RNA–Protein interactions for RNA: YEL005C

VAB2, Transcript of Subunit of the BLOC-1 complex involved in endosomal maturation, yeastyeast

Gene VAB2, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAB2YEL005C TY1A-GR2Q12485 440 aa7.51□□□□□ -1.21
VAB2YEL005C SEC2P17065 759 aa7.5□□□□□ -1.21
VAB2YEL005C TUM1Q08686 304 aaKnown RBP7.5□□□□□ -1.21
VAB2YEL005C GAP1P19145 602 aaPredicted RBP7.49□□□□□ -1.21
VAB2YEL005C SPT16P32558 1035 aaKnown RBP7.49□□□□□ -1.21
VAB2YEL005C YDR090CQ03193 310 aa7.48□□□□□ -1.21
VAB2YEL005C YDR444WQ04093 687 aa7.48□□□□□ -1.21
VAB2YEL005C GCD11P32481 527 aaKnown RBP7.47□□□□□ -1.21
VAB2YEL005C SET1P38827 1080 aaKnown RBP7.47□□□□□ -1.21
VAB2YEL005C BDP1P46678 594 aa7.47□□□□□ -1.21
VAB2YEL005C TFB4Q12004 338 aa7.46□□□□□ -1.22
VAB2YEL005C YDL176WQ12027 708 aa7.46□□□□□ -1.22
VAB2YEL005C NPL4P33755 580 aa7.45□□□□□ -1.22
VAB2YEL005C CSC1Q06538 782 aa7.43□□□□□ -1.22
VAB2YEL005C RRN7P40992 514 aa7.41□□□□□ -1.22
VAB2YEL005C KIC1P38692 1080 aa7.4□□□□□ -1.22
VAB2YEL005C HED1Q03937 162 aa7.4□□□□□ -1.22
VAB2YEL005C LCB5Q06147 687 aaKnown RBP7.38□□□□□ -1.23
VAB2YEL005C MET32Q12041 191 aa7.35□□□□□ -1.23
VAB2YEL005C ASH1P34233 588 aa7.34□□□□□ -1.23
VAB2YEL005C ORC6P38826 435 aa7.33□□□□□ -1.24
VAB2YEL005C PAT1P25644 796 aaKnown RBP7.29□□□□□ -1.24
VAB2YEL005C AFT1P22149 690 aa7.27□□□□□ -1.25
VAB2YEL005C RRD1P40454 393 aaKnown RBP7.27□□□□□ -1.25
VAB2YEL005C MVP1P40959 511 aaKnown RBP7.26□□□□□ -1.25
VAB2YEL005C HST3P53687 447 aa7.25□□□□□ -1.25
VAB2YEL005C MTC5Q03897 1148 aa7.24□□□□□ -1.25
VAB2YEL005C ERF2Q06551 359 aa7.24□□□□□ -1.25
VAB2YEL005C IFH1P39520 1085 aa7.23□□□□□ -1.25
VAB2YEL005C YPR109WQ06104 294 aa7.22□□□□□ -1.25
VAB2YEL005C PUS5Q06244 254 aa7.22□□□□□ -1.25
VAB2YEL005C MOD5P07884 428 aa7.21□□□□□ -1.26
VAB2YEL005C KEX2P13134 814 aa7.21□□□□□ -1.26
VAB2YEL005C PAC1P39946 494 aaKnown RBP7.21□□□□□ -1.26
VAB2YEL005C YJR115WP47152 169 aa7.21□□□□□ -1.26
VAB2YEL005C DMA1P38823 416 aa7.19□□□□□ -1.26
VAB2YEL005C REF2P42073 533 aaPredicted RBP7.18□□□□□ -1.26
VAB2YEL005C CAF120P53836 1060 aa7.18□□□□□ -1.26
VAB2YEL005C RGR1P19263 1082 aa7.16□□□□□ -1.26
VAB2YEL005C ACO2P39533 789 aa7.11□□□□□ -1.27
VAB2YEL005C AGE1Q04412 482 aa7.11□□□□□ -1.27
VAB2YEL005C TRK2P28584 889 aa7.08□□□□□ -1.28
VAB2YEL005C TUB4P53378 473 aa7.08□□□□□ -1.28
VAB2YEL005C COX6P00427 148 aa7.06□□□□□ -1.28
VAB2YEL005C MSB3P48566 633 aaPredicted RBP7.05□□□□□ -1.28
VAB2YEL005C OPT2Q06593 877 aa7.05□□□□□ -1.28
VAB2YEL005C YGR035CP53222 116 aa7.04□□□□□ -1.28
VAB2YEL005C YPR148CQ06523 435 aa7.04□□□□□ -1.28
VAB2YEL005C MAK21Q12176 1025 aaKnown RBP7.01□□□□□ -1.29
VAB2YEL005C HPF1Q05164 967 aa7□□□□□ -1.29
VAB2YEL005C YIR007WP40566 764 aa6.99□□□□□ -1.29
VAB2YEL005C PTK2P47116 818 aaKnown RBP6.99□□□□□ -1.29
VAB2YEL005C UGA3P26370 528 aa6.96□□□□□ -1.3
VAB2YEL005C YLR346CQ06139 101 aa6.95□□□□□ -1.3
VAB2YEL005C SYH1Q02875 849 aaKnown RBP6.94□□□□□ -1.3
VAB2YEL005C GLY1P37303 387 aaKnown RBP6.93□□□□□ -1.3
VAB2YEL005C VPS70P47161 811 aa6.93□□□□□ -1.3
VAB2YEL005C SRF1Q12516 437 aa6.93□□□□□ -1.3
VAB2YEL005C TPD3P31383 635 aa6.91□□□□□ -1.3
VAB2YEL005C KXD1P53158 218 aa6.91□□□□□ -1.3
VAB2YEL005C RTF1P53064 558 aa6.9□□□□□ -1.3
VAB2YEL005C HXT10P43581 546 aa6.89□□□□□ -1.31
VAB2YEL005C SCW11P53189 542 aa6.89□□□□□ -1.31
VAB2YEL005C YNL115CP53925 644 aa6.89□□□□□ -1.31
VAB2YEL005C TY1A-BLQ12266 440 aa6.89□□□□□ -1.31
VAB2YEL005C TYW1Q08960 810 aaKnown RBP6.88□□□□□ -1.31
VAB2YEL005C LSB3P43603 459 aaKnown RBP6.87□□□□□ -1.31
VAB2YEL005C NUP85P46673 744 aa6.87□□□□□ -1.31
VAB2YEL005C PDC1P06169 563 aaKnown RBP6.86□□□□□ -1.31
VAB2YEL005C MIP1P15801 1254 aa6.85□□□□□ -1.31
VAB2YEL005C ICP55P40051 511 aa6.85□□□□□ -1.31
VAB2YEL005C PSE1P32337 1089 aaKnown RBP6.84□□□□□ -1.31
VAB2YEL005C CLB5P30283 435 aa6.82□□□□□ -1.32
VAB2YEL005C PUS1Q12211 544 aaKnown RBP6.82□□□□□ -1.32
VAB2YEL005C YPR204WQ08995 1032 aa6.81□□□□□ -1.32
VAB2YEL005C SIT4P20604 311 aa6.8□□□□□ -1.32
VAB2YEL005C KIP2P28743 706 aa6.8□□□□□ -1.32
VAB2YEL005C MRT4P33201 236 aaKnown RBP6.78□□□□□ -1.32
VAB2YEL005C IXR1P33417 597 aa6.77□□□□□ -1.33
VAB2YEL005C MDJ1P35191 511 aa6.75□□□□□ -1.33
VAB2YEL005C NRD1P53617 575 aaKnown RBP RIP-Chip data6.73□□□□□ -1.33not detected
VAB2YEL005C NIS1P53939 407 aa6.73□□□□□ -1.33
VAB2YEL005C ROG3P43602 733 aa6.72□□□□□ -1.33
VAB2YEL005C LSC2P53312 427 aa6.72□□□□□ -1.33
VAB2YEL005C UBP2Q01476 1272 aa6.72□□□□□ -1.33
VAB2YEL005C SAS10Q12136 610 aaPredicted RBP6.72□□□□□ -1.33
VAB2YEL005C PHM7Q12252 991 aa6.71□□□□□ -1.34
VAB2YEL005C DPH6Q12429 685 aa6.71□□□□□ -1.34
VAB2YEL005C AAD14P42884 376 aa6.7□□□□□ -1.34
VAB2YEL005C ALR1Q08269 859 aa6.7□□□□□ -1.34
VAB2YEL005C YDL206WQ12424 762 aa6.7□□□□□ -1.34
VAB2YEL005C CCP1P00431 361 aa6.69□□□□□ -1.34
VAB2YEL005C SLY41P22215 453 aa6.69□□□□□ -1.34
VAB2YEL005C DLD1P32891 587 aa6.69□□□□□ -1.34
VAB2YEL005C TY1A-MR1Q04215 440 aa6.69□□□□□ -1.34
VAB2YEL005C YPR097WQ06839 1073 aa6.69□□□□□ -1.34
VAB2YEL005C ARG82P07250 355 aa6.68□□□□□ -1.34
VAB2YEL005C PBS2P08018 668 aa6.68□□□□□ -1.34
VAB2YEL005C YJR098CP47139 656 aa6.68□□□□□ -1.34
VAB2YEL005C RPA14P50106 137 aa6.68□□□□□ -1.34
Retrieved 100 of 5,963 RNA–protein pairs in 35 ms