI1Q96QZ7 1491 aaPredicted RBP28.27■■■□□ 2.12
CLSTN3-213ENST00000541953 GRIN2BQ13224 1484 aa28.27■■■□□ 2.12
CLSTN3-213ENST00000541953 PBRM1Q86U86 1689 aa28.26■■■□□ 2.12
CLSTN3-213ENST00000541953 SYNJ1O43426 1573 aa28.22■■■□□ 2.11
CLSTN3-213ENST00000541953 SYNJ2O15056 1496 aa28.21■■■□□ 2.11
CLSTN3-213ENST00000541953 ABCA5Q8WWZ7 1642 aa28.19■■■□□ 2.1
CLSTN3-213ENST00000541953 CHMP7Q8WUX9 453 aaPredicted RBP28.19■■■□□ 2.1
CLSTN3-213ENST00000541953 SUPT5HO00267 1087 aaKnown RBP28.18■■■□□ 2.1
CLSTN3-213ENST00000541953 GAPVD1Q14C86 1478 aa28.18■■■□□ 2.1
CLSTN3-213ENST00000541953 ABCA10Q8WWZ4 1543 aa28.15■■■□□ 2.1
CLSTN3-213ENST00000541953 TRHP20396 242 aaPredicted RBP28.1■■■□□ 2.09
CLSTN3-213ENST00000541953 BIVM-ERCC5R4GMW8 1640 aa28■■■□□ 2.07
CLSTN3-213ENST00000541953 ADAMTS12P58397 1594 aa27.99■■■□□ 2.07
CLSTN3-213ENST00000541953 ERCC6L2Q5T890 1561 aa27.99■■■□□ 2.07
CLSTN3-213ENST00000541953 TOP2BQ02880 1626 aa27.98■■■□□ 2.07
CLSTN3-213ENST00000541953 GRIN2AQ12879 1464 aa27.95■■■□□ 2.07
CLSTN3-213ENST00000541953 WRNQ14191 1432 aaPredicted RBP eCLIP27.94■■■□□ 2.06
CLSTN3-213ENST00000541953 CEP170Q5SW79 1584 aa27.94■■■□□ 2.06
CLSTN3-213ENST00000541953 NUP160Q12769 1436 aa27.87■■■□□ 2.05
CLSTN3-213ENST00000541953 SHROOM2Q13796 1616 aa27.8■■■□□ 2.04
CLSTN3-213ENST00000541953 FHAD1B1AJZ9 1412 aa27.78■■■□□ 2.04
CLSTN3-213ENST00000541953 ERICH3Q5RHP9 1530 aa27.77■■■□□ 2.04
CLSTN3-213ENST00000541953 RUSC2Q8N2Y8 1516 aa27.61■■■□□ 2.01
CLSTN3-213ENST00000541953 PRG4Q92954 1404 aaPredicted RBP27.58■■■□□ 2
CLSTN3-213ENST00000541953 KIF13AQ9H1H9 1805 aa27.52■■■□□ 2
CLSTN3-213ENST00000541953 JPH4Q96JJ6 628 aa27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms