RNA–Protein interactions for RNA: ENSMUST00000040783.10

Usp40-201, Transcript of Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

APPRIS P3 TSL 1 (best) BASIC

Gene Usp40, Length 5,049 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40-201ENSMUST00000040783 Soga1E1U8D0 1418 aa9.78□□□□□ -0.84
Usp40-201ENSMUST00000040783 Ggt6Q6PDE7 497 aa9.77□□□□□ -0.85
Usp40-201ENSMUST00000040783 Stk26Q99JT2 416 aa9.77□□□□□ -0.85
Usp40-201ENSMUST00000040783 Gtf2e1Q9D0D5 440 aa9.77□□□□□ -0.85
Usp40-201ENSMUST00000040783 Arhgap35Q91YM2 1499 aa9.77□□□□□ -0.85
Usp40-201ENSMUST00000040783 Ifit1bl1D3Z6F0 470 aa9.77□□□□□ -0.85
Usp40-201ENSMUST00000040783 Hspa5P20029 655 aaKnown RBP9.77□□□□□ -0.85
Usp40-201ENSMUST00000040783 Lmod3E9QA62 571 aa9.77□□□□□ -0.85
Usp40-201ENSMUST00000040783 Mphosph9A6H5Y1 991 aa9.75□□□□□ -0.85
Usp40-201ENSMUST00000040783 Nup155Q99P88 1391 aaKnown RBP9.75□□□□□ -0.85
Usp40-201ENSMUST00000040783 Jph4Q80WT0 628 aa9.75□□□□□ -0.85
Usp40-201ENSMUST00000040783 Ofd1Q80Z25 1017 aa9.75□□□□□ -0.85
Usp40-201ENSMUST00000040783 Plekhh2Q8C115 1491 aa9.75□□□□□ -0.85
Usp40-201ENSMUST00000040783 WrnO09053 1401 aa9.74□□□□□ -0.85
Usp40-201ENSMUST00000040783 Rapgef2Q8CHG7 1496 aa9.74□□□□□ -0.85
Usp40-201ENSMUST00000040783 Rundc1Q0VDN7 615 aa9.74□□□□□ -0.85
Usp40-201ENSMUST00000040783 HdgfP51859 237 aaKnown RBP9.74□□□□□ -0.85
Usp40-201ENSMUST00000040783 Fhad1A6PWD2 1420 aa9.73□□□□□ -0.85
Usp40-201ENSMUST00000040783 NudcO35685 332 aaKnown RBP9.73□□□□□ -0.85
Usp40-201ENSMUST00000040783 Ppp4r2Q0VGB7 417 aa9.72□□□□□ -0.85
Usp40-201ENSMUST00000040783 Ccnb3Q810T2 1396 aa9.71□□□□□ -0.85
Usp40-201ENSMUST00000040783 Neurod2Q62414 383 aa9.71□□□□□ -0.85
Usp40-201ENSMUST00000040783 Efcab5A0JP43 1406 aa9.7□□□□□ -0.86
Usp40-201ENSMUST00000040783 Chmp4bQ9D8B3 224 aaKnown RBP9.69□□□□□ -0.86
Usp40-201ENSMUST00000040783 Nolc1E9Q5C9 702 aaKnown RBP9.69□□□□□ -0.86
Usp40-201ENSMUST00000040783 Ncoa2Q61026 1462 aa9.69□□□□□ -0.86
Usp40-201ENSMUST00000040783 Gm6268A2A3U9 297 aa9.68□□□□□ -0.86
Usp40-201ENSMUST00000040783 Tmf1B9EKI3 1091 aa9.68□□□□□ -0.86
Usp40-201ENSMUST00000040783 Urb2E9Q7L1 1524 aaKnown RBP9.68□□□□□ -0.86
Usp40-201ENSMUST00000040783 1700019A02RikA0A087WPV9 146 aa9.68□□□□□ -0.86
Usp40-201ENSMUST00000040783 4933402E13RikQ9D4D2 429 aa9.68□□□□□ -0.86
Usp40-201ENSMUST00000040783 Wdr43Q6ZQL4 677 aaKnown RBP9.67□□□□□ -0.86
Usp40-201ENSMUST00000040783 Sox12Q04890 314 aa9.67□□□□□ -0.86
Usp40-201ENSMUST00000040783 Rtf1A2AQ19 715 aaKnown RBP9.66□□□□□ -0.86
Usp40-201ENSMUST00000040783 Stard8Q8K031 1019 aa9.66□□□□□ -0.86
Usp40-201ENSMUST00000040783 Rtn4Q99P72 1162 aaKnown RBP9.66□□□□□ -0.86
Usp40-201ENSMUST00000040783 UacaQ8CGB3 1411 aa9.66□□□□□ -0.86
Usp40-201ENSMUST00000040783 Srcin1Q9QWI6 1250 aa9.65□□□□□ -0.86
Usp40-201ENSMUST00000040783 Spag9Q58A65 1321 aaKnown RBP9.65□□□□□ -0.86
Usp40-201ENSMUST00000040783 AU015836B2RUM3 263 aa9.64□□□□□ -0.87
Usp40-201ENSMUST00000040783 Apbb1Q9QXJ1 710 aa9.64□□□□□ -0.87
Usp40-201ENSMUST00000040783 Mrc2Q64449 1479 aa9.64□□□□□ -0.87
Usp40-201ENSMUST00000040783 Eif4g2Q62448 906 aaKnown RBP9.64□□□□□ -0.87
Usp40-201ENSMUST00000040783 Cc2d2bA0A286YDU8 1405 aa9.64□□□□□ -0.87
Usp40-201ENSMUST00000040783 Utp14aQ640M1 767 aaKnown RBP9.64□□□□□ -0.87
Usp40-201ENSMUST00000040783 Rock2P70336 1388 aa9.63□□□□□ -0.87
Usp40-201ENSMUST00000040783 Birc3O08863 600 aa9.63□□□□□ -0.87
Usp40-201ENSMUST00000040783 Ap3b2Q9JME5 1082 aa9.62□□□□□ -0.87
Usp40-201ENSMUST00000040783 CenpjQ569L8 1344 aa9.62□□□□□ -0.87
Usp40-201ENSMUST00000040783 Fan1Q69ZT1 1020 aa9.62□□□□□ -0.87
Usp40-201ENSMUST00000040783 Tdrd9Q14BI7 1383 aa9.61□□□□□ -0.87
Usp40-201ENSMUST00000040783 Fgd6Q69ZL1 1399 aa9.61□□□□□ -0.87
Usp40-201ENSMUST00000040783 Shroom4Q1W617 1475 aa9.61□□□□□ -0.87
Usp40-201ENSMUST00000040783 Trim30dE9PWL0 497 aa9.61□□□□□ -0.87
Usp40-201ENSMUST00000040783 Dcaf11Q91VU6 549 aa9.61□□□□□ -0.87
Usp40-201ENSMUST00000040783 Rad54l2Q99NG0 1466 aa9.6□□□□□ -0.87
Usp40-201ENSMUST00000040783 Duox2A2AQ99 1517 aa9.6□□□□□ -0.87
Usp40-201ENSMUST00000040783 Wwc2Q6NXJ0 1187 aa9.6□□□□□ -0.87
Usp40-201ENSMUST00000040783 Supt16hQ920B9 1047 aa9.6□□□□□ -0.87
Usp40-201ENSMUST00000040783 U2af1Q9D883 239 aaKnown RBP9.6□□□□□ -0.87
Usp40-201ENSMUST00000040783 Plin1Q8CGN5 517 aa9.59□□□□□ -0.87
Usp40-201ENSMUST00000040783 Polr1aO35134 1717 aaKnown RBP9.59□□□□□ -0.87
Usp40-201ENSMUST00000040783 Dnttip2Q8R2M2 758 aaKnown RBP9.59□□□□□ -0.87
Usp40-201ENSMUST00000040783 Trim44Q9QXA7 346 aa9.58□□□□□ -0.88
Usp40-201ENSMUST00000040783 U2surpQ6NV83 1029 aaKnown RBP9.57□□□□□ -0.88
Usp40-201ENSMUST00000040783 Plcd4Q8K3R3 807 aa9.57□□□□□ -0.88
Usp40-201ENSMUST00000040783 Shq1Q7TMX5 569 aa9.57□□□□□ -0.88
Usp40-201ENSMUST00000040783 Hsp90ab1P11499 724 aaKnown RBP9.57□□□□□ -0.88
Usp40-201ENSMUST00000040783 Znf710Q3U288 666 aa9.57□□□□□ -0.88
Usp40-201ENSMUST00000040783 Frmpd1A2AKB4 1549 aa9.56□□□□□ -0.88
Usp40-201ENSMUST00000040783 Sin3aQ60520 1274 aaKnown RBP9.56□□□□□ -0.88
Usp40-201ENSMUST00000040783 Top2aQ01320 1528 aaKnown RBP9.56□□□□□ -0.88
Usp40-201ENSMUST00000040783 Prdm16A2A935 1275 aa9.56□□□□□ -0.88
Usp40-201ENSMUST00000040783 PogzQ8BZH4 1409 aaKnown RBP9.55□□□□□ -0.88
Usp40-201ENSMUST00000040783 Map7O88735 730 aa9.55□□□□□ -0.88
Usp40-201ENSMUST00000040783 Zscan21Q07231 555 aa9.55□□□□□ -0.88
Usp40-201ENSMUST00000040783 Q3TQI7 289 aaKnown RBP9.55□□□□□ -0.88
Usp40-201ENSMUST00000040783 Speer4f1Q9D5Q6 258 aa9.55□□□□□ -0.88
Usp40-201ENSMUST00000040783 Rwdd1Q9CQK7 243 aa9.55□□□□□ -0.88
Usp40-201ENSMUST00000040783 NrkQ9R0G8 1455 aa9.54□□□□□ -0.88
Usp40-201ENSMUST00000040783 Golga2Q921M4 999 aa9.54□□□□□ -0.88
Usp40-201ENSMUST00000040783 TimelessQ9R1X4 1197 aa9.54□□□□□ -0.88
Usp40-201ENSMUST00000040783 CadpsQ80TJ1 1355 aa9.54□□□□□ -0.88
Usp40-201ENSMUST00000040783 Slc4a1apE9PX68 744 aa9.54□□□□□ -0.88
Usp40-201ENSMUST00000040783 HnrnpuQ8VEK3 800 aaKnown RBP9.54□□□□□ -0.88
Usp40-201ENSMUST00000040783 Nsd2Q8BVE8 1365 aa9.53□□□□□ -0.88
Usp40-201ENSMUST00000040783 DekQ7TNV0 380 aaKnown RBP9.53□□□□□ -0.88
Usp40-201ENSMUST00000040783 Ift140E9PY46 1464 aa9.53□□□□□ -0.88
Usp40-201ENSMUST00000040783 Usp47Q8BY87 1376 aa9.52□□□□□ -0.88
Usp40-201ENSMUST00000040783 ErbinQ80TH2 1402 aa9.52□□□□□ -0.88
Usp40-201ENSMUST00000040783 Nol10Q5RJG1 687 aaKnown RBP9.52□□□□□ -0.89
Usp40-201ENSMUST00000040783 Cux1P53564 1515 aa9.52□□□□□ -0.89
Usp40-201ENSMUST00000040783 Pak3Q61036 559 aa9.52□□□□□ -0.89
Usp40-201ENSMUST00000040783 Usp40Q8BWR4 1235 aa9.52□□□□□ -0.89
Usp40-201ENSMUST00000040783 Arhgap31A6X8Z5 1425 aa9.52□□□□□ -0.89
Usp40-201ENSMUST00000040783 Sart3Q9JLI8 962 aaKnown RBP9.52□□□□□ -0.89
Usp40-201ENSMUST00000040783 Mbd3Q9Z2D8 285 aaKnown RBP9.52□□□□□ -0.89
Usp40-201ENSMUST00000040783 Exoc6Q8R313 802 aa9.51□□□□□ -0.89
Usp40-201ENSMUST00000040783 Cabp4Q8VHC5 271 aa9.51□□□□□ -0.89
Usp40-201ENSMUST00000040783 Pes1Q9EQ61 584 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 22,080 RNA–protein pairs in 52.7 ms