RNA–Protein interactions for RNA: ENST00000637572.1

CHD2-227, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 5

Gene CHD2, Length 4,452 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-227ENST00000637572 CUX2O14529 1486 aa8.05□□□□□ -1.12
CHD2-227ENST00000637572 P3H3Q8IVL6 736 aa8.04□□□□□ -1.12
CHD2-227ENST00000637572 SOGA1O94964 1423 aa8.04□□□□□ -1.12
CHD2-227ENST00000637572 CARMIL1Q5VZK9 1371 aa8.03□□□□□ -1.12
CHD2-227ENST00000637572 FANCD2Q9BXW9 1451 aa8.03□□□□□ -1.12
CHD2-227ENST00000637572 CFAP44Q96MT7 982 aa8.02□□□□□ -1.13
CHD2-227ENST00000637572 TAOK2Q9UL54 1235 aa8.02□□□□□ -1.13
CHD2-227ENST00000637572 CC2D2AQ9P2K1 1620 aa8.01□□□□□ -1.13
CHD2-227ENST00000637572 ACIN1Q9UKV3 1341 aaKnown RBP8□□□□□ -1.13
CHD2-227ENST00000637572 CEP162Q5TB80 1403 aa8□□□□□ -1.13
CHD2-227ENST00000637572 CFTRP13569 1480 aa7.99□□□□□ -1.13
CHD2-227ENST00000637572 PEG3Q9GZU2 1588 aa7.99□□□□□ -1.13
CHD2-227ENST00000637572 FHAD1B1AJZ9 1412 aa7.98□□□□□ -1.13
CHD2-227ENST00000637572 MSH5O43196 834 aa7.97□□□□□ -1.13
CHD2-227ENST00000637572 MTUS2Q5JR59 1369 aa7.97□□□□□ -1.13
CHD2-227ENST00000637572 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.95□□□□□ -1.144e-7■■□□□ 12.7
CHD2-227ENST00000637572 ATF5Q9Y2D1 282 aaPredicted RBP7.95□□□□□ -1.14
CHD2-227ENST00000637572 TRIM52Q96A61 297 aa7.95□□□□□ -1.14
CHD2-227ENST00000637572 PLEKHD1A6NEE1 506 aa7.94□□□□□ -1.14
CHD2-227ENST00000637572 HRCP23327 699 aa7.94□□□□□ -1.14
CHD2-227ENST00000637572 CARMIL2Q6F5E8 1435 aa7.94□□□□□ -1.14
CHD2-227ENST00000637572 UNC13AQ9UPW8 1703 aa7.93□□□□□ -1.14
CHD2-227ENST00000637572 TDRD9Q8NDG6 1382 aaKnown RBP7.93□□□□□ -1.14
CHD2-227ENST00000637572 RAPGEF2Q9Y4G8 1499 aa7.93□□□□□ -1.14
CHD2-227ENST00000637572 PAXIP1Q6ZW49 1069 aaPredicted RBP7.92□□□□□ -1.14
CHD2-227ENST00000637572 PELP1Q8IZL8 1130 aaKnown RBP7.92□□□□□ -1.14
CHD2-227ENST00000637572 KLHL34Q8N239 644 aa7.91□□□□□ -1.14
CHD2-227ENST00000637572 ARID3CA6NKF2 412 aa7.9□□□□□ -1.14
CHD2-227ENST00000637572 ZNF777Q9ULD5 760 aaPredicted RBP7.9□□□□□ -1.15
CHD2-227ENST00000637572 LAMC3Q9Y6N6 1575 aa7.9□□□□□ -1.15
CHD2-227ENST00000637572 TSPY4P0CV99 314 aa7.9□□□□□ -1.15
CHD2-227ENST00000637572 TSPY10P0CW01 314 aa7.9□□□□□ -1.15
CHD2-227ENST00000637572 FMN1Q68DA7 1419 aa7.89□□□□□ -1.15
CHD2-227ENST00000637572 FGD5Q6ZNL6 1462 aa7.89□□□□□ -1.15
CHD2-227ENST00000637572 ATXN8OSP0DMR3 200 aa7.89□□□□□ -1.15
CHD2-227ENST00000637572 MRC2Q9UBG0 1479 aa7.88□□□□□ -1.15
CHD2-227ENST00000637572 ARID4BQ4LE39 1312 aaPredicted RBP7.88□□□□□ -1.15
CHD2-227ENST00000637572 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.88□□□□□ -1.15
CHD2-227ENST00000637572 CENPBP07199 599 aaPredicted RBP7.88□□□□□ -1.15
CHD2-227ENST00000637572 TULP1O00294 542 aaPredicted RBP7.87□□□□□ -1.15
CHD2-227ENST00000637572 FBXO3Q9UK99 471 aa7.87□□□□□ -1.15
CHD2-227ENST00000637572 VPS8Q8N3P4 1428 aa7.87□□□□□ -1.15
CHD2-227ENST00000637572 GAPVD1Q14C86 1478 aa7.86□□□□□ -1.15
CHD2-227ENST00000637572 ILDR1Q86SU0 546 aaPredicted RBP7.85□□□□□ -1.15
CHD2-227ENST00000637572 IFT140Q96RY7 1462 aa7.85□□□□□ -1.15
CHD2-227ENST00000637572 IGF1RP08069 1367 aa7.84□□□□□ -1.16
CHD2-227ENST00000637572 SPDYE4A6NLX3 237 aa7.83□□□□□ -1.16
CHD2-227ENST00000637572 VASPP50552 380 aaPredicted RBP7.83□□□□□ -1.16
CHD2-227ENST00000637572 ESF1Q9H501 851 aaKnown RBP7.83□□□□□ -1.16
CHD2-227ENST00000637572 TOP2BQ02880 1626 aa7.83□□□□□ -1.16
CHD2-227ENST00000637572 DNMBPQ6XZF7 1577 aa7.83□□□□□ -1.16
CHD2-227ENST00000637572 GRIN2BQ13224 1484 aa7.82□□□□□ -1.16
CHD2-227ENST00000637572 CFDP1Q9UEE9 299 aaPredicted RBP7.82□□□□□ -1.16
CHD2-227ENST00000637572 TOPBP1Q92547 1522 aa7.82□□□□□ -1.16
CHD2-227ENST00000637572 NESP48681 1621 aa7.8□□□□□ -1.16
CHD2-227ENST00000637572 JPH4Q96JJ6 628 aa7.8□□□□□ -1.16
CHD2-227ENST00000637572 CCNB3Q8WWL7 1395 aa7.8□□□□□ -1.16
CHD2-227ENST00000637572 FAM69CQ0P6D2 419 aa7.8□□□□□ -1.16
CHD2-227ENST00000637572 ERICH3Q5RHP9 1530 aa7.79□□□□□ -1.16
CHD2-227ENST00000637572 NEUROD1Q13562 356 aa7.79□□□□□ -1.16
CHD2-227ENST00000637572 NBR1Q14596 966 aa7.79□□□□□ -1.16
CHD2-227ENST00000637572 RAD54L2Q9Y4B4 1467 aa7.79□□□□□ -1.16
CHD2-227ENST00000637572 DMRT2Q9Y5R5 561 aa7.79□□□□□ -1.16
CHD2-227ENST00000637572 KCNH8Q96L42 1107 aa7.78□□□□□ -1.16
CHD2-227ENST00000637572 HOXD11P31277 338 aaPredicted RBP7.78□□□□□ -1.16
CHD2-227ENST00000637572 POLA1P09884 1462 aaPredicted RBP7.78□□□□□ -1.16
CHD2-227ENST00000637572 SYNJ1O43426 1573 aa7.77□□□□□ -1.17
CHD2-227ENST00000637572 CUX1P39880 1505 aa7.77□□□□□ -1.17
CHD2-227ENST00000637572 KDM2AQ9Y2K7 1162 aa7.77□□□□□ -1.17
CHD2-227ENST00000637572 KIF21BO75037 1637 aa7.76□□□□□ -1.17
CHD2-227ENST00000637572 TONSLQ96HA7 1378 aa7.76□□□□□ -1.17
CHD2-227ENST00000637572 TIMELESSQ9UNS1 1208 aa7.76□□□□□ -1.17
CHD2-227ENST00000637572 ABCA10Q8WWZ4 1543 aa7.76□□□□□ -1.17
CHD2-227ENST00000637572 ARHGAP35Q9NRY4 1499 aa7.76□□□□□ -1.17
CHD2-227ENST00000637572 ECM2O94769 699 aaPredicted RBP7.76□□□□□ -1.17
CHD2-227ENST00000637572 RUSC2Q8N2Y8 1516 aa7.75□□□□□ -1.17
CHD2-227ENST00000637572 IFNLR1Q8IU57 520 aaPredicted RBP7.75□□□□□ -1.17
CHD2-227ENST00000637572 VSIG10Q8N0Z9 540 aa7.75□□□□□ -1.17
CHD2-227ENST00000637572 RSPH4AQ5TD94 716 aa7.74□□□□□ -1.17
CHD2-227ENST00000637572 CHIC2Q9UKJ5 165 aa7.74□□□□□ -1.17
CHD2-227ENST00000637572 CLSPNQ9HAW4 1339 aa7.74□□□□□ -1.17
CHD2-227ENST00000637572 AQRO60306 1485 aaKnown RBP eCLIP7.74□□□□□ -1.175e-8■■■□□ 15
CHD2-227ENST00000637572 POLR3GLQ9BT43 218 aa7.74□□□□□ -1.17
CHD2-227ENST00000637572 CCDC18Q5T9S5 1454 aa7.74□□□□□ -1.17
CHD2-227ENST00000637572 PTPRGP23470 1445 aa7.74□□□□□ -1.17
CHD2-227ENST00000637572 PRXQ9BXM0 1461 aa7.73□□□□□ -1.17
CHD2-227ENST00000637572 FHOD3Q2V2M9 1422 aa7.72□□□□□ -1.17
CHD2-227ENST00000637572 SAMD1Q6SPF0 538 aaPredicted RBP7.72□□□□□ -1.17
CHD2-227ENST00000637572 TSHZ2Q9NRE2 1034 aa7.72□□□□□ -1.17
CHD2-227ENST00000637572 EFCAB2Q5VUJ9 269 aa7.72□□□□□ -1.17
CHD2-227ENST00000637572 DISP3Q9P2K9 1392 aa7.71□□□□□ -1.17
CHD2-227ENST00000637572 NEFLP07196 543 aa7.7□□□□□ -1.18
CHD2-227ENST00000637572 ZNF326Q5BKZ1 582 aaKnown RBP7.7□□□□□ -1.18
CHD2-227ENST00000637572 STAG3Q9UJ98 1225 aa7.7□□□□□ -1.18
CHD2-227ENST00000637572 EFCAB5A4FU69 1503 aa7.7□□□□□ -1.18
CHD2-227ENST00000637572 CHGAP10645 457 aaKnown RBP7.7□□□□□ -1.18
CHD2-227ENST00000637572 ZNF316A6NFI3 1004 aaPredicted RBP7.69□□□□□ -1.18
CHD2-227ENST00000637572 RRP7BPQ9NSQ0 103 aa7.69□□□□□ -1.18
CHD2-227ENST00000637572 CIZ1Q9ULV3 898 aaPredicted RBP7.69□□□□□ -1.18
CHD2-227ENST00000637572 PKD2Q13563 968 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms