RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 NISCHQ9Y2I1 1504 aa21.13■□□□□ 0.97
SS18-220ENST00000582092 CCDC180Q9P1Z9 1646 aa18.92■□□□□ 0.62
SS18-220ENST00000582092 ABCC9O60706 1549 aa18.55■□□□□ 0.56
SS18-220ENST00000582092 RB1CC1Q8TDY2 1594 aa17.87■□□□□ 0.45
SS18-220ENST00000582092 NACADO15069 1562 aa17.81■□□□□ 0.44
SS18-220ENST00000582092 DCAF8L2P0C7V8 631 aa17.78■□□□□ 0.44
SS18-220ENST00000582092 MYO15BQ96JP2 1530 aa17.64■□□□□ 0.41
SS18-220ENST00000582092 ZCCHC6Q5VYS8 1495 aaKnown RBP17.56■□□□□ 0.4
SS18-220ENST00000582092 DCAF1Q9Y4B6 1507 aa17.5■□□□□ 0.39
SS18-220ENST00000582092 UNC13AQ9UPW8 1703 aa17.44■□□□□ 0.38
SS18-220ENST00000582092 PABPN1Q86U42 306 aaKnown RBP eCLIP17.3■□□□□ 0.36
SS18-220ENST00000582092 BICRAQ9NZM4 1560 aa17.22■□□□□ 0.35
SS18-220ENST00000582092 SCRIBQ14160 1630 aa17.18■□□□□ 0.34
SS18-220ENST00000582092 SHROOM4Q9ULL8 1493 aa17.14■□□□□ 0.33
SS18-220ENST00000582092 DNAJC5BQ9UF47 199 aa17.05■□□□□ 0.32
SS18-220ENST00000582092 EIF4G1Q04637 1599 aaKnown RBP16.83■□□□□ 0.28
SS18-220ENST00000582092 CC2D2AQ9P2K1 1620 aa16.81■□□□□ 0.28
SS18-220ENST00000582092 CECR2Q9BXF3 1484 aa16.71■□□□□ 0.27
SS18-220ENST00000582092 SMARCA4P51532 1647 aa16.44■□□□□ 0.22
SS18-220ENST00000582092 BAZ1AQ9NRL2 1556 aaPredicted RBP16.43■□□□□ 0.22
SS18-220ENST00000582092 SMARCA2P51531 1590 aa16.41■□□□□ 0.22
SS18-220ENST00000582092 NCAPD3P42695 1498 aa16.38■□□□□ 0.21
SS18-220ENST00000582092 ATAD2BQ9ULI0 1458 aa16.36■□□□□ 0.21
SS18-220ENST00000582092 HMGXB3Q12766 1538 aa16.32■□□□□ 0.2
SS18-220ENST00000582092 SUPT5HO00267 1087 aaKnown RBP16.3■□□□□ 0.2
SS18-220ENST00000582092 PEG3Q9GZU2 1588 aa16.27■□□□□ 0.2
SS18-220ENST00000582092 BAZ1BQ9UIG0 1483 aaKnown RBP16.27■□□□□ 0.19
SS18-220ENST00000582092 MROH2BQ7Z745 1585 aa16.25■□□□□ 0.19
SS18-220ENST00000582092 WIZO95785 1651 aa16.1■□□□□ 0.17
SS18-220ENST00000582092 ERCC6Q03468 1493 aa16.08■□□□□ 0.16
SS18-220ENST00000582092 LAMC3Q9Y6N6 1575 aa16.03■□□□□ 0.16
SS18-220ENST00000582092 RSF1Q96T23 1441 aaPredicted RBP16.02■□□□□ 0.15
SS18-220ENST00000582092 NESP48681 1621 aa15.98■□□□□ 0.15
SS18-220ENST00000582092 CUX2O14529 1486 aa15.94■□□□□ 0.14
SS18-220ENST00000582092 TOP2AP11388 1531 aaKnown RBP15.94■□□□□ 0.14
SS18-220ENST00000582092 PDS5BQ9NTI5 1447 aa15.94■□□□□ 0.14
SS18-220ENST00000582092 CADPSQ9ULU8 1353 aa15.91■□□□□ 0.14
SS18-220ENST00000582092 KIF21AQ7Z4S6 1674 aa15.86■□□□□ 0.13
SS18-220ENST00000582092 THOC2Q8NI27 1593 aaKnown RBP15.8■□□□□ 0.12
SS18-220ENST00000582092 CFTRP13569 1480 aa15.78■□□□□ 0.12
SS18-220ENST00000582092 PRDM2Q13029 1718 aa15.76■□□□□ 0.11
SS18-220ENST00000582092 CEP164Q9UPV0 1460 aa15.75■□□□□ 0.11
SS18-220ENST00000582092 FANCD2Q9BXW9 1451 aa15.73■□□□□ 0.11
SS18-220ENST00000582092 MRC2Q9UBG0 1479 aa15.73■□□□□ 0.11
SS18-220ENST00000582092 CCDC88BA6NC98 1476 aa15.72■□□□□ 0.11
SS18-220ENST00000582092 WDR62O43379 1518 aa15.67■□□□□ 0.1
SS18-220ENST00000582092 DNAJC5Q9H3Z4 198 aa15.56■□□□□ 0.08
SS18-220ENST00000582092 CHIC1Q5VXU3 224 aa15.55■□□□□ 0.08
SS18-220ENST00000582092 ABCC8Q09428 1581 aa15.54■□□□□ 0.08
SS18-220ENST00000582092 URB2Q14146 1524 aaKnown RBP15.53■□□□□ 0.08
SS18-220ENST00000582092 TOPBP1Q92547 1522 aa15.46■□□□□ 0.07
SS18-220ENST00000582092 DNMBPQ6XZF7 1577 aa15.45■□□□□ 0.06
SS18-220ENST00000582092 IFT140Q96RY7 1462 aa15.42■□□□□ 0.06
SS18-220ENST00000582092 TRIM41Q8WV44 630 aa15.34■□□□□ 0.05
SS18-220ENST00000582092 POLA1P09884 1462 aaPredicted RBP15.3■□□□□ 0.04
SS18-220ENST00000582092 TARBP1Q13395 1621 aaKnown RBP15.28■□□□□ 0.04
SS18-220ENST00000582092 ZNF608Q9ULD9 1512 aaPredicted RBP15.28■□□□□ 0.04
SS18-220ENST00000582092 OSCARQ8IYS5 282 aa15.28■□□□□ 0.04
SS18-220ENST00000582092 SOGA1O94964 1423 aa15.27■□□□□ 0.04
SS18-220ENST00000582092 EIF4G3O43432 1585 aaKnown RBP15.27■□□□□ 0.03
SS18-220ENST00000582092 CUX1P39880 1505 aa15.26■□□□□ 0.03
SS18-220ENST00000582092 FGD5Q6ZNL6 1462 aa15.26■□□□□ 0.03
SS18-220ENST00000582092 WDR97A6NE52 1622 aa15.25■□□□□ 0.03
SS18-220ENST00000582092 RAD54L2Q9Y4B4 1467 aa15.21■□□□□ 0.03
SS18-220ENST00000582092 AQRO60306 1485 aaKnown RBP eCLIP15.2■□□□□ 0.02
SS18-220ENST00000582092 WRNQ14191 1432 aaPredicted RBP eCLIP15.17■□□□□ 0.02
SS18-220ENST00000582092 TDRD9Q8NDG6 1382 aaKnown RBP15.16■□□□□ 0.02
SS18-220ENST00000582092 BIVM-ERCC5R4GMW8 1640 aa15.15■□□□□ 0.02
SS18-220ENST00000582092 TOP2BQ02880 1626 aa15.14■□□□□ 0.01
SS18-220ENST00000582092 FBLN2P98095 1184 aa15.14■□□□□ 0.01
SS18-220ENST00000582092 CHD1O14646 1710 aa15.14■□□□□ 0.01
SS18-220ENST00000582092 GRIN2BQ13224 1484 aa15.12■□□□□ 0.01
SS18-220ENST00000582092 ABCA10Q8WWZ4 1543 aa15.11■□□□□ 0.01
SS18-220ENST00000582092 PBRM1Q86U86 1689 aa15.1■□□□□ 0.01
SS18-220ENST00000582092 GAPVD1Q14C86 1478 aa15.1■□□□□ 0.01
SS18-220ENST00000582092 MAGI1Q96QZ7 1491 aaPredicted RBP15.1■□□□□ 0.01
SS18-220ENST00000582092 SYNJ1O43426 1573 aa15.08■□□□□ 0
SS18-220ENST00000582092 CHMP7Q8WUX9 453 aaPredicted RBP15.08■□□□□ 0
SS18-220ENST00000582092 SNAPC4Q5SXM2 1469 aa15.08■□□□□ 0
SS18-220ENST00000582092 FAM9AQ8IZU1 332 aaPredicted RBP15.06■□□□□ 0
SS18-220ENST00000582092 ABCA5Q8WWZ7 1642 aa15.05■□□□□ -0
SS18-220ENST00000582092 SYNJ2O15056 1496 aa15.02■□□□□ -0
SS18-220ENST00000582092 RIMBP3CA6NJZ7 1639 aa14.99□□□□□ -0.01
SS18-220ENST00000582092 RIMBP3BA6NNM3 1639 aa14.99□□□□□ -0.01
SS18-220ENST00000582092 RIMBP3Q9UFD9 1639 aa14.99□□□□□ -0.01
SS18-220ENST00000582092 LOC105371045A0A1W2PR82 267 aa14.98□□□□□ -0.01
SS18-220ENST00000582092 ARHGEF11O15085 1522 aa14.97□□□□□ -0.01
SS18-220ENST00000582092 ERICH3Q5RHP9 1530 aa14.96□□□□□ -0.02
SS18-220ENST00000582092 FHAD1B1AJZ9 1412 aa14.92□□□□□ -0.02
SS18-220ENST00000582092 ADAMTS12P58397 1594 aa14.92□□□□□ -0.02
SS18-220ENST00000582092 CLASP1Q7Z460 1538 aa14.92□□□□□ -0.02
SS18-220ENST00000582092 GRIN2AQ12879 1464 aa14.9□□□□□ -0.02
SS18-220ENST00000582092 KIF27Q86VH2 1401 aa14.89□□□□□ -0.03
SS18-220ENST00000582092 CYB5RLQ6IPT4 315 aa14.87□□□□□ -0.03
SS18-220ENST00000582092 EHMT2Q96KQ7 1210 aa14.87□□□□□ -0.03
SS18-220ENST00000582092 EEA1Q15075 1411 aa14.85□□□□□ -0.03
SS18-220ENST00000582092 CUL7Q14999 1698 aa14.84□□□□□ -0.03
SS18-220ENST00000582092 NUP160Q12769 1436 aa14.82□□□□□ -0.04
SS18-220ENST00000582092 ARAP1Q96P48 1450 aa14.81□□□□□ -0.04
SS18-220ENST00000582092 CSRNP3Q8WYN3 585 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms