RNA–Protein interactions for RNA: YOR217W

RFC1, Transcript of Subunit of heteropentameric Replication factor C (RF-C), yeast

Gene RFC1, Length 2,586 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RFC1	YOR217W	TCB2	P48231	1178 aa		10.58	□□□□□ -0.72
RFC1	YOR217W	YNL011C	P53980	444 aa		10.58	□□□□□ -0.72
RFC1	YOR217W	CEF1	Q03654	590 aa	Predicted RBP	10.56	□□□□□ -0.72
RFC1	YOR217W	ETT1	Q08421	412 aa	Known RBP	10.56	□□□□□ -0.72
RFC1	YOR217W	AIM21	P40563	679 aa		10.55	□□□□□ -0.72
RFC1	YOR217W	DOS2	P54858	310 aa		10.55	□□□□□ -0.72
RFC1	YOR217W	FUN12	P39730	1002 aa	Known RBP	10.54	□□□□□ -0.72
RFC1	YOR217W	PLP2	Q12017	286 aa		10.54	□□□□□ -0.72
RFC1	YOR217W	FPR3	P38911	411 aa	Known RBP	10.54	□□□□□ -0.72
RFC1	YOR217W	YGR130C	P53278	816 aa		10.53	□□□□□ -0.72
RFC1	YOR217W	RAD2	P07276	1031 aa		10.52	□□□□□ -0.73
RFC1	YOR217W	YMR196W	Q04336	1088 aa		10.52	□□□□□ -0.73
RFC1	YOR217W	TY1B-DR4	Q07793	1604 aa		10.52	□□□□□ -0.73
RFC1	YOR217W	SEC20	P28791	383 aa		10.51	□□□□□ -0.73
RFC1	YOR217W	PSK2	Q08217	1101 aa		10.51	□□□□□ -0.73
RFC1	YOR217W	LEM3	P42838	414 aa		10.49	□□□□□ -0.73
RFC1	YOR217W	PKH1	Q03407	766 aa		10.49	□□□□□ -0.73
RFC1	YOR217W	RPA135	P22138	1203 aa	Known RBP	10.48	□□□□□ -0.73
RFC1	YOR217W	YSH1	Q06224	779 aa	Predicted RBP	10.47	□□□□□ -0.73
RFC1	YOR217W	GAL11	P19659	1081 aa		10.47	□□□□□ -0.73
RFC1	YOR217W	PAM1	P37304	830 aa	Known RBP	10.46	□□□□□ -0.73
RFC1	YOR217W	SSA4	P22202	642 aa	Known RBP	10.45	□□□□□ -0.74
RFC1	YOR217W	YTA7	P40340	1379 aa		10.45	□□□□□ -0.74
RFC1	YOR217W	TY4A-J	P47023	414 aa		10.45	□□□□□ -0.74
RFC1	YOR217W	RAD51	P25454	400 aa		10.44	□□□□□ -0.74
RFC1	YOR217W	HOS4	P40480	1083 aa		10.44	□□□□□ -0.74
RFC1	YOR217W	MRX12	P47084	519 aa		10.43	□□□□□ -0.74
RFC1	YOR217W	SUP35	P05453	685 aa	Known RBP	10.42	□□□□□ -0.74
RFC1	YOR217W	PEA2	P40091	420 aa		10.42	□□□□□ -0.74
RFC1	YOR217W	RPT2	P40327	437 aa	Known RBP	10.42	□□□□□ -0.74
RFC1	YOR217W	PMC1	P38929	1173 aa	Predicted RBP	10.42	□□□□□ -0.74
RFC1	YOR217W	GDE1	Q02979	1223 aa		10.41	□□□□□ -0.74
RFC1	YOR217W	GIR2	Q03768	265 aa	Predicted RBP	10.41	□□□□□ -0.74
RFC1	YOR217W	PIL1	P53252	339 aa	Known RBP	10.41	□□□□□ -0.74
RFC1	YOR217W	MPE1	P35728	441 aa	Known RBP	10.4	□□□□□ -0.74
RFC1	YOR217W	DJP1	P40564	432 aa		10.4	□□□□□ -0.74
RFC1	YOR217W	SPC110	P32380	944 aa		10.4	□□□□□ -0.74
RFC1	YOR217W	NFU1	P32860	256 aa		10.39	□□□□□ -0.75
RFC1	YOR217W	FAF1	P40546	346 aa	Predicted RBP	10.39	□□□□□ -0.75
RFC1	YOR217W	RIX7	Q07844	837 aa	Known RBP	10.39	□□□□□ -0.75
RFC1	YOR217W	NMD3	P38861	518 aa	Known RBP	10.39	□□□□□ -0.75
RFC1	YOR217W	TAF1	P46677	1066 aa		10.39	□□□□□ -0.75
RFC1	YOR217W	ECM16	Q04217	1267 aa	Known RBP	10.39	□□□□□ -0.75
RFC1	YOR217W	UBX5	Q06682	500 aa		10.38	□□□□□ -0.75
RFC1	YOR217W	NMD2	P38798	1089 aa	Known RBP	10.37	□□□□□ -0.75
RFC1	YOR217W	OCA5	P38738	679 aa		10.36	□□□□□ -0.75
RFC1	YOR217W	SLX8	P40072	274 aa		10.36	□□□□□ -0.75
RFC1	YOR217W	MTR4	P47047	1073 aa	Known RBP	10.36	□□□□□ -0.75
RFC1	YOR217W	VPS4	P52917	437 aa		10.36	□□□□□ -0.75
RFC1	YOR217W	MEH1	Q02205	184 aa		10.36	□□□□□ -0.75
RFC1	YOR217W	CFT2	Q12102	859 aa	Predicted RBP	10.36	□□□□□ -0.75
RFC1	YOR217W	CLF1	Q12309	687 aa	Predicted RBP	10.36	□□□□□ -0.75
RFC1	YOR217W	RRP14	P36080	434 aa	Known RBP	10.35	□□□□□ -0.75
RFC1	YOR217W	RCF1	Q03713	159 aa		10.35	□□□□□ -0.75
RFC1	YOR217W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	10.35	□□□□□ -0.75	not detected
RFC1	YOR217W	PIM1	P36775	1133 aa		10.33	□□□□□ -0.76
RFC1	YOR217W	CDC45	Q08032	650 aa		10.33	□□□□□ -0.76
RFC1	YOR217W	SPB4	P25808	606 aa	Predicted RBP	10.33	□□□□□ -0.76
RFC1	YOR217W	NNF2	P53253	936 aa		10.33	□□□□□ -0.76
RFC1	YOR217W	HXT5	P38695	592 aa		10.32	□□□□□ -0.76
RFC1	YOR217W	PES4	P39684	611 aa		10.31	□□□□□ -0.76
RFC1	YOR217W	YLR257W	Q06146	321 aa	Known RBP	10.31	□□□□□ -0.76
RFC1	YOR217W	NPL4	P33755	580 aa		10.3	□□□□□ -0.76
RFC1	YOR217W	AIM20	P40451	204 aa		10.3	□□□□□ -0.76
RFC1	YOR217W	CKB1	P43639	278 aa		10.3	□□□□□ -0.76
RFC1	YOR217W	YDR341C	Q05506	607 aa	Known RBP	10.3	□□□□□ -0.76
RFC1	YOR217W	MON2	P48563	1636 aa	Predicted RBP	10.3	□□□□□ -0.76
RFC1	YOR217W	POL5	P39985	1022 aa	Known RBP	10.29	□□□□□ -0.76
RFC1	YOR217W	SVL3	Q03088	825 aa	Known RBP	10.29	□□□□□ -0.76
RFC1	YOR217W	VPS5	Q92331	675 aa		10.29	□□□□□ -0.76
RFC1	YOR217W	UBP1	P25037	809 aa		10.28	□□□□□ -0.76
RFC1	YOR217W	HSL1	P34244	1518 aa		10.27	□□□□□ -0.76
RFC1	YOR217W	MAM3	Q12296	706 aa		10.27	□□□□□ -0.76
RFC1	YOR217W	PSR1	Q07800	427 aa		10.26	□□□□□ -0.77
RFC1	YOR217W	CDC11	P32458	415 aa		10.25	□□□□□ -0.77
RFC1	YOR217W	MSH3	P25336	1018 aa		10.24	□□□□□ -0.77
RFC1	YOR217W	RSC8	P43609	557 aa	Known RBP	10.24	□□□□□ -0.77
RFC1	YOR217W	BOI2	P39969	1040 aa		10.23	□□□□□ -0.77
RFC1	YOR217W	NOP7	P53261	605 aa	Known RBP	10.23	□□□□□ -0.77
RFC1	YOR217W	PTP3	P40048	928 aa		10.23	□□□□□ -0.77
RFC1	YOR217W	JIP5	Q06214	492 aa	Predicted RBP	10.22	□□□□□ -0.77
RFC1	YOR217W	SNU66	Q12420	587 aa	Predicted RBP	10.22	□□□□□ -0.77
RFC1	YOR217W	HEL2	Q05580	639 aa	Known RBP	10.22	□□□□□ -0.77
RFC1	YOR217W	YLL054C	Q12244	843 aa		10.22	□□□□□ -0.77
RFC1	YOR217W	YNL058C	P53947	316 aa		10.21	□□□□□ -0.77
RFC1	YOR217W	RPN7	Q06103	429 aa	Known RBP	10.21	□□□□□ -0.77
RFC1	YOR217W	YDL121C	Q07541	149 aa		10.21	□□□□□ -0.78
RFC1	YOR217W	APL5	Q08951	932 aa	Known RBP	10.21	□□□□□ -0.78
RFC1	YOR217W	VMA4	P22203	233 aa	Known RBP	10.21	□□□□□ -0.78
RFC1	YOR217W	SPT6	P23615	1451 aa	Known RBP	10.2	□□□□□ -0.78
RFC1	YOR217W	CMP2	P14747	604 aa		10.2	□□□□□ -0.78
RFC1	YOR217W	HSC82	P15108	705 aa	Known RBP	10.2	□□□□□ -0.78
RFC1	YOR217W	SEC27	P41811	889 aa	Known RBP	10.19	□□□□□ -0.78
RFC1	YOR217W	SAP190	P36123	1033 aa		10.19	□□□□□ -0.78
RFC1	YOR217W	BNI4	P53858	892 aa		10.19	□□□□□ -0.78
RFC1	YOR217W	PWP2	P25635	923 aa	Known RBP	10.18	□□□□□ -0.78
RFC1	YOR217W	DEP1	P31385	405 aa		10.18	□□□□□ -0.78
RFC1	YOR217W	RKM3	P38222	552 aa		10.18	□□□□□ -0.78
RFC1	YOR217W	IMH1	Q06704	911 aa	Known RBP	10.18	□□□□□ -0.78
RFC1	YOR217W	SEC3	P33332	1336 aa	Known RBP	10.17	□□□□□ -0.78

Retrieved 100 of 5,963 RNA–protein pairs in 30.9 ms