RNA–Protein interactions for RNA: YOR217W

RFC1, Transcript of Subunit of heteropentameric Replication factor C (RF-C), yeast

Gene RFC1, Length 2,586 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RFC1	YOR217W	RQC2	Q12532	1038 aa	Known RBP	15.27	■□□□□ 0.03
RFC1	YOR217W	BFR2	Q06631	534 aa	Known RBP	14.14	□□□□□ -0.15
RFC1	YOR217W	TAF7	Q05021	590 aa		13.89	□□□□□ -0.19
RFC1	YOR217W	TFA1	P36100	482 aa		13.57	□□□□□ -0.24
RFC1	YOR217W	DRS1	P32892	752 aa	Known RBP	13.35	□□□□□ -0.27
RFC1	YOR217W	URN1	Q06525	465 aa	Known RBP	13.29	□□□□□ -0.28
RFC1	YOR217W	SIS2	P36024	562 aa		12.5	□□□□□ -0.41
RFC1	YOR217W	AVT3	P36062	692 aa		12.49	□□□□□ -0.41
RFC1	YOR217W	IOC4	Q04213	475 aa		12.46	□□□□□ -0.42
RFC1	YOR217W	YFR016C	P43597	1233 aa	Known RBP	12.41	□□□□□ -0.42
RFC1	YOR217W	NAP1	P25293	417 aa	Known RBP	12.28	□□□□□ -0.44
RFC1	YOR217W	EBP2	P36049	427 aa	Known RBP	12.24	□□□□□ -0.45
RFC1	YOR217W	LEO1	P38439	464 aa		12.18	□□□□□ -0.46
RFC1	YOR217W	KRI1	P42846	591 aa	Known RBP	12.12	□□□□□ -0.47
RFC1	YOR217W	DIP2	Q12220	943 aa	Predicted RBP	12.11	□□□□□ -0.47
RFC1	YOR217W	CAB3	P36076	571 aa		12.11	□□□□□ -0.47
RFC1	YOR217W	DMA1	P38823	416 aa		12.04	□□□□□ -0.48
RFC1	YOR217W	IFH1	P39520	1085 aa		12.02	□□□□□ -0.49
RFC1	YOR217W	YRB30	P53107	440 aa	Predicted RBP	11.98	□□□□□ -0.49
RFC1	YOR217W	ORC1	P54784	914 aa	Predicted RBP	11.91	□□□□□ -0.5
RFC1	YOR217W	CWC22	P53333	577 aa	Known RBP	11.86	□□□□□ -0.51
RFC1	YOR217W	RPS0B	P46654	252 aa	Known RBP	11.84	□□□□□ -0.51
RFC1	YOR217W	ABP1	P15891	592 aa	Known RBP	11.71	□□□□□ -0.54
RFC1	YOR217W	NOP2	P40991	618 aa	Known RBP	11.67	□□□□□ -0.54
RFC1	YOR217W	SNU71	P53207	620 aa	Known RBP	11.67	□□□□□ -0.54
RFC1	YOR217W	PSH1	Q12161	406 aa		11.58	□□□□□ -0.56
RFC1	YOR217W	RLP24	Q07915	199 aa	Known RBP	11.56	□□□□□ -0.56
RFC1	YOR217W	TOP1	P04786	769 aa		11.51	□□□□□ -0.57
RFC1	YOR217W	MDG1	P53885	366 aa		11.46	□□□□□ -0.58
RFC1	YOR217W	AIM44	Q99299	758 aa		11.44	□□□□□ -0.58
RFC1	YOR217W	YPR148C	Q06523	435 aa		11.41	□□□□□ -0.58
RFC1	YOR217W	ATG36	P46983	293 aa		11.38	□□□□□ -0.59
RFC1	YOR217W	SWE1	P32944	819 aa		11.35	□□□□□ -0.59
RFC1	YOR217W	ENV11	P53246	860 aa		11.33	□□□□□ -0.6
RFC1	YOR217W	MNN4	P36044	1178 aa		11.3	□□□□□ -0.6
RFC1	YOR217W	DEF1	P35732	738 aa	Known RBP	11.29	□□□□□ -0.6
RFC1	YOR217W	DMA2	P53924	522 aa		11.23	□□□□□ -0.61
RFC1	YOR217W	TPO2	P53283	614 aa		11.19	□□□□□ -0.62
RFC1	YOR217W	GIN4	Q12263	1142 aa		11.19	□□□□□ -0.62
RFC1	YOR217W	LEU3	P08638	886 aa		11.15	□□□□□ -0.62
RFC1	YOR217W	MTC1	P47018	478 aa	Known RBP	11.14	□□□□□ -0.63
RFC1	YOR217W	SUB1	P54000	292 aa	Known RBP	11.11	□□□□□ -0.63
RFC1	YOR217W	TOA1	P32773	286 aa		11.1	□□□□□ -0.63
RFC1	YOR217W	ISW1	P38144	1129 aa		11.1	□□□□□ -0.63
RFC1	YOR217W	LAM6	Q08001	693 aa		11.1	□□□□□ -0.63
RFC1	YOR217W	RSE1	Q04693	1361 aa	Known RBP	11.09	□□□□□ -0.63
RFC1	YOR217W	SSA1	P10591	642 aa	Known RBP	11.08	□□□□□ -0.64
RFC1	YOR217W	SSA2	P10592	639 aa	Known RBP	11.08	□□□□□ -0.64
RFC1	YOR217W	RPN1	P38764	993 aa	Known RBP	11.04	□□□□□ -0.64
RFC1	YOR217W	TIF4632	P39936	914 aa	Known RBP	11.04	□□□□□ -0.64
RFC1	YOR217W	HIF1	Q12373	385 aa		11.04	□□□□□ -0.64
RFC1	YOR217W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	11.02	□□□□□ -0.65	not detected
RFC1	YOR217W	NUG1	P40010	520 aa	Known RBP	11	□□□□□ -0.65
RFC1	YOR217W	INO80	P53115	1489 aa		11	□□□□□ -0.65
RFC1	YOR217W	GRX3	Q03835	250 aa		10.97	□□□□□ -0.65
RFC1	YOR217W	NHA1	Q99271	985 aa		10.97	□□□□□ -0.65
RFC1	YOR217W	SPT2	P06843	333 aa	Predicted RBP	10.96	□□□□□ -0.66
RFC1	YOR217W	BRL1	P38770	471 aa		10.95	□□□□□ -0.66
RFC1	YOR217W	SGS1	P35187	1447 aa		10.95	□□□□□ -0.66
RFC1	YOR217W	DAL5	P15365	543 aa		10.93	□□□□□ -0.66
RFC1	YOR217W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	10.93	□□□□□ -0.66	not detected
RFC1	YOR217W	RLF2	Q12495	606 aa		10.9	□□□□□ -0.66
RFC1	YOR217W	QCR6	P00127	147 aa		10.9	□□□□□ -0.66
RFC1	YOR217W	SPT7	P35177	1332 aa		10.88	□□□□□ -0.67
RFC1	YOR217W	SPA2	P23201	1466 aa	Known RBP	10.85	□□□□□ -0.67
RFC1	YOR217W	VPS72	Q03388	795 aa		10.84	□□□□□ -0.67
RFC1	YOR217W	NOP8	Q08287	484 aa	Predicted RBP	10.84	□□□□□ -0.67
RFC1	YOR217W	SAS10	Q12136	610 aa	Predicted RBP	10.84	□□□□□ -0.67
RFC1	YOR217W	SPT21	P35209	758 aa		10.82	□□□□□ -0.68
RFC1	YOR217W	BRN1	P38170	754 aa		10.81	□□□□□ -0.68
RFC1	YOR217W	FAR11	P53917	953 aa		10.8	□□□□□ -0.68
RFC1	YOR217W	TLG1	Q03322	224 aa		10.8	□□□□□ -0.68
RFC1	YOR217W	TAF13	P11747	167 aa		10.8	□□□□□ -0.68
RFC1	YOR217W	RPS0A	P32905	252 aa	Known RBP	10.77	□□□□□ -0.69
RFC1	YOR217W	BUD21	Q08492	214 aa	Predicted RBP	10.77	□□□□□ -0.69
RFC1	YOR217W	SSP1	P38871	571 aa		10.76	□□□□□ -0.69
RFC1	YOR217W	YML020W	Q03722	664 aa		10.74	□□□□□ -0.69
RFC1	YOR217W	OSW7	P43611	510 aa		10.72	□□□□□ -0.69
RFC1	YOR217W	MCM1	P11746	286 aa		10.71	□□□□□ -0.69
RFC1	YOR217W	SPT16	P32558	1035 aa	Known RBP	10.71	□□□□□ -0.69
RFC1	YOR217W	TCB3	Q03640	1545 aa	Known RBP	10.69	□□□□□ -0.7
RFC1	YOR217W	RNA1	P11745	407 aa	Known RBP	10.68	□□□□□ -0.7
RFC1	YOR217W	MPP10	P47083	593 aa	Known RBP	10.68	□□□□□ -0.7
RFC1	YOR217W	PDR1	P12383	1068 aa		10.67	□□□□□ -0.7
RFC1	YOR217W	ASF1	P32447	279 aa		10.67	□□□□□ -0.7
RFC1	YOR217W	ZDS1	P50111	915 aa	Known RBP	10.67	□□□□□ -0.7
RFC1	YOR217W	SSF1	P38789	453 aa	Predicted RBP	10.66	□□□□□ -0.7
RFC1	YOR217W	SPC42	P36094	363 aa		10.65	□□□□□ -0.7
RFC1	YOR217W	YJR008W	P47085	338 aa		10.65	□□□□□ -0.7
RFC1	YOR217W	KIP3	P53086	805 aa	Known RBP	10.64	□□□□□ -0.71
RFC1	YOR217W	NOP53	Q12080	455 aa	Known RBP	10.64	□□□□□ -0.71
RFC1	YOR217W	SEC9	P40357	651 aa		10.63	□□□□□ -0.71
RFC1	YOR217W	RTS3	P53289	263 aa		10.63	□□□□□ -0.71
RFC1	YOR217W	FPR4	Q06205	392 aa	Predicted RBP	10.63	□□□□□ -0.71
RFC1	YOR217W	BRE1	Q07457	700 aa	Known RBP	10.63	□□□□□ -0.71
RFC1	YOR217W	GEF1	P37020	779 aa		10.61	□□□□□ -0.71
RFC1	YOR217W	HSP82	P02829	709 aa	Known RBP	10.6	□□□□□ -0.71
RFC1	YOR217W	ENP1	P38333	483 aa	Known RBP	10.6	□□□□□ -0.71
RFC1	YOR217W	TY1B-A	O13527	1196 aa	Known RBP	10.59	□□□□□ -0.71
RFC1	YOR217W	SSN2	P38931	1420 aa		10.58	□□□□□ -0.72

Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms