RNA–Protein interactions for RNA: ENST00000540783.5

RAPGEF4-215, Transcript of Rap guanine nucleotide exchange factor 4, human

TSL 2 BASIC

Gene RAPGEF4, Length 3,974 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAPGEF4-215	ENST00000540783	RIMBP3B	A6NNM3	1639 aa		7.98	□□□□□ -1.13
RAPGEF4-215	ENST00000540783	RIMBP3	Q9UFD9	1639 aa		7.98	□□□□□ -1.13
RAPGEF4-215	ENST00000540783	RBM19	Q9Y4C8	960 aa	Known RBP	7.98	□□□□□ -1.13
RAPGEF4-215	ENST00000540783	KANK1	Q14678	1352 aa		7.98	□□□□□ -1.13
RAPGEF4-215	ENST00000540783	EHBP1L1	Q8N3D4	1523 aa		7.97	□□□□□ -1.13
RAPGEF4-215	ENST00000540783	ATP10B	O94823	1461 aa		7.97	□□□□□ -1.13
RAPGEF4-215	ENST00000540783	STAG3	Q9UJ98	1225 aa		7.96	□□□□□ -1.13
RAPGEF4-215	ENST00000540783	POGZ	Q7Z3K3	1410 aa		7.96	□□□□□ -1.13
RAPGEF4-215	ENST00000540783	ARHGAP5	Q13017	1502 aa		7.96	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	ANKRD30A	Q9BXX3	1397 aa		7.95	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	KDM5B	Q9UGL1	1544 aa		7.95	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	NEFL	P07196	543 aa		7.95	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	CHIC2	Q9UKJ5	165 aa		7.95	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	SAMD9	Q5K651	1589 aa		7.94	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	SHROOM2	Q13796	1616 aa		7.94	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	KIF14	Q15058	1648 aa		7.94	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	SIN3A	Q96ST3	1273 aa		7.94	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	MYOM3	Q5VTT5	1437 aa		7.94	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	MAP3K1	Q13233	1512 aa		7.93	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	NUP153	P49790	1475 aa	Known RBP	7.93	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	7.93	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	HNRNPM	P52272	730 aa	Known RBP eCLIP	7.93	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	DENND4B	O75064	1496 aa	Predicted RBP	7.92	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	LRRC9	Q6ZRR7	1453 aa		7.92	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	MIA2	Q96PC5	1412 aa		7.92	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	SCAPER	Q9BY12	1400 aa		7.92	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	ABCA8	O94911	1581 aa		7.92	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	CDK13	Q14004	1512 aa	Known RBP	7.92	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	MLEC	Q14165	292 aa		7.92	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	PLPPR3	Q6T4P5	718 aa		7.92	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	IRX6	P78412	446 aa	Predicted RBP	7.91	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	ABCC10	Q5T3U5	1492 aa		7.91	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	MSH5	O43196	834 aa		7.91	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	NCOA2	Q15596	1464 aa		7.9	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	PCF11	O94913	1555 aa	Known RBP	7.9	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	PLCH2	O75038	1416 aa		7.9	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	HDGF	P51858	240 aa	Known RBP	7.9	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	FANCA	O15360	1455 aa		7.9	□□□□□ -1.14
RAPGEF4-215	ENST00000540783	AKNA	Q7Z591	1439 aa		7.9	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	GGT6	Q6P531	493 aa		7.89	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	ADGRL1	O94910	1474 aa		7.89	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	NEO1	Q92859	1461 aa		7.89	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	ERCC6L2	Q5T890	1561 aa		7.89	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	RRP7BP	Q9NSQ0	103 aa		7.89	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	MAPKBP1	O60336	1514 aa		7.88	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	KIF3B	O15066	747 aa		7.88	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	TIAM1	Q13009	1591 aa		7.88	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	RAB3GAP2	Q9H2M9	1393 aa		7.88	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	SUPT6H	Q7KZ85	1726 aa	Known RBP	7.87	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	CHGA	P10645	457 aa	Known RBP	7.87	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	FGD6	Q6ZV73	1430 aa		7.87	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	PPP6R1	Q9UPN7	881 aa		7.86	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	PPP1R15A	O75807	674 aa	Predicted RBP	7.86	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	RAPGEF3	O95398	923 aa		7.86	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	WASHC2C	Q9Y4E1	1318 aa		7.86	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	ANP32C	O43423	234 aa		7.86	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	AFAP1	Q8N556	730 aa		7.86	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	CFAP74	Q9C0B2	1584 aa		7.85	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	ERICH6	Q7L0X2	663 aa		7.85	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	KIAA1107	Q9UPP5	1409 aa		7.85	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	SLC4A1AP	Q9BWU0	796 aa	Known RBP	7.85	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	ZNF518A	Q6AHZ1	1483 aa		7.84	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	RRBP1	Q9P2E9	1410 aa	Known RBP	7.84	□□□□□ -1.15
RAPGEF4-215	ENST00000540783	MAGI3	Q5TCQ9	1506 aa		7.84	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	CCDC141	Q6ZP82	1450 aa		7.84	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	ZCCHC11	Q5TAX3	1644 aa	Known RBP	7.83	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	KIF15	Q9NS87	1388 aa		7.82	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	ADCY10	Q96PN6	1610 aa		7.82	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	HNRNPU	Q00839	825 aa	Known RBP eCLIP	7.82	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	7.82	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	GPATCH8	Q9UKJ3	1502 aa	Known RBP	7.81	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	C9orf84	Q5VXU9	1444 aa		7.81	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	PRKCSH	P14314	528 aa	Predicted RBP	7.8	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	ZNF644	Q9H582	1327 aa	Predicted RBP	7.8	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	ITSN2	Q9NZM3	1697 aa		7.8	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	ZNF326	Q5BKZ1	582 aa	Known RBP	7.8	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	MAGI2	Q86UL8	1455 aa		7.8	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	CCER2	I3L3R5	266 aa		7.8	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	GLI2	P10070	1586 aa		7.8	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	EID1	Q9Y6B2	187 aa		7.8	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	ILDR1	Q86SU0	546 aa	Predicted RBP	7.79	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	ARAP3	Q8WWN8	1544 aa		7.79	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	NUP155	O75694	1391 aa		7.79	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	SETD5	Q9C0A6	1442 aa		7.79	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	CAMSAP2	Q08AD1	1489 aa		7.78	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	RTEL1-TNFRSF6B	F6WH68	1400 aa		7.78	□□□□□ -1.16
RAPGEF4-215	ENST00000540783	ANKRD50	Q9ULJ7	1429 aa		7.77	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	CFAP43	Q8NDM7	1665 aa		7.77	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	KDM6B	O15054	1643 aa		7.77	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	CNTLN	Q9NXG0	1405 aa		7.76	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	DHX29	Q7Z478	1369 aa	Known RBP	7.76	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	ATP10A	O60312	1499 aa		7.76	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	ROCK1	Q13464	1354 aa		7.76	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	7.76	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	DAPK1	P53355	1430 aa		7.76	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	B4GALNT3	Q6L9W6	998 aa		7.75	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	FANCI	Q9NVI1	1328 aa		7.75	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	NBR1	Q14596	966 aa		7.75	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	A2M	P01023	1474 aa		7.74	□□□□□ -1.17
RAPGEF4-215	ENST00000540783	DIP2B	Q9P265	1576 aa		7.74	□□□□□ -1.17

Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms