Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm25239-201ENSMUST00000174915 86 ntBASIC54.15■■■■■ 6.26
Usp40Q8BWR4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC50.09■■■■■ 5.61
Usp40Q8BWR4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC49.34■■■■■ 5.49
Usp40Q8BWR4 Gm15042-201ENSMUST00000120212 883 ntBASIC47.25■■■■■ 5.15
Usp40Q8BWR4 Gm24109-201ENSMUST00000175489 103 ntBASIC46.97■■■■■ 5.11
Usp40Q8BWR4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC46.36■■■■■ 5.01
Usp40Q8BWR4 Gm15045-201ENSMUST00000117359 883 ntBASIC46.27■■■■■ 5
Usp40Q8BWR4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC45.82■■■■■ 4.93
Usp40Q8BWR4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC45.71■■■■■ 4.91
Usp40Q8BWR4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC45.57■■■■■ 4.89
Usp40Q8BWR4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC45.33■■■■■ 4.85
Usp40Q8BWR4 Gm23366-201ENSMUST00000175022 89 ntBASIC45.17■■■■■ 4.82
Usp40Q8BWR4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC44.96■■■■■ 4.79
Usp40Q8BWR4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC44.87■■■■■ 4.77
Usp40Q8BWR4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC44.13■■■■■ 4.66
Usp40Q8BWR4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC43.9■■■■■ 4.62
Usp40Q8BWR4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC43.79■■■■■ 4.6
Usp40Q8BWR4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC43.7■■■■■ 4.59
Usp40Q8BWR4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC43.66■■■■■ 4.58
Usp40Q8BWR4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC43.63■■■■■ 4.57
Usp40Q8BWR4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC43.52■■■■■ 4.56
Usp40Q8BWR4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC43.45■■■■■ 4.55
Usp40Q8BWR4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC43.26■■■■■ 4.52
Usp40Q8BWR4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC43.11■■■■■ 4.49
Usp40Q8BWR4 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC43.11■■■■■ 4.49
Usp40Q8BWR4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC43.09■■■■■ 4.49
Usp40Q8BWR4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC43.05■■■■■ 4.48
Usp40Q8BWR4 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC42.94■■■■■ 4.46
Usp40Q8BWR4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC42.92■■■■■ 4.46
Usp40Q8BWR4 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC42.87■■■■■ 4.45
Usp40Q8BWR4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC42.81■■■■■ 4.44
Usp40Q8BWR4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC42.8■■■■■ 4.44
Usp40Q8BWR4 Gm25238-201ENSMUST00000174914 89 ntBASIC42.79■■■■■ 4.44
Usp40Q8BWR4 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC42.66■■■■■ 4.42
Usp40Q8BWR4 Psd-208ENSMUST00000224556 2034 ntBASIC42.64■■■■■ 4.42
Usp40Q8BWR4 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC42.61■■■■■ 4.41
Usp40Q8BWR4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC42.42■■■■■ 4.38
Usp40Q8BWR4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC41.97■■■■■ 4.31
Usp40Q8BWR4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC41.87■■■■■ 4.29
Usp40Q8BWR4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC41.73■■■■■ 4.27
Usp40Q8BWR4 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC41.66■■■■■ 4.26
Usp40Q8BWR4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC41.62■■■■■ 4.25
Usp40Q8BWR4 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC41.56■■■■■ 4.24
Usp40Q8BWR4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC41.51■■■■■ 4.24
Usp40Q8BWR4 Gm27325-201ENSMUST00000175467 74 ntBASIC41.44■■■■■ 4.22
Usp40Q8BWR4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC41.44■■■■■ 4.22
Usp40Q8BWR4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC41.42■■■■■ 4.22
Usp40Q8BWR4 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC41.38■■■■■ 4.21
Usp40Q8BWR4 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC41.35■■■■■ 4.21
Usp40Q8BWR4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC41.16■■■■■ 4.18
Usp40Q8BWR4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC41.15■■■■■ 4.18
Usp40Q8BWR4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC41.06■■■■■ 4.16
Usp40Q8BWR4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC41.02■■■■■ 4.16
Usp40Q8BWR4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC40.96■■■■■ 4.15
Usp40Q8BWR4 Gm25262-201ENSMUST00000174934 133 ntBASIC40.91■■■■■ 4.14
Usp40Q8BWR4 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC40.81■■■■■ 4.12
Usp40Q8BWR4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC40.78■■■■■ 4.12
Usp40Q8BWR4 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC40.75■■■■■ 4.11
Usp40Q8BWR4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC40.74■■■■■ 4.11
Usp40Q8BWR4 Rab21-202ENSMUST00000218831 843 ntBASIC40.67■■■■■ 4.1
Usp40Q8BWR4 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC40.55■■■■■ 4.08
Usp40Q8BWR4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC40.47■■■■■ 4.07
Usp40Q8BWR4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC40.46■■■■■ 4.07
Usp40Q8BWR4 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC40.45■■■■■ 4.07
Usp40Q8BWR4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC40.35■■■■■ 4.05
Usp40Q8BWR4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC40.34■■■■■ 4.05
Usp40Q8BWR4 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC40.33■■■■■ 4.05
Usp40Q8BWR4 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC40.29■■■■■ 4.04
Usp40Q8BWR4 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC40.26■■■■■ 4.04
Usp40Q8BWR4 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC40.25■■■■■ 4.03
Usp40Q8BWR4 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC40.22■■■■■ 4.03
Usp40Q8BWR4 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC40.2■■■■■ 4.03
Usp40Q8BWR4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC40.17■■■■■ 4.02
Usp40Q8BWR4 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC40.16■■■■■ 4.02
Usp40Q8BWR4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC40.14■■■■■ 4.02
Usp40Q8BWR4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC40.13■■■■■ 4.01
Usp40Q8BWR4 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC40.11■■■■■ 4.01
Usp40Q8BWR4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC40.08■■■■■ 4.01
Usp40Q8BWR4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC40.05■■■■■ 4
Usp40Q8BWR4 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC39.97■■■■□ 3.99
Usp40Q8BWR4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC39.96■■■■□ 3.99
Usp40Q8BWR4 Gm10524-201ENSMUST00000181931 1893 ntBASIC39.96■■■■□ 3.99
Usp40Q8BWR4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC39.95■■■■□ 3.99
Usp40Q8BWR4 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC39.9■■■■□ 3.98
Usp40Q8BWR4 Gm26115-201ENSMUST00000175605 87 ntBASIC39.89■■■■□ 3.98
Usp40Q8BWR4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC39.88■■■■□ 3.98
Usp40Q8BWR4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC39.81■■■■□ 3.96
Usp40Q8BWR4 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC39.79■■■■□ 3.96
Usp40Q8BWR4 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC39.79■■■■□ 3.96
Usp40Q8BWR4 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC39.78■■■■□ 3.96
Usp40Q8BWR4 Gm8109-201ENSMUST00000194076 746 ntBASIC39.72■■■■□ 3.95
Usp40Q8BWR4 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC39.7■■■■□ 3.95
Usp40Q8BWR4 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC39.67■■■■□ 3.94
Usp40Q8BWR4 Gm42596-201ENSMUST00000196305 1958 ntBASIC39.65■■■■□ 3.94
Usp40Q8BWR4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC39.64■■■■□ 3.94
Usp40Q8BWR4 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC39.62■■■■□ 3.93
Usp40Q8BWR4 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
Usp40Q8BWR4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
Usp40Q8BWR4 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC39.44■■■■□ 3.9
Usp40Q8BWR4 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC39.43■■■■□ 3.9
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms