RNA–Protein interactions for RNA: ENST00000570300.1

NPLOC4-203, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 4

Gene NPLOC4, Length 565 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-203ENST00000570300 CLIP1P30622 1438 aa17.52■□□□□ 0.4
NPLOC4-203ENST00000570300 SNAPC4Q5SXM2 1469 aa17.47■□□□□ 0.39
NPLOC4-203ENST00000570300 CTTNBP2Q8WZ74 1663 aa17.46■□□□□ 0.39
NPLOC4-203ENST00000570300 SYNJ2O15056 1496 aa17.44■□□□□ 0.38
NPLOC4-203ENST00000570300 GRIN2AQ12879 1464 aa17.42■□□□□ 0.38
NPLOC4-203ENST00000570300 EFCAB5A4FU69 1503 aa17.4■□□□□ 0.38
NPLOC4-203ENST00000570300 ARHGAP35Q9NRY4 1499 aa17.39■□□□□ 0.37
NPLOC4-203ENST00000570300 VPS8Q8N3P4 1428 aa17.38■□□□□ 0.37
NPLOC4-203ENST00000570300 ARAP1Q96P48 1450 aa17.36■□□□□ 0.37
NPLOC4-203ENST00000570300 KIAA0586Q9BVV6 1533 aa17.35■□□□□ 0.37
NPLOC4-203ENST00000570300 NUP160Q12769 1436 aa17.34■□□□□ 0.37
NPLOC4-203ENST00000570300 IQGAP2Q13576 1575 aa17.33■□□□□ 0.37
NPLOC4-203ENST00000570300 SAMD9Q5K651 1589 aa17.32■□□□□ 0.36
NPLOC4-203ENST00000570300 CHMP7Q8WUX9 453 aaPredicted RBP17.32■□□□□ 0.36
NPLOC4-203ENST00000570300 UGGT2Q9NYU1 1516 aa17.3■□□□□ 0.36
NPLOC4-203ENST00000570300 CEP170Q5SW79 1584 aa17.28■□□□□ 0.36
NPLOC4-203ENST00000570300 RANGAP1P46060 587 aaPredicted RBP17.22■□□□□ 0.35
NPLOC4-203ENST00000570300 CHD1O14646 1710 aa17.21■□□□□ 0.35
NPLOC4-203ENST00000570300 MAP3K1Q13233 1512 aa17.21■□□□□ 0.34
NPLOC4-203ENST00000570300 FMN1Q68DA7 1419 aa17.21■□□□□ 0.34
NPLOC4-203ENST00000570300 FBLN2P98095 1184 aa17.18■□□□□ 0.34
NPLOC4-203ENST00000570300 PPP6R1Q9UPN7 881 aa17.18■□□□□ 0.34
NPLOC4-203ENST00000570300 FHOD3Q2V2M9 1422 aa17.18■□□□□ 0.34
NPLOC4-203ENST00000570300 DISP1Q96F81 1524 aa17.17■□□□□ 0.34
NPLOC4-203ENST00000570300 CASKIN1Q8WXD9 1431 aa17.16■□□□□ 0.34
NPLOC4-203ENST00000570300 FYCO1Q9BQS8 1478 aa17.16■□□□□ 0.34
NPLOC4-203ENST00000570300 KIAA0556O60303 1618 aa17.15■□□□□ 0.34
NPLOC4-203ENST00000570300 ADRA2BP18089 450 aa17.14■□□□□ 0.33
NPLOC4-203ENST00000570300 JPH4Q96JJ6 628 aa17.13■□□□□ 0.33
NPLOC4-203ENST00000570300 SHROOM2Q13796 1616 aa17.12■□□□□ 0.33
NPLOC4-203ENST00000570300 APLP2Q06481 763 aa17.12■□□□□ 0.33
NPLOC4-203ENST00000570300 TRIM26Q12899 539 aaPredicted RBP17.12■□□□□ 0.33
NPLOC4-203ENST00000570300 CARMIL2Q6F5E8 1435 aa17.12■□□□□ 0.33
NPLOC4-203ENST00000570300 CLASP1Q7Z460 1538 aa17.11■□□□□ 0.33
NPLOC4-203ENST00000570300 PCF11O94913 1555 aaKnown RBP17.11■□□□□ 0.33
NPLOC4-203ENST00000570300 P3H3Q8IVL6 736 aa17.09■□□□□ 0.33
NPLOC4-203ENST00000570300 TIAM1Q13009 1591 aa17.07■□□□□ 0.32
NPLOC4-203ENST00000570300 CFAP43Q8NDM7 1665 aa17.05■□□□□ 0.32
NPLOC4-203ENST00000570300 PRG4Q92954 1404 aaPredicted RBP17.02■□□□□ 0.31
NPLOC4-203ENST00000570300 CCDC18Q5T9S5 1454 aa17.01■□□□□ 0.31
NPLOC4-203ENST00000570300 HECW1Q76N89 1606 aa17.01■□□□□ 0.31
NPLOC4-203ENST00000570300 LRRC9Q6ZRR7 1453 aa16.99■□□□□ 0.31
NPLOC4-203ENST00000570300 RAPGEF6Q8TEU7 1601 aa16.96■□□□□ 0.31
NPLOC4-203ENST00000570300 KANK4Q5T7N3 995 aaPredicted RBP16.96■□□□□ 0.31
NPLOC4-203ENST00000570300 LRRIQ1Q96JM4 1722 aa16.96■□□□□ 0.3
NPLOC4-203ENST00000570300 PPARGC1BQ86YN6 1023 aaKnown RBP16.95■□□□□ 0.3
NPLOC4-203ENST00000570300 PCGF6Q9BYE7 350 aa16.95■□□□□ 0.3
NPLOC4-203ENST00000570300 EPRSP07814 1512 aaKnown RBP16.95■□□□□ 0.3
NPLOC4-203ENST00000570300 ABCA8O94911 1581 aa16.94■□□□□ 0.3
NPLOC4-203ENST00000570300 OSCARQ8IYS5 282 aa16.93■□□□□ 0.3
NPLOC4-203ENST00000570300 NUP153P49790 1475 aaKnown RBP16.93■□□□□ 0.3
NPLOC4-203ENST00000570300 PTPRGP23470 1445 aa16.92■□□□□ 0.3
NPLOC4-203ENST00000570300 PLB1Q6P1J6 1458 aa16.89■□□□□ 0.29
NPLOC4-203ENST00000570300 EHBP1L1Q8N3D4 1523 aa16.89■□□□□ 0.29
NPLOC4-203ENST00000570300 PIAS4Q8N2W9 510 aaPredicted RBP16.88■□□□□ 0.29
NPLOC4-203ENST00000570300 RRBP1Q9P2E9 1410 aaKnown RBP16.87■□□□□ 0.29
NPLOC4-203ENST00000570300 ERCC6L2Q5T890 1561 aa16.87■□□□□ 0.29
NPLOC4-203ENST00000570300 ATP1B4Q9UN42 357 aaPredicted RBP16.87■□□□□ 0.29
NPLOC4-203ENST00000570300 MTUS2Q5JR59 1369 aa16.86■□□□□ 0.29
NPLOC4-203ENST00000570300 UACAQ9BZF9 1416 aa16.85■□□□□ 0.29
NPLOC4-203ENST00000570300 UHRF1BP1LA0JNW5 1464 aa16.84■□□□□ 0.29
NPLOC4-203ENST00000570300 ARHGEF11O15085 1522 aa16.84■□□□□ 0.29
NPLOC4-203ENST00000570300 CDK13Q14004 1512 aaKnown RBP16.83■□□□□ 0.28
NPLOC4-203ENST00000570300 MAGI3Q5TCQ9 1506 aa16.82■□□□□ 0.28
NPLOC4-203ENST00000570300 CDK11AQ9UQ88 783 aaPredicted RBP16.82■□□□□ 0.28
NPLOC4-203ENST00000570300 SUPT6HQ7KZ85 1726 aaKnown RBP16.82■□□□□ 0.28
NPLOC4-203ENST00000570300 ABCC2Q92887 1545 aa16.81■□□□□ 0.28
NPLOC4-203ENST00000570300 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.8■□□□□ 0.28
NPLOC4-203ENST00000570300 TTBK1Q5TCY1 1321 aaPredicted RBP16.8■□□□□ 0.28
NPLOC4-203ENST00000570300 ATP10BO94823 1461 aa16.8■□□□□ 0.28
NPLOC4-203ENST00000570300 PHLDB1Q86UU1 1377 aa16.79■□□□□ 0.28
NPLOC4-203ENST00000570300 NCOA2Q15596 1464 aa16.79■□□□□ 0.28
NPLOC4-203ENST00000570300 TROQ12816 1431 aaPredicted RBP16.78■□□□□ 0.28
NPLOC4-203ENST00000570300 CCNB3Q8WWL7 1395 aa16.77■□□□□ 0.28
NPLOC4-203ENST00000570300 ADCY10Q96PN6 1610 aa16.75■□□□□ 0.27
NPLOC4-203ENST00000570300 MYOM3Q5VTT5 1437 aa16.74■□□□□ 0.27
NPLOC4-203ENST00000570300 KDM5BQ9UGL1 1544 aa16.74■□□□□ 0.27
NPLOC4-203ENST00000570300 FGD6Q6ZV73 1430 aa16.71■□□□□ 0.27
NPLOC4-203ENST00000570300 MIA2Q96PC5 1412 aa16.7■□□□□ 0.26
NPLOC4-203ENST00000570300 PLEKHD1A6NEE1 506 aa16.7■□□□□ 0.26
NPLOC4-203ENST00000570300 TCOF1Q13428 1488 aaKnown RBP16.67■□□□□ 0.26
NPLOC4-203ENST00000570300 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.66■□□□□ 0.26
NPLOC4-203ENST00000570300 HNRNPUL2Q1KMD3 747 aaKnown RBP16.66■□□□□ 0.26
NPLOC4-203ENST00000570300 KIF14Q15058 1648 aa16.65■□□□□ 0.26
NPLOC4-203ENST00000570300 ZCCHC11Q5TAX3 1644 aaKnown RBP16.65■□□□□ 0.26
NPLOC4-203ENST00000570300 ABCC10Q5T3U5 1492 aa16.65■□□□□ 0.26
NPLOC4-203ENST00000570300 ARID3CA6NKF2 412 aa16.64■□□□□ 0.25
NPLOC4-203ENST00000570300 ITSN2Q9NZM3 1697 aa16.62■□□□□ 0.25
NPLOC4-203ENST00000570300 MSH5O43196 834 aa16.62■□□□□ 0.25
NPLOC4-203ENST00000570300 PTPN23Q9H3S7 1636 aa16.62■□□□□ 0.25
NPLOC4-203ENST00000570300 GPATCH8Q9UKJ3 1502 aaKnown RBP16.61■□□□□ 0.25
NPLOC4-203ENST00000570300 CDC42BPAQ5VT25 1732 aa16.56■□□□□ 0.24
NPLOC4-203ENST00000570300 FAM50AQ14320 339 aaKnown RBP16.55■□□□□ 0.24
NPLOC4-203ENST00000570300 RIMBP3CA6NJZ7 1639 aa16.55■□□□□ 0.24
NPLOC4-203ENST00000570300 RIMBP3BA6NNM3 1639 aa16.55■□□□□ 0.24
NPLOC4-203ENST00000570300 RIMBP3Q9UFD9 1639 aa16.55■□□□□ 0.24
NPLOC4-203ENST00000570300 WDR7Q9Y4E6 1490 aa16.54■□□□□ 0.24
NPLOC4-203ENST00000570300 HRCP23327 699 aa16.53■□□□□ 0.24
NPLOC4-203ENST00000570300 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.53■□□□□ 0.245e-8■■■■■ 28.6
NPLOC4-203ENST00000570300 PREX2Q70Z35 1606 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms