RNA–Protein interactions for RNA: ENSMUST00000040783.10

Usp40-201, Transcript of Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

APPRIS P3 TSL 1 (best) BASIC

Gene Usp40, Length 5,049 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40-201ENSMUST00000040783 Rhox8Q6VSS7 320 aa13.56□□□□□ -0.24
Usp40-201ENSMUST00000040783 NischQ80TM9 1593 aa12.23□□□□□ -0.45
Usp40-201ENSMUST00000040783 Esf1Q3V1V3 845 aaKnown RBP12.12□□□□□ -0.47
Usp40-201ENSMUST00000040783 Ccdc136Q3TVA9 1136 aa12.08□□□□□ -0.48
Usp40-201ENSMUST00000040783 Rpgrip1Q9EPQ2 1331 aa12.07□□□□□ -0.48
Usp40-201ENSMUST00000040783 Las1lA2BE28 776 aaKnown RBP12.02□□□□□ -0.49
Usp40-201ENSMUST00000040783 Cngb1E1AZ71 1325 aa11.98□□□□□ -0.49
Usp40-201ENSMUST00000040783 Trim41Q5NCC3 630 aa11.92□□□□□ -0.5
Usp40-201ENSMUST00000040783 Zeb1Q64318 1117 aa11.82□□□□□ -0.52
Usp40-201ENSMUST00000040783 Amer1Q7TS75 1132 aa11.81□□□□□ -0.52
Usp40-201ENSMUST00000040783 Npm2Q80W85 207 aa11.74□□□□□ -0.53
Usp40-201ENSMUST00000040783 Gab3Q8BSM5 595 aa11.69□□□□□ -0.54
Usp40-201ENSMUST00000040783 Myt1Q8CFC2 1127 aa11.66□□□□□ -0.54
Usp40-201ENSMUST00000040783 Ehmt2Q9Z148 1263 aaKnown RBP11.66□□□□□ -0.54
Usp40-201ENSMUST00000040783 Ube2uB1AUC4 352 aa11.62□□□□□ -0.55
Usp40-201ENSMUST00000040783 Abcc9P70170 1546 aa11.6□□□□□ -0.55
Usp40-201ENSMUST00000040783 Myt1lP97500 1187 aa11.57□□□□□ -0.56
Usp40-201ENSMUST00000040783 DiexfQ8BTT6 772 aaKnown RBP11.51□□□□□ -0.57
Usp40-201ENSMUST00000040783 CenpbP27790 599 aa11.47□□□□□ -0.57
Usp40-201ENSMUST00000040783 Pelp1Q9DBD5 1123 aaKnown RBP11.41□□□□□ -0.58
Usp40-201ENSMUST00000040783 Il27Q8K3I6 234 aa11.41□□□□□ -0.58
Usp40-201ENSMUST00000040783 Gm35339A0A140LHH9 1649 aa11.39□□□□□ -0.59
Usp40-201ENSMUST00000040783 Zcchc6Q5BLK4 1491 aaKnown RBP11.37□□□□□ -0.59
Usp40-201ENSMUST00000040783 Wdr66E9Q743 1299 aa11.33□□□□□ -0.6
Usp40-201ENSMUST00000040783 Acin1Q9JIX8 1338 aaKnown RBP11.28□□□□□ -0.6
Usp40-201ENSMUST00000040783 Pcgf6Q99NA9 353 aa11.25□□□□□ -0.61
Usp40-201ENSMUST00000040783 Abcc8B2RUS7 1588 aa11.21□□□□□ -0.62
Usp40-201ENSMUST00000040783 HrcG5E8J6 738 aa11.18□□□□□ -0.62
Usp40-201ENSMUST00000040783 UbtfP25976 765 aaKnown RBP11.17□□□□□ -0.62
Usp40-201ENSMUST00000040783 Ccdc180J3QNE4 1664 aa11.11□□□□□ -0.63
Usp40-201ENSMUST00000040783 Npm1Q61937 292 aaKnown RBP11.09□□□□□ -0.63
Usp40-201ENSMUST00000040783 Rtl1Q7M732 1744 aa11.04□□□□□ -0.64
Usp40-201ENSMUST00000040783 NefmP08553 848 aa11.02□□□□□ -0.64
Usp40-201ENSMUST00000040783 Ap3b1Q9Z1T1 1105 aa11.01□□□□□ -0.65
Usp40-201ENSMUST00000040783 Fam50aQ9WV03 339 aaKnown RBP10.94□□□□□ -0.66
Usp40-201ENSMUST00000040783 Neurod1Q60867 357 aa10.91□□□□□ -0.66
Usp40-201ENSMUST00000040783 Supt5hO55201 1082 aaKnown RBP10.88□□□□□ -0.67
Usp40-201ENSMUST00000040783 Brd4Q9ESU6 1400 aaKnown RBP10.84□□□□□ -0.67
Usp40-201ENSMUST00000040783 Stra8P70278 393 aa10.83□□□□□ -0.68
Usp40-201ENSMUST00000040783 Ubl4bQ9CQ84 188 aa10.83□□□□□ -0.68
Usp40-201ENSMUST00000040783 4930567H17RikQ3V0K5 233 aa10.82□□□□□ -0.68
Usp40-201ENSMUST00000040783 Os9Q8K2C7 672 aa10.82□□□□□ -0.68
Usp40-201ENSMUST00000040783 Ttbk1Q6PCN3 1308 aa10.82□□□□□ -0.68
Usp40-201ENSMUST00000040783 NclP09405 707 aaKnown RBP10.79□□□□□ -0.68
Usp40-201ENSMUST00000040783 Slc24a1Q91WD8 1130 aa10.78□□□□□ -0.68
Usp40-201ENSMUST00000040783 Ifnlr1Q8CGK5 535 aa10.77□□□□□ -0.69
Usp40-201ENSMUST00000040783 Anp32bQ9EST5 272 aaKnown RBP10.76□□□□□ -0.69
Usp40-201ENSMUST00000040783 NacadQ5SWP3 1504 aa10.75□□□□□ -0.69
Usp40-201ENSMUST00000040783 Rb1cc1Q9ESK9 1588 aa10.74□□□□□ -0.69
Usp40-201ENSMUST00000040783 Lmod2Q3UHZ5 550 aa10.74□□□□□ -0.69
Usp40-201ENSMUST00000040783 Gm13697A2AK42 830 aa10.7□□□□□ -0.7
Usp40-201ENSMUST00000040783 1700123L14RikQ3V2K7 440 aa10.7□□□□□ -0.7
Usp40-201ENSMUST00000040783 Dcaf1Q80TR8 1506 aa10.68□□□□□ -0.7
Usp40-201ENSMUST00000040783 Zbtb7cQ8VCZ7 619 aa10.68□□□□□ -0.7
Usp40-201ENSMUST00000040783 Hnrnpul2Q00PI9 745 aaKnown RBP10.68□□□□□ -0.7
Usp40-201ENSMUST00000040783 Rtl5Q5DTT4 599 aa10.65□□□□□ -0.7
Usp40-201ENSMUST00000040783 NrdcQ8BHG1 1161 aa10.65□□□□□ -0.71
Usp40-201ENSMUST00000040783 Fkbp15Q6P9Q6 1216 aaKnown RBP10.64□□□□□ -0.71
Usp40-201ENSMUST00000040783 Plekhg3Q4VAC9 1341 aa10.63□□□□□ -0.71
Usp40-201ENSMUST00000040783 Bcl11aQ9QYE3 773 aa10.62□□□□□ -0.71
Usp40-201ENSMUST00000040783 Csrnp3P59055 597 aa10.58□□□□□ -0.72
Usp40-201ENSMUST00000040783 TonslQ6NZL6 1363 aa10.58□□□□□ -0.72
Usp40-201ENSMUST00000040783 4933416C03RikQ3V063 378 aa10.57□□□□□ -0.72
Usp40-201ENSMUST00000040783 Hdac5Q9Z2V6 1113 aa10.55□□□□□ -0.72
Usp40-201ENSMUST00000040783 Ercc6F8VPZ5 1481 aa10.54□□□□□ -0.72
Usp40-201ENSMUST00000040783 Chic1Q8CBW7 227 aa10.54□□□□□ -0.72
Usp40-201ENSMUST00000040783 Clip1Q922J3 1391 aa10.53□□□□□ -0.72
Usp40-201ENSMUST00000040783 Erich6D3Z6S9 713 aa10.53□□□□□ -0.72
Usp40-201ENSMUST00000040783 Ythdc1E9Q5K9 736 aaKnown RBP10.53□□□□□ -0.72
Usp40-201ENSMUST00000040783 Mier1Q5UAK0 511 aa10.52□□□□□ -0.73
Usp40-201ENSMUST00000040783 Atp1b4Q99ME6 356 aa10.51□□□□□ -0.73
Usp40-201ENSMUST00000040783 Plppr3Q7TPB0 716 aa10.51□□□□□ -0.73
Usp40-201ENSMUST00000040783 Cdk11bP24788 784 aaKnown RBP10.51□□□□□ -0.73
Usp40-201ENSMUST00000040783 Rsf1E9PWW9 1441 aaKnown RBP10.5□□□□□ -0.73
Usp40-201ENSMUST00000040783 Gm13695A2AK44 830 aa10.49□□□□□ -0.73
Usp40-201ENSMUST00000040783 Baz1aO88379 1555 aa10.49□□□□□ -0.73
Usp40-201ENSMUST00000040783 Anks4bQ8K3X6 423 aa10.49□□□□□ -0.73
Usp40-201ENSMUST00000040783 Kif15Q6P9L6 1387 aa10.49□□□□□ -0.73
Usp40-201ENSMUST00000040783 Cep164Q5DU05 1446 aa10.48□□□□□ -0.73
Usp40-201ENSMUST00000040783 NeflP08551 543 aa10.46□□□□□ -0.74
Usp40-201ENSMUST00000040783 Kdm5dQ62240 1548 aa10.43□□□□□ -0.74
Usp40-201ENSMUST00000040783 Ppargc1bQ8VHJ7 1014 aa10.41□□□□□ -0.74
Usp40-201ENSMUST00000040783 Nop58Q6DFW4 536 aaKnown RBP10.41□□□□□ -0.74
Usp40-201ENSMUST00000040783 Ccdc18Q640L5 1455 aa10.4□□□□□ -0.74
Usp40-201ENSMUST00000040783 Ccer2J3QPU5 274 aa10.4□□□□□ -0.75
Usp40-201ENSMUST00000040783 Eif5bQ05D44 1216 aaKnown RBP10.39□□□□□ -0.75
Usp40-201ENSMUST00000040783 Aplp2Q06335 707 aa10.39□□□□□ -0.75
Usp40-201ENSMUST00000040783 Safb2Q80YR5 991 aaKnown RBP10.39□□□□□ -0.75
Usp40-201ENSMUST00000040783 Sall2Q9QX96 1004 aa10.39□□□□□ -0.75
Usp40-201ENSMUST00000040783 Tnnt3Q9QZ47 272 aa10.39□□□□□ -0.75
Usp40-201ENSMUST00000040783 Pds5bQ4VA53 1446 aaKnown RBP10.38□□□□□ -0.75
Usp40-201ENSMUST00000040783 Zbtb4Q5F293 982 aa10.38□□□□□ -0.75
Usp40-201ENSMUST00000040783 Golga3P55937 1487 aa10.36□□□□□ -0.75
Usp40-201ENSMUST00000040783 Clstn2Q9ER65 966 aa10.36□□□□□ -0.75
Usp40-201ENSMUST00000040783 BlmO88700 1416 aa10.34□□□□□ -0.75
Usp40-201ENSMUST00000040783 Setd5Q5XJV7 1441 aa10.32□□□□□ -0.76
Usp40-201ENSMUST00000040783 Eid3Q3V124 375 aa10.32□□□□□ -0.76
Usp40-201ENSMUST00000040783 Chic2Q9D9G3 165 aa10.32□□□□□ -0.76
Usp40-201ENSMUST00000040783 Gm38655A0A286YDK6 273 aa10.32□□□□□ -0.76
Usp40-201ENSMUST00000040783 Nlrp6Q91WS2 869 aa10.32□□□□□ -0.76
Retrieved 100 of 22,080 RNA–protein pairs in 102.1 ms