RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 CEP170Q5SW79 1584 aa14.8□□□□□ -0.04
SS18-220ENST00000582092 IGF1RP08069 1367 aa14.77□□□□□ -0.04
SS18-220ENST00000582092 SHROOM2Q13796 1616 aa14.74□□□□□ -0.05
SS18-220ENST00000582092 CARMIL1Q5VZK9 1371 aa14.73□□□□□ -0.05
SS18-220ENST00000582092 UBTFP17480 764 aaKnown RBP14.73□□□□□ -0.05
SS18-220ENST00000582092 JPH4Q96JJ6 628 aa14.71□□□□□ -0.05
SS18-220ENST00000582092 RUSC2Q8N2Y8 1516 aa14.7□□□□□ -0.06
SS18-220ENST00000582092 KIAA0586Q9BVV6 1533 aa14.69□□□□□ -0.06
SS18-220ENST00000582092 PRG4Q92954 1404 aaPredicted RBP14.68□□□□□ -0.06
SS18-220ENST00000582092 TRHP20396 242 aaPredicted RBP14.66□□□□□ -0.06
SS18-220ENST00000582092 ERCC6L2Q5T890 1561 aa14.64□□□□□ -0.07
SS18-220ENST00000582092 RAPGEF2Q9Y4G8 1499 aa14.64□□□□□ -0.07
SS18-220ENST00000582092 GOLGA3Q08378 1498 aa14.63□□□□□ -0.07
SS18-220ENST00000582092 CARMIL2Q6F5E8 1435 aa14.6□□□□□ -0.07
SS18-220ENST00000582092 IQGAP2Q13576 1575 aa14.6□□□□□ -0.07
SS18-220ENST00000582092 TNIKQ9UKE5 1360 aa14.6□□□□□ -0.07
SS18-220ENST00000582092 NPM1P06748 294 aaKnown RBP eCLIP14.57□□□□□ -0.08
SS18-220ENST00000582092 CTTNBP2Q8WZ74 1663 aa14.55□□□□□ -0.08
SS18-220ENST00000582092 KIF21BO75037 1637 aa14.55□□□□□ -0.08
SS18-220ENST00000582092 PTPRGP23470 1445 aa14.51□□□□□ -0.09
SS18-220ENST00000582092 CEP162Q5TB80 1403 aa14.5□□□□□ -0.09
SS18-220ENST00000582092 PRXQ9BXM0 1461 aa14.5□□□□□ -0.09
SS18-220ENST00000582092 UGGT2Q9NYU1 1516 aa14.48□□□□□ -0.09
SS18-220ENST00000582092 TTBK1Q5TCY1 1321 aaPredicted RBP14.47□□□□□ -0.09
SS18-220ENST00000582092 TRIM26Q12899 539 aaPredicted RBP14.47□□□□□ -0.09
SS18-220ENST00000582092 PCGF6Q9BYE7 350 aa14.47□□□□□ -0.09
SS18-220ENST00000582092 ADCY10Q96PN6 1610 aa14.45□□□□□ -0.1
SS18-220ENST00000582092 RANGAP1P46060 587 aaPredicted RBP14.45□□□□□ -0.1
SS18-220ENST00000582092 KIAA0556O60303 1618 aa14.44□□□□□ -0.1
SS18-220ENST00000582092 DISP1Q96F81 1524 aa14.43□□□□□ -0.1
SS18-220ENST00000582092 MAPKBP1O60336 1514 aa14.42□□□□□ -0.1
SS18-220ENST00000582092 APLP2Q06481 763 aa14.42□□□□□ -0.1
SS18-220ENST00000582092 CLIP1P30622 1438 aa14.41□□□□□ -0.1
SS18-220ENST00000582092 KIF13AQ9H1H9 1805 aa14.41□□□□□ -0.1
SS18-220ENST00000582092 UACAQ9BZF9 1416 aa14.4□□□□□ -0.1
SS18-220ENST00000582092 UHRF1BP1LA0JNW5 1464 aa14.39□□□□□ -0.11
SS18-220ENST00000582092 ABCC2Q92887 1545 aa14.38□□□□□ -0.11
SS18-220ENST00000582092 ABCC10Q5T3U5 1492 aa14.37□□□□□ -0.11
SS18-220ENST00000582092 FAM69CQ0P6D2 419 aa14.36□□□□□ -0.11
SS18-220ENST00000582092 PPARGC1BQ86YN6 1023 aaKnown RBP14.34□□□□□ -0.11
SS18-220ENST00000582092 PLB1Q6P1J6 1458 aa14.33□□□□□ -0.12
SS18-220ENST00000582092 DIP2BQ9P265 1576 aa14.33□□□□□ -0.12
SS18-220ENST00000582092 KDM5BQ9UGL1 1544 aa14.31□□□□□ -0.12
SS18-220ENST00000582092 TSPOAP1O95153 1857 aa14.3□□□□□ -0.12
SS18-220ENST00000582092 ZCCHC11Q5TAX3 1644 aaKnown RBP14.3□□□□□ -0.12
SS18-220ENST00000582092 ASXL2Q76L83 1435 aa14.29□□□□□ -0.12
SS18-220ENST00000582092 SAMD9Q5K651 1589 aa14.28□□□□□ -0.12
SS18-220ENST00000582092 P3H3Q8IVL6 736 aa14.28□□□□□ -0.12
SS18-220ENST00000582092 ABCA8O94911 1581 aa14.26□□□□□ -0.13
SS18-220ENST00000582092 VPS8Q8N3P4 1428 aa14.25□□□□□ -0.13
SS18-220ENST00000582092 GLI2P10070 1586 aa14.25□□□□□ -0.13
SS18-220ENST00000582092 EFCAB5A4FU69 1503 aa14.25□□□□□ -0.13
SS18-220ENST00000582092 RAPGEF6Q8TEU7 1601 aa14.22□□□□□ -0.13
SS18-220ENST00000582092 WDR7Q9Y4E6 1490 aa14.21□□□□□ -0.13
SS18-220ENST00000582092 EPRSP07814 1512 aaKnown RBP14.2□□□□□ -0.14
SS18-220ENST00000582092 KDM6BO15054 1643 aa14.19□□□□□ -0.14
SS18-220ENST00000582092 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.19□□□□□ -0.14
SS18-220ENST00000582092 HNRNPUL2Q1KMD3 747 aaKnown RBP14.19□□□□□ -0.14
SS18-220ENST00000582092 TEX14Q8IWB6 1497 aa14.18□□□□□ -0.14
SS18-220ENST00000582092 FHOD3Q2V2M9 1422 aa14.17□□□□□ -0.14
SS18-220ENST00000582092 MAP3K4Q9Y6R4 1608 aa14.17□□□□□ -0.14
SS18-220ENST00000582092 KCNH8Q96L42 1107 aa14.17□□□□□ -0.14
SS18-220ENST00000582092 CFAP43Q8NDM7 1665 aa14.17□□□□□ -0.14
SS18-220ENST00000582092 ATP10BO94823 1461 aa14.15□□□□□ -0.14
SS18-220ENST00000582092 ATP1B4Q9UN42 357 aaPredicted RBP14.15□□□□□ -0.14
SS18-220ENST00000582092 ARHGAP35Q9NRY4 1499 aa14.14□□□□□ -0.15
SS18-220ENST00000582092 ARID3CA6NKF2 412 aa14.14□□□□□ -0.15
SS18-220ENST00000582092 FMN1Q68DA7 1419 aa14.14□□□□□ -0.15
SS18-220ENST00000582092 PPRC1Q5VV67 1664 aaKnown RBP14.13□□□□□ -0.15
SS18-220ENST00000582092 CD109Q6YHK3 1445 aa14.12□□□□□ -0.15
SS18-220ENST00000582092 PLEKHD1A6NEE1 506 aa14.11□□□□□ -0.15
SS18-220ENST00000582092 NUP153P49790 1475 aaKnown RBP14.1□□□□□ -0.15
SS18-220ENST00000582092 HRCP23327 699 aa14.08□□□□□ -0.16
SS18-220ENST00000582092 AEBP2Q6ZN18 517 aaPredicted RBP14.08□□□□□ -0.16
SS18-220ENST00000582092 MAGI3Q5TCQ9 1506 aa14.08□□□□□ -0.16
SS18-220ENST00000582092 HECW1Q76N89 1606 aa14.08□□□□□ -0.16
SS18-220ENST00000582092 CDK11AQ9UQ88 783 aaPredicted RBP14.07□□□□□ -0.16
SS18-220ENST00000582092 ABCA9Q8IUA7 1624 aa14.06□□□□□ -0.16
SS18-220ENST00000582092 ZEB1P37275 1124 aaPredicted RBP14.04□□□□□ -0.16
SS18-220ENST00000582092 PHLDB1Q86UU1 1377 aa14.04□□□□□ -0.16
SS18-220ENST00000582092 CFAP74Q9C0B2 1584 aa13.98□□□□□ -0.17
SS18-220ENST00000582092 KANK4Q5T7N3 995 aaPredicted RBP13.98□□□□□ -0.17
SS18-220ENST00000582092 CDK13Q14004 1512 aaKnown RBP13.98□□□□□ -0.17
SS18-220ENST00000582092 NEO1Q92859 1461 aa13.98□□□□□ -0.17
SS18-220ENST00000582092 CCDC18Q5T9S5 1454 aa13.97□□□□□ -0.17
SS18-220ENST00000582092 CASKIN1Q8WXD9 1431 aa13.97□□□□□ -0.17
SS18-220ENST00000582092 MAP3K1Q13233 1512 aa13.96□□□□□ -0.17
SS18-220ENST00000582092 ARAP3Q8WWN8 1544 aa13.96□□□□□ -0.17
SS18-220ENST00000582092 FYCO1Q9BQS8 1478 aa13.96□□□□□ -0.17
SS18-220ENST00000582092 COL17A1Q9UMD9 1497 aaPredicted RBP13.95□□□□□ -0.18
SS18-220ENST00000582092 CCER1Q8TC90 406 aaPredicted RBP13.95□□□□□ -0.18
SS18-220ENST00000582092 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.95□□□□□ -0.18
SS18-220ENST00000582092 KIF14Q15058 1648 aa13.93□□□□□ -0.18
SS18-220ENST00000582092 MYO5CQ9NQX4 1742 aa13.93□□□□□ -0.18
SS18-220ENST00000582092 PCF11O94913 1555 aaKnown RBP13.93□□□□□ -0.18
SS18-220ENST00000582092 TIAM1Q13009 1591 aa13.92□□□□□ -0.18
SS18-220ENST00000582092 LRRIQ1Q96JM4 1722 aa13.92□□□□□ -0.18
SS18-220ENST00000582092 FANCAO15360 1455 aa13.92□□□□□ -0.18
SS18-220ENST00000582092 TROQ12816 1431 aaPredicted RBP13.91□□□□□ -0.18
SS18-220ENST00000582092 TTC37Q6PGP7 1564 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms