RNA–Protein interactions for RNA: YNL025C

SSN8, Transcript of Cyclin-like component of the RNA polymerase II holoenzyme, yeastyeast

Gene SSN8, Length 972 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSN8YNL025C FAP1P53971 965 aa11.72□□□□□ -0.53
SSN8YNL025C MTC1P47018 478 aaKnown RBP11.61□□□□□ -0.55
SSN8YNL025C PRY3P47033 881 aa11.03□□□□□ -0.64
SSN8YNL025C AAD16Q02895 342 aa10.5□□□□□ -0.73
SSN8YNL025C PRI1P10363 409 aa10.4□□□□□ -0.74
SSN8YNL025C HAA1Q12753 694 aaKnown RBP10.32□□□□□ -0.76
SSN8YNL025C YCK3P39962 524 aa10.3□□□□□ -0.76
SSN8YNL025C ISW2Q08773 1120 aa9.9□□□□□ -0.82
SSN8YNL025C RPG1P38249 964 aaKnown RBP9.79□□□□□ -0.84
SSN8YNL025C TSR3Q12094 313 aaKnown RBP9.76□□□□□ -0.85
SSN8YNL025C DRS1P32892 752 aaKnown RBP9.74□□□□□ -0.85
SSN8YNL025C MRPL32P25348 183 aa9.43□□□□□ -0.9
SSN8YNL025C YGL015CP33199 130 aa9.36□□□□□ -0.91
SSN8YNL025C BUD31P25337 157 aaPredicted RBP9.04□□□□□ -0.96
SSN8YNL025C RSE1Q04693 1361 aaKnown RBP8.97□□□□□ -0.97
SSN8YNL025C DIP2Q12220 943 aaPredicted RBP8.95□□□□□ -0.98
SSN8YNL025C REB1P21538 810 aa8.83□□□□□ -1
SSN8YNL025C RPL17AP05740 184 aaKnown RBP8.73□□□□□ -1.01
SSN8YNL025C RPL17BP46990 184 aaKnown RBP8.73□□□□□ -1.01
SSN8YNL025C CDC27P38042 758 aa8.7□□□□□ -1.02
SSN8YNL025C UBP10P53874 792 aaPredicted RBP8.66□□□□□ -1.02
SSN8YNL025C MAP2P38174 421 aaKnown RBP8.57□□□□□ -1.04
SSN8YNL025C SIS1P25294 352 aaKnown RBP8.52□□□□□ -1.05
SSN8YNL025C YKR023WP36119 530 aaKnown RBP8.42□□□□□ -1.06
SSN8YNL025C UBP9P39967 754 aa8.42□□□□□ -1.06
SSN8YNL025C TIF4632P39936 914 aaKnown RBP8.35□□□□□ -1.07
SSN8YNL025C TGL3P40308 642 aa8.3□□□□□ -1.08
SSN8YNL025C AVT3P36062 692 aa8.29□□□□□ -1.08
SSN8YNL025C TFC8Q12308 588 aa8.26□□□□□ -1.09
SSN8YNL025C HOP09932 586 aa8.25□□□□□ -1.09
SSN8YNL025C SPT21P35209 758 aa8.25□□□□□ -1.09
SSN8YNL025C DCD1P06773 312 aa8.23□□□□□ -1.09
SSN8YNL025C SCY1P53009 804 aa8.21□□□□□ -1.1
SSN8YNL025C SLX5P32828 619 aaKnown RBP8.2□□□□□ -1.1
SSN8YNL025C BCH2P36122 765 aa7.94□□□□□ -1.14
SSN8YNL025C BFR2Q06631 534 aaKnown RBP7.93□□□□□ -1.14
SSN8YNL025C YBL029C-AQ3E756 94 aa7.84□□□□□ -1.15
SSN8YNL025C MST1P07236 462 aa7.8□□□□□ -1.16
SSN8YNL025C RIM101P33400 625 aa7.75□□□□□ -1.17
SSN8YNL025C YOR238WQ08634 303 aa7.74□□□□□ -1.17
SSN8YNL025C VNX1P42839 908 aa7.72□□□□□ -1.17
SSN8YNL025C BDF1P35817 686 aa7.67□□□□□ -1.18
SSN8YNL025C EPS1P40557 701 aa7.67□□□□□ -1.18
SSN8YNL025C SPP1Q03012 353 aa7.67□□□□□ -1.18
SSN8YNL025C YJL171CP46992 396 aa7.65□□□□□ -1.18
SSN8YNL025C NSR1P27476 414 aaKnown RBP RIP-Chip data7.6□□□□□ -1.19not detected
SSN8YNL025C AIR2Q12476 344 aaKnown RBP7.6□□□□□ -1.19
SSN8YNL025C WSC3Q12215 556 aa7.56□□□□□ -1.2
SSN8YNL025C FKH1P40466 484 aa7.53□□□□□ -1.2
SSN8YNL025C YAP5P40574 245 aa7.53□□□□□ -1.2
SSN8YNL025C TIF11P38912 153 aaKnown RBP7.51□□□□□ -1.21
SSN8YNL025C BMT6Q12291 365 aa7.43□□□□□ -1.22
SSN8YNL025C OXP1P28273 1286 aa7.41□□□□□ -1.22
SSN8YNL025C GTT3P39996 337 aa7.41□□□□□ -1.22
SSN8YNL025C PTP3P40048 928 aa7.41□□□□□ -1.22
SSN8YNL025C LDB19Q12502 818 aa7.4□□□□□ -1.22
SSN8YNL025C BBC1P47068 1157 aa7.39□□□□□ -1.23
SSN8YNL025C YIL055CP40523 627 aaKnown RBP7.38□□□□□ -1.23
SSN8YNL025C ULI1P43604 169 aa7.34□□□□□ -1.23
SSN8YNL025C IOC2Q12072 812 aa7.32□□□□□ -1.24
SSN8YNL025C AI2P03876 854 aa7.27□□□□□ -1.25
SSN8YNL025C RSM7P47150 247 aa7.25□□□□□ -1.25
SSN8YNL025C EAP1P36041 632 aaKnown RBP7.2□□□□□ -1.26
SSN8YNL025C MSB4Q12317 492 aa7.2□□□□□ -1.26
SSN8YNL025C RTG1P32607 177 aa7.16□□□□□ -1.26
SSN8YNL025C NCR1Q12200 1170 aa7.16□□□□□ -1.26
SSN8YNL025C PIB1Q06651 286 aa7.15□□□□□ -1.26
SSN8YNL025C TRP5P00931 707 aaKnown RBP7.09□□□□□ -1.27
SSN8YNL025C SEC61P32915 480 aa7.08□□□□□ -1.28
SSN8YNL025C YAH1Q12184 172 aaKnown RBP7.08□□□□□ -1.28
SSN8YNL025C YNL035CP53962 389 aaKnown RBP7.07□□□□□ -1.28
SSN8YNL025C SET4P42948 560 aa7.06□□□□□ -1.28
SSN8YNL025C YOL036WQ08206 761 aa7.05□□□□□ -1.28
SSN8YNL025C BCK2P33306 851 aa7.04□□□□□ -1.28
SSN8YNL025C TFG1P41895 735 aaPredicted RBP7.03□□□□□ -1.28
SSN8YNL025C TFA1P36100 482 aa7.02□□□□□ -1.29
SSN8YNL025C CHL1P22516 861 aaPredicted RBP6.96□□□□□ -1.3
SSN8YNL025C SAP30P38429 201 aa6.95□□□□□ -1.3
SSN8YNL025C MRM1P25270 412 aa6.94□□□□□ -1.3
SSN8YNL025C PSD2P53037 1138 aaKnown RBP6.93□□□□□ -1.3
SSN8YNL025C YLR271WQ06152 274 aa6.9□□□□□ -1.3
SSN8YNL025C YMR1P47147 688 aaKnown RBP RIP-Chip data6.89□□□□□ -1.31not detected
SSN8YNL025C PRE3P38624 215 aa6.88□□□□□ -1.31
SSN8YNL025C JIP4Q03361 876 aa6.88□□□□□ -1.31
SSN8YNL025C YDL129WQ07555 291 aa6.88□□□□□ -1.31
SSN8YNL025C VMA1P17255 1071 aaKnown RBP6.87□□□□□ -1.31
SSN8YNL025C DBP1P24784 617 aaKnown RBP6.87□□□□□ -1.31
SSN8YNL025C DAN4P47179 1161 aa6.87□□□□□ -1.31
SSN8YNL025C SAM3Q08986 587 aa6.86□□□□□ -1.31
SSN8YNL025C XDJ1P39102 459 aa6.82□□□□□ -1.32
SSN8YNL025C YFR006WP43590 535 aa6.81□□□□□ -1.32
SSN8YNL025C ABP1P15891 592 aaKnown RBP6.8□□□□□ -1.32
SSN8YNL025C VPS29P38759 282 aa6.8□□□□□ -1.32
SSN8YNL025C RGA2Q06407 1009 aa6.8□□□□□ -1.32
SSN8YNL025C VRP1P37370 817 aa6.77□□□□□ -1.33
SSN8YNL025C HTA1P04911 132 aaKnown RBP6.75□□□□□ -1.33
SSN8YNL025C HTA2P04912 132 aa6.75□□□□□ -1.33
SSN8YNL025C RTG3P38165 486 aa6.75□□□□□ -1.33
SSN8YNL025C STS1P38637 319 aa6.75□□□□□ -1.33
SSN8YNL025C PTC4P38089 393 aa6.74□□□□□ -1.33
Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms