RNA–Protein interactions for RNA: YNL025C

SSN8, Transcript of Cyclin-like component of the RNA polymerase II holoenzyme, yeastyeast

Gene SSN8, Length 972 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSN8YNL025C CSC1Q06538 782 aa5.62□□□□□ -1.51
SSN8YNL025C TUM1Q08686 304 aaKnown RBP5.62□□□□□ -1.51
SSN8YNL025C MAK21Q12176 1025 aaKnown RBP5.62□□□□□ -1.51
SSN8YNL025C TY1A-DR4O74302 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-HP0C2I4 478 aaKnown RBP5.59□□□□□ -1.51
SSN8YNL025C TY1A-AP0CX57 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-PR1P0CX58 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-ORP0CX59 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-PR2P0CX60 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-DR5P0CX65 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-ER2P0CX66 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-GR3P0CX67 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-LR1P0CX68 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-MR2P0CX69 440 aa5.59□□□□□ -1.51
SSN8YNL025C SEC2P17065 759 aa5.59□□□□□ -1.51
SSN8YNL025C GAP1P19145 602 aaPredicted RBP5.59□□□□□ -1.51
SSN8YNL025C PAT1P25644 796 aaKnown RBP5.59□□□□□ -1.51
SSN8YNL025C TY1A-JR2P47099 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-DR1Q03856 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-ML1Q04706 440 aaKnown RBP5.59□□□□□ -1.51
SSN8YNL025C TY1A-BRQ12217 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-NL2Q12470 440 aa5.59□□□□□ -1.51
SSN8YNL025C TY1A-GR2Q12485 440 aa5.59□□□□□ -1.51
SSN8YNL025C COX6P00427 148 aa5.57□□□□□ -1.52
SSN8YNL025C RRN7P40992 514 aa5.57□□□□□ -1.52
SSN8YNL025C VPS70P47161 811 aa5.57□□□□□ -1.52
SSN8YNL025C ASH1P34233 588 aa5.56□□□□□ -1.52
SSN8YNL025C ORC6P38826 435 aa5.54□□□□□ -1.52
SSN8YNL025C CKB1P43639 278 aa5.54□□□□□ -1.52
SSN8YNL025C HST3P53687 447 aa5.54□□□□□ -1.52
SSN8YNL025C AFT1P22149 690 aa5.53□□□□□ -1.52
SSN8YNL025C RRD1P40454 393 aaKnown RBP5.52□□□□□ -1.53
SSN8YNL025C TAF7Q05021 590 aa5.51□□□□□ -1.53
SSN8YNL025C MET32Q12041 191 aa5.51□□□□□ -1.53
SSN8YNL025C MVP1P40959 511 aaKnown RBP5.49□□□□□ -1.53
SSN8YNL025C RGR1P19263 1082 aa5.47□□□□□ -1.53
SSN8YNL025C SAS10Q12136 610 aaPredicted RBP5.47□□□□□ -1.53
SSN8YNL025C PBS2P08018 668 aa5.45□□□□□ -1.54
SSN8YNL025C YJR115WP47152 169 aa5.45□□□□□ -1.54
SSN8YNL025C CAF120P53836 1060 aa5.44□□□□□ -1.54
SSN8YNL025C TRK2P28584 889 aa5.43□□□□□ -1.54
SSN8YNL025C PSE1P32337 1089 aaKnown RBP5.43□□□□□ -1.54
SSN8YNL025C YPR109WQ06104 294 aa5.43□□□□□ -1.54
SSN8YNL025C ACO2P39533 789 aa5.42□□□□□ -1.54
SSN8YNL025C DSF2P38213 736 aa5.41□□□□□ -1.54
SSN8YNL025C MOD5P07884 428 aa5.4□□□□□ -1.54
SSN8YNL025C CLB5P30283 435 aa5.4□□□□□ -1.54
SSN8YNL025C DMA1P38823 416 aa5.4□□□□□ -1.54
SSN8YNL025C YGR035CP53222 116 aa5.39□□□□□ -1.55
SSN8YNL025C PUS5Q06244 254 aa5.39□□□□□ -1.55
SSN8YNL025C MAM3Q12296 706 aa5.39□□□□□ -1.55
SSN8YNL025C KEX2P13134 814 aa5.37□□□□□ -1.55
SSN8YNL025C PAC1P39946 494 aaKnown RBP5.37□□□□□ -1.55
SSN8YNL025C MSB3P48566 633 aaPredicted RBP5.37□□□□□ -1.55
SSN8YNL025C YLR346CQ06139 101 aa5.37□□□□□ -1.55
SSN8YNL025C ERF2Q06551 359 aa5.35□□□□□ -1.55
SSN8YNL025C RTF1P53064 558 aa5.34□□□□□ -1.55
SSN8YNL025C OPT2Q06593 877 aa5.34□□□□□ -1.55
SSN8YNL025C IES2P40154 320 aa5.32□□□□□ -1.56
SSN8YNL025C NUP42P49686 430 aaKnown RBP5.32□□□□□ -1.56
SSN8YNL025C HPF1Q05164 967 aa5.32□□□□□ -1.56
SSN8YNL025C SRF1Q12516 437 aa5.31□□□□□ -1.56
SSN8YNL025C SIT4P20604 311 aa5.3□□□□□ -1.56
SSN8YNL025C UGA3P26370 528 aa5.3□□□□□ -1.56
SSN8YNL025C TUB4P53378 473 aa5.3□□□□□ -1.56
SSN8YNL025C SPB4P25808 606 aaPredicted RBP5.29□□□□□ -1.56
SSN8YNL025C ICP55P40051 511 aa5.29□□□□□ -1.56
SSN8YNL025C TEA1P47988 759 aa5.29□□□□□ -1.56
SSN8YNL025C YNL115CP53925 644 aa5.29□□□□□ -1.56
SSN8YNL025C AGE1Q04412 482 aa5.29□□□□□ -1.56
SSN8YNL025C PTK2P47116 818 aaKnown RBP5.28□□□□□ -1.56
SSN8YNL025C YPR204WQ08995 1032 aa5.28□□□□□ -1.56
SSN8YNL025C GLY1P37303 387 aaKnown RBP5.27□□□□□ -1.57
SSN8YNL025C YIR007WP40566 764 aa5.27□□□□□ -1.57
SSN8YNL025C SYH1Q02875 849 aaKnown RBP5.27□□□□□ -1.57
SSN8YNL025C PUS1Q12211 544 aaKnown RBP5.27□□□□□ -1.57
SSN8YNL025C LSB3P43603 459 aaKnown RBP5.26□□□□□ -1.57
SSN8YNL025C SCW11P53189 542 aa5.26□□□□□ -1.57
SSN8YNL025C DIT2P21595 489 aa5.25□□□□□ -1.57
SSN8YNL025C TPD3P31383 635 aa5.24□□□□□ -1.57
SSN8YNL025C KXD1P53158 218 aa5.24□□□□□ -1.57
SSN8YNL025C NIS1P53939 407 aa5.24□□□□□ -1.57
SSN8YNL025C TYW1Q08960 810 aaKnown RBP5.24□□□□□ -1.57
SSN8YNL025C NUP85P46673 744 aa5.23□□□□□ -1.57
SSN8YNL025C MIP1P15801 1254 aa5.22□□□□□ -1.57
SSN8YNL025C TY1A-BLQ12266 440 aa5.22□□□□□ -1.57
SSN8YNL025C HXT10P43581 546 aa5.2□□□□□ -1.58
SSN8YNL025C NRD1P53617 575 aaKnown RBP RIP-Chip data5.19□□□□□ -1.58not detected
SSN8YNL025C FPK1P53739 893 aa5.19□□□□□ -1.58
SSN8YNL025C HST2P53686 357 aa5.18□□□□□ -1.58
SSN8YNL025C YMR196WQ04336 1088 aa5.18□□□□□ -1.58
SSN8YNL025C PHM7Q12252 991 aa5.18□□□□□ -1.58
SSN8YNL025C SLY41P22215 453 aa5.17□□□□□ -1.58
SSN8YNL025C RTT106P40161 455 aa5.17□□□□□ -1.58
SSN8YNL025C BUB1P41695 1021 aaKnown RBP RIP-Chip data5.17□□□□□ -1.58not detected
SSN8YNL025C YNR021WP53723 404 aaKnown RBP5.17□□□□□ -1.58
SSN8YNL025C PUS6P53294 404 aa5.16□□□□□ -1.58
SSN8YNL025C DPH6Q12429 685 aa5.16□□□□□ -1.58
SSN8YNL025C PDC1P06169 563 aaKnown RBP5.15□□□□□ -1.59
SSN8YNL025C KIP2P28743 706 aa5.15□□□□□ -1.59
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms