RNA–Protein interactions for RNA: ENSMUST00000113707.8

Tpm1-216, Transcript of Tropomyosin alpha-1 chain, mousemouse

TSL 1 (best) BASIC

Gene Tpm1, Length 1,898 nt, Biotype protein coding, Subcellular localisation Axon .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1-216ENSMUST00000113707 Gm28539A0A087WSL9 92 aa15.12■□□□□ 0.01
Tpm1-216ENSMUST00000113707 BikO70337 150 aa15.09■□□□□ 0.01
Tpm1-216ENSMUST00000113707 Spaca4Q80ZQ0 127 aa15.04■□□□□ -0
Tpm1-216ENSMUST00000113707 Igkv3-3A0A140T8Q0 119 aa15.01□□□□□ -0.01
Tpm1-216ENSMUST00000113707 Ryr2E9Q401 4966 aaKnown RBP15.01□□□□□ -0.01
Tpm1-216ENSMUST00000113707 Dph3Q8K0W9 82 aa15□□□□□ -0.01
Tpm1-216ENSMUST00000113707 Fat2Q5F226 4351 aa14.99□□□□□ -0.01
Tpm1-216ENSMUST00000113707 Scgb1b2O35176 93 aa14.99□□□□□ -0.01
Tpm1-216ENSMUST00000113707 Pcp4P63054 62 aa14.97□□□□□ -0.01
Tpm1-216ENSMUST00000113707 RetnlbQ99P86 105 aa14.96□□□□□ -0.01
Tpm1-216ENSMUST00000113707 SmcpP15265 143 aa14.95□□□□□ -0.02
Tpm1-216ENSMUST00000113707 SacsQ9JLC8 4582 aa14.91□□□□□ -0.02
Tpm1-216ENSMUST00000113707 Tmem258P61166 79 aa14.91□□□□□ -0.02
Tpm1-216ENSMUST00000113707 Defb12Q8K4N3 78 aa14.9□□□□□ -0.02
Tpm1-216ENSMUST00000113707 1700074P13RikQ9D9G7 251 aa14.89□□□□□ -0.03
Tpm1-216ENSMUST00000113707 Pkhd1l1Q80ZA4 4249 aa14.87□□□□□ -0.03
Tpm1-216ENSMUST00000113707 Cypt15B1AXS0 87 aa14.86□□□□□ -0.03
Tpm1-216ENSMUST00000113707 Coa6Q8BGD8 79 aa14.84□□□□□ -0.03
Tpm1-216ENSMUST00000113707 Gm19935A0A1B0GSF9 52 aa14.82□□□□□ -0.04
Tpm1-216ENSMUST00000113707 Atox1O08997 68 aaKnown RBP14.81□□□□□ -0.04
Tpm1-216ENSMUST00000113707 Spint4Q9D263 159 aa14.78□□□□□ -0.04
Tpm1-216ENSMUST00000113707 Smim20D3Z7Q2 69 aa14.78□□□□□ -0.04
Tpm1-216ENSMUST00000113707 Smlr1J3QMJ4 66 aa14.77□□□□□ -0.05
Tpm1-216ENSMUST00000113707 Gm10267M0QWD8 85 aa14.71□□□□□ -0.05
Tpm1-216ENSMUST00000113707 Defb13Q8R2I4 64 aa14.69□□□□□ -0.06
Tpm1-216ENSMUST00000113707 Rps29P62274 56 aa14.67□□□□□ -0.06
Tpm1-216ENSMUST00000113707 Vps13bQ80TY5 3993 aa14.66□□□□□ -0.06
Tpm1-216ENSMUST00000113707 Pet100P0DJE0 76 aa14.62□□□□□ -0.07
Tpm1-216ENSMUST00000113707 SnurfQ9WU12 71 aa14.61□□□□□ -0.07
Tpm1-216ENSMUST00000113707 Krtap19-5O08632 62 aa14.59□□□□□ -0.07
Tpm1-216ENSMUST00000113707 Ryr1E9PZQ0 5035 aa14.59□□□□□ -0.07
Tpm1-216ENSMUST00000113707 Rps28P62858 69 aaKnown RBP14.57□□□□□ -0.08
Tpm1-216ENSMUST00000113707 Kmt2cQ8BRH4 4903 aa14.56□□□□□ -0.08
Tpm1-216ENSMUST00000113707 Chtf8P0CG14 533 aa14.53□□□□□ -0.08
Tpm1-216ENSMUST00000113707 Coa5Q99M07 74 aa14.5□□□□□ -0.09
Tpm1-216ENSMUST00000113707 Dnah8Q91XQ0 4731 aa14.49□□□□□ -0.09
Tpm1-216ENSMUST00000113707 Serp1Q9Z1W5 66 aa14.46□□□□□ -0.09
Tpm1-216ENSMUST00000113707 Gm10160F6Y577 67 aa14.41□□□□□ -0.1
Tpm1-216ENSMUST00000113707 Gm26620Q9CY65 116 aa14.41□□□□□ -0.1
Tpm1-216ENSMUST00000113707 Fat3Q8BNA6 4555 aa14.4□□□□□ -0.1
Tpm1-216ENSMUST00000113707 Brk1Q91VR8 75 aa14.39□□□□□ -0.11
Tpm1-216ENSMUST00000113707 Lrp1Q91ZX7 4545 aaKnown RBP14.38□□□□□ -0.11
Tpm1-216ENSMUST00000113707 Defb38Q7TNV7 63 aa14.33□□□□□ -0.12
Tpm1-216ENSMUST00000113707 Cdc42se1Q8BHL7 80 aa14.32□□□□□ -0.12
Tpm1-216ENSMUST00000113707 Gm11939A2A592 99 aa14.31□□□□□ -0.12
Tpm1-216ENSMUST00000113707 D6Ertd527eA0A0N4SWI3 464 aa14.28□□□□□ -0.12
Tpm1-216ENSMUST00000113707 A530084C06RikQ3UTW2 186 aa14.21□□□□□ -0.13
Tpm1-216ENSMUST00000113707 Krtap3-2Q9D638 99 aa14.21□□□□□ -0.14
Tpm1-216ENSMUST00000113707 Krtap3-3Q9D7P0 99 aa14.21□□□□□ -0.14
Tpm1-216ENSMUST00000113707 Gm10643Q3URG9 111 aa14.18□□□□□ -0.14
Tpm1-216ENSMUST00000113707 Gm21798J3QNU5 87 aa14.17□□□□□ -0.14
Tpm1-216ENSMUST00000113707 Gm10197F6QEY5 67 aa14.13□□□□□ -0.15
Tpm1-216ENSMUST00000113707 Gm9736A0A1W2P7N1 277 aa14.12□□□□□ -0.15
Tpm1-216ENSMUST00000113707 Gm10999F6Q4M4 69 aa14.1□□□□□ -0.15
Tpm1-216ENSMUST00000113707 Gm5767A0A0J9YTU8 78 aa14.09□□□□□ -0.15
Tpm1-216ENSMUST00000113707 Q8BGJ3 129 aa14.05□□□□□ -0.16
Tpm1-216ENSMUST00000113707 Abca13Q5SSE9 5034 aa14.03□□□□□ -0.16
Tpm1-216ENSMUST00000113707 Dnhd1D3Z2X2 4750 aa14□□□□□ -0.17
Tpm1-216ENSMUST00000113707 A930033H14RikG5E8X6 103 aa14□□□□□ -0.17
Tpm1-216ENSMUST00000113707 H2al1aQ5M8Q2 105 aa13.96□□□□□ -0.17
Tpm1-216ENSMUST00000113707 2310034C09RikQ9D746 214 aa13.96□□□□□ -0.17
Tpm1-216ENSMUST00000113707 Gm4491E0CX42 125 aa13.95□□□□□ -0.18
Tpm1-216ENSMUST00000113707 Phxr4P15974 95 aa13.93□□□□□ -0.18
Tpm1-216ENSMUST00000113707 Gm5965D3Z724 196 aa13.9□□□□□ -0.18
Tpm1-216ENSMUST00000113707 Birc6O88738 4882 aa13.88□□□□□ -0.19
Tpm1-216ENSMUST00000113707 2310079G19RikQ9D6L6 185 aa13.88□□□□□ -0.19
Tpm1-216ENSMUST00000113707 Mycbp2Q7TPH6 4711 aa13.87□□□□□ -0.19
Tpm1-216ENSMUST00000113707 Herc2Q4U2R1 4836 aa13.87□□□□□ -0.19
Tpm1-216ENSMUST00000113707 Gm20661K7N787 53 aa13.87□□□□□ -0.19
Tpm1-216ENSMUST00000113707 4930507D05RikQ8C9C9 103 aa13.84□□□□□ -0.19
Tpm1-216ENSMUST00000113707 H2al1eQ810S6 105 aa13.8□□□□□ -0.2
Tpm1-216ENSMUST00000113707 Kiaa1109A2AAE1 5005 aa13.79□□□□□ -0.2
Tpm1-216ENSMUST00000113707 Rpl37Q9D823 97 aa13.7□□□□□ -0.22
Tpm1-216ENSMUST00000113707 Krtap15-1Q9QZU5 150 aa13.7□□□□□ -0.22
Tpm1-216ENSMUST00000113707 H2al1bA0A087WP11 105 aa13.63□□□□□ -0.23
Tpm1-216ENSMUST00000113707 9230102O04RikA2ASX7 82 aa13.59□□□□□ -0.23
Tpm1-216ENSMUST00000113707 Defb1P56386 69 aa13.59□□□□□ -0.23
Tpm1-216ENSMUST00000113707 Rnase13Q5GAM7 153 aa13.59□□□□□ -0.23
Tpm1-216ENSMUST00000113707 Gm9821Q8K076 103 aa13.58□□□□□ -0.24
Tpm1-216ENSMUST00000113707 SptssbQ925E8 76 aa13.58□□□□□ -0.24
Tpm1-216ENSMUST00000113707 Ndufb1P0DN34 57 aa13.54□□□□□ -0.24
Tpm1-216ENSMUST00000113707 Uqcr11Q9CPX8 56 aa13.54□□□□□ -0.24
Tpm1-216ENSMUST00000113707 SvipQ3UZP4 77 aa13.52□□□□□ -0.25
Tpm1-216ENSMUST00000113707 Limd2Q8BGB5 128 aa13.51□□□□□ -0.25
Tpm1-216ENSMUST00000113707 Gm10337F7DEP7 55 aa13.44□□□□□ -0.26
Tpm1-216ENSMUST00000113707 HydinQ80W93 5154 aa13.44□□□□□ -0.26
Tpm1-216ENSMUST00000113707 Sox16Q62247 57 aa13.39□□□□□ -0.27
Tpm1-216ENSMUST00000113707 H2al1kJ3QP08 105 aa13.36□□□□□ -0.27
Tpm1-216ENSMUST00000113707 H2al1mQ9DAD9 105 aa13.36□□□□□ -0.27
Tpm1-216ENSMUST00000113707 Gm17416Q30KP4 66 aa13.32□□□□□ -0.28
Tpm1-216ENSMUST00000113707 4933415A04RikQ9D443 101 aa13.28□□□□□ -0.28
Tpm1-216ENSMUST00000113707 Lrp2A2ARV4 4660 aa13.27□□□□□ -0.28
Tpm1-216ENSMUST00000113707 Cox6b2Q80ZN9 88 aa13.27□□□□□ -0.29
Tpm1-216ENSMUST00000113707 Sec61bQ9CQS8 96 aaKnown RBP13.09□□□□□ -0.31
Tpm1-216ENSMUST00000113707 Lce1mQ9CR91 182 aa13.02□□□□□ -0.33
Tpm1-216ENSMUST00000113707 PcloQ9QYX7 5068 aa12.99□□□□□ -0.33
Tpm1-216ENSMUST00000113707 Sec61gP60060 68 aa12.99□□□□□ -0.33
Tpm1-216ENSMUST00000113707 2210017I01RikA0A0A6YVV1 95 aa12.95□□□□□ -0.34
Tpm1-216ENSMUST00000113707 2310057N15RikQ9D6T8 200 aa12.94□□□□□ -0.34
Tpm1-216ENSMUST00000113707 Gm17606F6ZL36 78 aa12.93□□□□□ -0.34
Retrieved 100 of 22,080 RNA–protein pairs in 52.4 ms