RNA–Protein interactions for RNA: ENST00000332853.8

VSTM4-202, Transcript of V-set and transmembrane domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VSTM4, Length 6,392 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSTM4-202ENST00000332853 NISCHQ9Y2I1 1504 aa23.22■■□□□ 1.31
VSTM4-202ENST00000332853 DCAF8L2P0C7V8 631 aa23.18■■□□□ 1.3
VSTM4-202ENST00000332853 SUPT5HO00267 1087 aaKnown RBP22.14■■□□□ 1.13
VSTM4-202ENST00000332853 SHROOM4Q9ULL8 1493 aa22.09■■□□□ 1.13
VSTM4-202ENST00000332853 EHMT2Q96KQ7 1210 aa21.36■■□□□ 1.01
VSTM4-202ENST00000332853 FAM9AQ8IZU1 332 aaPredicted RBP20.84■□□□□ 0.93
VSTM4-202ENST00000332853 TTBK1Q5TCY1 1321 aaPredicted RBP20.58■□□□□ 0.89
VSTM4-202ENST00000332853 PCGF6Q9BYE7 350 aa20.52■□□□□ 0.88
VSTM4-202ENST00000332853 TRIM41Q8WV44 630 aa20.44■□□□□ 0.86
VSTM4-202ENST00000332853 APLP2Q06481 763 aa20.42■□□□□ 0.86
VSTM4-202ENST00000332853 RANGAP1P46060 587 aaPredicted RBP20.38■□□□□ 0.85
VSTM4-202ENST00000332853 UBTFP17480 764 aaKnown RBP20.07■□□□□ 0.8
VSTM4-202ENST00000332853 PPARGC1BQ86YN6 1023 aaKnown RBP20.04■□□□□ 0.8
VSTM4-202ENST00000332853 ATP1B4Q9UN42 357 aaPredicted RBP19.99■□□□□ 0.79
VSTM4-202ENST00000332853 CCER1Q8TC90 406 aaPredicted RBP19.94■□□□□ 0.78
VSTM4-202ENST00000332853 LOC105371045A0A1W2PR82 267 aa19.92■□□□□ 0.78
VSTM4-202ENST00000332853 CHIC1Q5VXU3 224 aa19.9■□□□□ 0.78
VSTM4-202ENST00000332853 ABCC9O60706 1549 aa19.85■□□□□ 0.77
VSTM4-202ENST00000332853 ZEB1P37275 1124 aaPredicted RBP19.76■□□□□ 0.75
VSTM4-202ENST00000332853 TRIM26Q12899 539 aaPredicted RBP19.66■□□□□ 0.74
VSTM4-202ENST00000332853 PABPN1Q86U42 306 aaKnown RBP eCLIP19.65■□□□□ 0.74
VSTM4-202ENST00000332853 PELP1Q8IZL8 1130 aaKnown RBP19.6■□□□□ 0.73
VSTM4-202ENST00000332853 HRCP23327 699 aa19.46■□□□□ 0.71
VSTM4-202ENST00000332853 CENPBP07199 599 aaPredicted RBP19.46■□□□□ 0.71
VSTM4-202ENST00000332853 ITGAEP38570 1179 aa19.46■□□□□ 0.71
VSTM4-202ENST00000332853 YTHDC1Q96MU7 727 aaKnown RBP19.45■□□□□ 0.7
VSTM4-202ENST00000332853 HNRNPUL2Q1KMD3 747 aaKnown RBP19.37■□□□□ 0.69
VSTM4-202ENST00000332853 ZCCHC6Q5VYS8 1495 aaKnown RBP19.28■□□□□ 0.68
VSTM4-202ENST00000332853 SCRIBQ14160 1630 aa19.27■□□□□ 0.67
VSTM4-202ENST00000332853 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.26■□□□□ 0.67
VSTM4-202ENST00000332853 CCDC180Q9P1Z9 1646 aa19.13■□□□□ 0.65
VSTM4-202ENST00000332853 POLR3GLQ9BT43 218 aa19■□□□□ 0.63
VSTM4-202ENST00000332853 MYT1LQ9UL68 1186 aa19■□□□□ 0.63
VSTM4-202ENST00000332853 FAM50AQ14320 339 aaKnown RBP18.97■□□□□ 0.63
VSTM4-202ENST00000332853 NEFLP07196 543 aa18.97■□□□□ 0.63
VSTM4-202ENST00000332853 CNGB1Q14028 1251 aaPredicted RBP18.94■□□□□ 0.62
VSTM4-202ENST00000332853 ERICH6Q7L0X2 663 aa18.91■□□□□ 0.62
VSTM4-202ENST00000332853 DIEXFQ68CQ4 756 aaKnown RBP18.84■□□□□ 0.61
VSTM4-202ENST00000332853 CSRNP3Q8WYN3 585 aa18.83■□□□□ 0.6
VSTM4-202ENST00000332853 P3H3Q8IVL6 736 aa18.81■□□□□ 0.6
VSTM4-202ENST00000332853 NEUROD1Q13562 356 aa18.79■□□□□ 0.6
VSTM4-202ENST00000332853 FBLN2P98095 1184 aa18.75■□□□□ 0.59
VSTM4-202ENST00000332853 TRIM52Q96A61 297 aa18.74■□□□□ 0.59
VSTM4-202ENST00000332853 ARID3CA6NKF2 412 aa18.71■□□□□ 0.59
VSTM4-202ENST00000332853 MYO15BQ96JP2 1530 aa18.66■□□□□ 0.58
VSTM4-202ENST00000332853 RB1CC1Q8TDY2 1594 aa18.59■□□□□ 0.57
VSTM4-202ENST00000332853 RSF1Q96T23 1441 aaPredicted RBP18.58■□□□□ 0.56
VSTM4-202ENST00000332853 DCAF1Q9Y4B6 1507 aa18.53■□□□□ 0.56
VSTM4-202ENST00000332853 SLC4A1APQ9BWU0 796 aaKnown RBP18.52■□□□□ 0.56
VSTM4-202ENST00000332853 ZNF326Q5BKZ1 582 aaKnown RBP18.52■□□□□ 0.56
VSTM4-202ENST00000332853 ZNF316A6NFI3 1004 aaPredicted RBP18.48■□□□□ 0.55
VSTM4-202ENST00000332853 NACADO15069 1562 aa18.45■□□□□ 0.54
VSTM4-202ENST00000332853 ZNF777Q9ULD5 760 aaPredicted RBP18.4■□□□□ 0.54
VSTM4-202ENST00000332853 GTF3C3Q9Y5Q9 886 aa18.38■□□□□ 0.53
VSTM4-202ENST00000332853 BCANQ96GW7 911 aa18.35■□□□□ 0.53
VSTM4-202ENST00000332853 ANP32CO43423 234 aa18.34■□□□□ 0.53
VSTM4-202ENST00000332853 CECR2Q9BXF3 1484 aa18.33■□□□□ 0.52
VSTM4-202ENST00000332853 BAZ1BQ9UIG0 1483 aaKnown RBP18.24■□□□□ 0.51
VSTM4-202ENST00000332853 CLIP1P30622 1438 aa18.23■□□□□ 0.51
VSTM4-202ENST00000332853 DAXXQ9UER7 740 aaPredicted RBP18.21■□□□□ 0.51
VSTM4-202ENST00000332853 CHIC2Q9UKJ5 165 aa18.21■□□□□ 0.51
VSTM4-202ENST00000332853 WRNQ14191 1432 aaPredicted RBP eCLIP18.2■□□□□ 0.5
VSTM4-202ENST00000332853 CEP162Q5TB80 1403 aa18.2■□□□□ 0.5
VSTM4-202ENST00000332853 CDK11AQ9UQ88 783 aaPredicted RBP18.18■□□□□ 0.5
VSTM4-202ENST00000332853 BAZ1AQ9NRL2 1556 aaPredicted RBP18.16■□□□□ 0.5
VSTM4-202ENST00000332853 GOLGA3Q08378 1498 aa18.15■□□□□ 0.5
VSTM4-202ENST00000332853 ACIN1Q9UKV3 1341 aaKnown RBP18.15■□□□□ 0.5
VSTM4-202ENST00000332853 TONSLQ96HA7 1378 aa18.11■□□□□ 0.49
VSTM4-202ENST00000332853 MROH2BQ7Z745 1585 aa18.1■□□□□ 0.49
VSTM4-202ENST00000332853 DDX10Q13206 875 aaKnown RBP18.07■□□□□ 0.48
VSTM4-202ENST00000332853 CLSPNQ9HAW4 1339 aa18.06■□□□□ 0.48
VSTM4-202ENST00000332853 EEA1Q15075 1411 aa18.06■□□□□ 0.48
VSTM4-202ENST00000332853 MTUS2Q5JR59 1369 aa18.06■□□□□ 0.48
VSTM4-202ENST00000332853 CHMP7Q8WUX9 453 aaPredicted RBP18.03■□□□□ 0.48
VSTM4-202ENST00000332853 HIRIP3Q9BW71 556 aaPredicted RBP18.02■□□□□ 0.48
VSTM4-202ENST00000332853 SOGA1O94964 1423 aa18.01■□□□□ 0.47
VSTM4-202ENST00000332853 MYT1Q01538 1121 aa18■□□□□ 0.47
VSTM4-202ENST00000332853 ABCC8Q09428 1581 aa18■□□□□ 0.47
VSTM4-202ENST00000332853 TNIKQ9UKE5 1360 aa18■□□□□ 0.47
VSTM4-202ENST00000332853 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.99■□□□□ 0.47
VSTM4-202ENST00000332853 CEP164Q9UPV0 1460 aa17.97■□□□□ 0.47
VSTM4-202ENST00000332853 KIF27Q86VH2 1401 aa17.97■□□□□ 0.47
VSTM4-202ENST00000332853 RRP7BPQ9NSQ0 103 aa17.97■□□□□ 0.47
VSTM4-202ENST00000332853 CCDC88BA6NC98 1476 aa17.97■□□□□ 0.47
VSTM4-202ENST00000332853 WIZO95785 1651 aa17.96■□□□□ 0.47
VSTM4-202ENST00000332853 CHGAP10645 457 aaKnown RBP17.94■□□□□ 0.46
VSTM4-202ENST00000332853 MIER1Q8N108 512 aa17.92■□□□□ 0.46
VSTM4-202ENST00000332853 FAM9BQ8IZU0 186 aa17.9■□□□□ 0.46
VSTM4-202ENST00000332853 KDM2AQ9Y2K7 1162 aa17.9■□□□□ 0.46
VSTM4-202ENST00000332853 HNRNPUQ00839 825 aaKnown RBP eCLIP17.87■□□□□ 0.45
VSTM4-202ENST00000332853 FKBP8Q14318 412 aa17.87■□□□□ 0.45
VSTM4-202ENST00000332853 BCL11AQ9H165 835 aa17.86■□□□□ 0.45
VSTM4-202ENST00000332853 TSPY4P0CV99 314 aa17.84■□□□□ 0.45
VSTM4-202ENST00000332853 TSPY10P0CW01 314 aa17.84■□□□□ 0.45
VSTM4-202ENST00000332853 PLPPR3Q6T4P5 718 aa17.84■□□□□ 0.45
VSTM4-202ENST00000332853 NPM1P06748 294 aaKnown RBP eCLIP17.84■□□□□ 0.45
VSTM4-202ENST00000332853 CANXP27824 592 aaKnown RBP17.83■□□□□ 0.45
VSTM4-202ENST00000332853 SALL2Q9Y467 1007 aaPredicted RBP17.83■□□□□ 0.45
VSTM4-202ENST00000332853 KCNH8Q96L42 1107 aa17.82■□□□□ 0.44
VSTM4-202ENST00000332853 RTL5Q5HYW3 569 aaPredicted RBP17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms