RNA–Protein interactions for RNA: ENST00000332853.8

VSTM4-202, Transcript of V-set and transmembrane domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VSTM4, Length 6,392 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSTM4-202ENST00000332853 NCAPD3P42695 1498 aa17.02■□□□□ 0.32
VSTM4-202ENST00000332853 SRPK2P78362 688 aaKnown RBP17.02■□□□□ 0.32
VSTM4-202ENST00000332853 FTSJ3Q8IY81 847 aaKnown RBP17.01■□□□□ 0.31
VSTM4-202ENST00000332853 KIF3BO15066 747 aa16.99■□□□□ 0.31
VSTM4-202ENST00000332853 SOX12O15370 315 aa16.99■□□□□ 0.31
VSTM4-202ENST00000332853 NUDCQ9Y266 331 aa16.99■□□□□ 0.31
VSTM4-202ENST00000332853 RGS3P49796 1198 aa16.98■□□□□ 0.31
VSTM4-202ENST00000332853 NUTM2DQ5VT03 806 aaPredicted RBP16.98■□□□□ 0.31
VSTM4-202ENST00000332853 LMOD2Q6P5Q4 547 aa16.98■□□□□ 0.31
VSTM4-202ENST00000332853 MORC1Q86VD1 984 aa16.97■□□□□ 0.31
VSTM4-202ENST00000332853 AQRO60306 1485 aaKnown RBP eCLIP16.97■□□□□ 0.31
VSTM4-202ENST00000332853 TRHP20396 242 aaPredicted RBP16.97■□□□□ 0.31
VSTM4-202ENST00000332853 KTN1Q86UP2 1357 aaKnown RBP16.96■□□□□ 0.31
VSTM4-202ENST00000332853 NESP48681 1621 aa16.94■□□□□ 0.3
VSTM4-202ENST00000332853 SPAG9O60271 1321 aaKnown RBP16.93■□□□□ 0.3
VSTM4-202ENST00000332853 PRDM2Q13029 1718 aa16.92■□□□□ 0.3
VSTM4-202ENST00000332853 PHLDB1Q86UU1 1377 aa16.92■□□□□ 0.3
VSTM4-202ENST00000332853 ZNF644Q9H582 1327 aaPredicted RBP16.91■□□□□ 0.3
VSTM4-202ENST00000332853 ANP32BQ92688 251 aaKnown RBP16.91■□□□□ 0.3
VSTM4-202ENST00000332853 DDRGK1Q96HY6 314 aa16.9■□□□□ 0.3
VSTM4-202ENST00000332853 PTPRGP23470 1445 aa16.89■□□□□ 0.29
VSTM4-202ENST00000332853 HAP1P54257 671 aaPredicted RBP16.89■□□□□ 0.29
VSTM4-202ENST00000332853 ARAP1Q96P48 1450 aa16.89■□□□□ 0.29
VSTM4-202ENST00000332853 LRRC9Q6ZRR7 1453 aa16.87■□□□□ 0.29
VSTM4-202ENST00000332853 CFTRP13569 1480 aa16.87■□□□□ 0.29
VSTM4-202ENST00000332853 BECN1Q14457 450 aa16.86■□□□□ 0.29
VSTM4-202ENST00000332853 CC2D2AQ9P2K1 1620 aa16.86■□□□□ 0.29
VSTM4-202ENST00000332853 FGD6Q6ZV73 1430 aa16.85■□□□□ 0.29
VSTM4-202ENST00000332853 ST20-MTHFSA0A0A6YYL1 179 aa16.85■□□□□ 0.29
VSTM4-202ENST00000332853 CUX1P39880 1505 aa16.85■□□□□ 0.29
VSTM4-202ENST00000332853 RALBP1Q15311 655 aa16.85■□□□□ 0.29
VSTM4-202ENST00000332853 RSPH4AQ5TD94 716 aa16.84■□□□□ 0.29
VSTM4-202ENST00000332853 WASHC2CQ9Y4E1 1318 aa16.83■□□□□ 0.29
VSTM4-202ENST00000332853 TOP2BQ02880 1626 aa16.83■□□□□ 0.28
VSTM4-202ENST00000332853 CCDC146Q8IYE0 955 aa16.82■□□□□ 0.28
VSTM4-202ENST00000332853 ERICH3Q5RHP9 1530 aa16.81■□□□□ 0.28
VSTM4-202ENST00000332853 CCDC144AA2RUR9 1427 aa16.81■□□□□ 0.28
VSTM4-202ENST00000332853 MYOM3Q5VTT5 1437 aa16.81■□□□□ 0.28
VSTM4-202ENST00000332853 EIF5BO60841 1220 aaKnown RBP16.8■□□□□ 0.28
VSTM4-202ENST00000332853 ANP32EQ9BTT0 268 aa16.8■□□□□ 0.28
VSTM4-202ENST00000332853 RCAN3Q9UKA8 241 aa16.8■□□□□ 0.28
VSTM4-202ENST00000332853 HDGFP51858 240 aaKnown RBP16.8■□□□□ 0.28
VSTM4-202ENST00000332853 U2AF1L5P0DN76 240 aaPredicted RBP16.8■□□□□ 0.28
VSTM4-202ENST00000332853 U2AF1Q01081 240 aaKnown RBP eCLIP16.8■□□□□ 0.28
VSTM4-202ENST00000332853 HDGFL2Q7Z4V5 671 aaPredicted RBP16.8■□□□□ 0.28
VSTM4-202ENST00000332853 TRAK1Q9UPV9 953 aa16.79■□□□□ 0.28
VSTM4-202ENST00000332853 PNNQ9H307 717 aaKnown RBP16.79■□□□□ 0.28
VSTM4-202ENST00000332853 NCOA2Q15596 1464 aa16.78■□□□□ 0.28
VSTM4-202ENST00000332853 CASKIN1Q8WXD9 1431 aa16.78■□□□□ 0.28
VSTM4-202ENST00000332853 EIF3AQ14152 1382 aaKnown RBP16.77■□□□□ 0.28
VSTM4-202ENST00000332853 RBM19Q9Y4C8 960 aaKnown RBP16.77■□□□□ 0.28
VSTM4-202ENST00000332853 PANK3Q9H999 370 aa16.76■□□□□ 0.27
VSTM4-202ENST00000332853 TPRNQ4KMQ1 711 aa16.76■□□□□ 0.27
VSTM4-202ENST00000332853 NOP58Q9Y2X3 529 aaKnown RBP16.76■□□□□ 0.27
VSTM4-202ENST00000332853 USP47Q96K76 1375 aa16.75■□□□□ 0.27
VSTM4-202ENST00000332853 BICRAQ9NZM4 1560 aa16.74■□□□□ 0.27
VSTM4-202ENST00000332853 HMGXB3Q12766 1538 aa16.73■□□□□ 0.27
VSTM4-202ENST00000332853 PRXQ9BXM0 1461 aa16.73■□□□□ 0.27
VSTM4-202ENST00000332853 TOPBP1Q92547 1522 aa16.73■□□□□ 0.27
VSTM4-202ENST00000332853 PAK3O75914 559 aaPredicted RBP16.73■□□□□ 0.27
VSTM4-202ENST00000332853 CASC1Q6TDU7 716 aa16.72■□□□□ 0.27
VSTM4-202ENST00000332853 NLRP13Q86W25 1043 aa16.72■□□□□ 0.27
VSTM4-202ENST00000332853 GRIN2BQ13224 1484 aa16.71■□□□□ 0.27
VSTM4-202ENST00000332853 CYB5RLQ6IPT4 315 aa16.71■□□□□ 0.27
VSTM4-202ENST00000332853 KIF15Q9NS87 1388 aa16.71■□□□□ 0.27
VSTM4-202ENST00000332853 POLA1P09884 1462 aaPredicted RBP16.71■□□□□ 0.27
VSTM4-202ENST00000332853 NUTM2FA1L443 756 aa16.71■□□□□ 0.27
VSTM4-202ENST00000332853 PRKRIP1Q9H875 184 aaPredicted RBP16.71■□□□□ 0.27
VSTM4-202ENST00000332853 NCLP19338 710 aaKnown RBP16.71■□□□□ 0.27
VSTM4-202ENST00000332853 MS4A1P11836 297 aa16.7■□□□□ 0.26
VSTM4-202ENST00000332853 FYCO1Q9BQS8 1478 aa16.7■□□□□ 0.26
VSTM4-202ENST00000332853 UACAQ9BZF9 1416 aa16.7■□□□□ 0.26
VSTM4-202ENST00000332853 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.69■□□□□ 0.26
VSTM4-202ENST00000332853 MYBBP1AQ9BQG0 1328 aaKnown RBP16.68■□□□□ 0.26
VSTM4-202ENST00000332853 RRBP1Q9P2E9 1410 aaKnown RBP16.68■□□□□ 0.26
VSTM4-202ENST00000332853 SPRYD3Q8NCJ5 442 aa16.67■□□□□ 0.26
VSTM4-202ENST00000332853 OS9Q13438 667 aaPredicted RBP16.67■□□□□ 0.26
VSTM4-202ENST00000332853 RRP7AQ9Y3A4 280 aaKnown RBP16.67■□□□□ 0.26
VSTM4-202ENST00000332853 APBB1O00213 710 aa16.67■□□□□ 0.26
VSTM4-202ENST00000332853 RTF1Q92541 710 aaKnown RBP16.66■□□□□ 0.26
VSTM4-202ENST00000332853 GOLGA2Q08379 1002 aa16.65■□□□□ 0.26
VSTM4-202ENST00000332853 TSHZ2Q9NRE2 1034 aa16.65■□□□□ 0.26
VSTM4-202ENST00000332853 ITPRIPQ8IWB1 547 aa16.65■□□□□ 0.26
VSTM4-202ENST00000332853 MRC2Q9UBG0 1479 aa16.65■□□□□ 0.26
VSTM4-202ENST00000332853 OSCARQ8IYS5 282 aa16.64■□□□□ 0.25
VSTM4-202ENST00000332853 TERF2IPQ9NYB0 399 aa16.64■□□□□ 0.25
VSTM4-202ENST00000332853 CLUAP1Q96AJ1 413 aa16.63■□□□□ 0.25
VSTM4-202ENST00000332853 CHMP4BQ9H444 224 aaKnown RBP16.63■□□□□ 0.25
VSTM4-202ENST00000332853 GOLGA6L22H0YM25 854 aa16.62■□□□□ 0.25
VSTM4-202ENST00000332853 UNC13AQ9UPW8 1703 aa16.62■□□□□ 0.25
VSTM4-202ENST00000332853 HSP90AB1P08238 724 aaKnown RBP16.62■□□□□ 0.25
VSTM4-202ENST00000332853 PLIN1O60240 522 aa16.62■□□□□ 0.25
VSTM4-202ENST00000332853 ANKRD50Q9ULJ7 1429 aa16.62■□□□□ 0.25
VSTM4-202ENST00000332853 TIAM1Q13009 1591 aa16.61■□□□□ 0.25
VSTM4-202ENST00000332853 DNAJC5BQ9UF47 199 aa16.61■□□□□ 0.25
VSTM4-202ENST00000332853 TAOK2Q9UL54 1235 aa16.61■□□□□ 0.25
VSTM4-202ENST00000332853 DNMBPQ6XZF7 1577 aa16.61■□□□□ 0.25
VSTM4-202ENST00000332853 KIF7Q2M1P5 1343 aa16.6■□□□□ 0.25
VSTM4-202ENST00000332853 EFCAB5A4FU69 1503 aa16.6■□□□□ 0.25
VSTM4-202ENST00000332853 SNAPC4Q5SXM2 1469 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms