RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 P3H3Q8IVL6 736 aa29.11■■■□□ 2.25
SMPD3-203ENST00000563226 CCER1Q8TC90 406 aaPredicted RBP29.11■■■□□ 2.25
SMPD3-203ENST00000563226 EFCAB5A4FU69 1503 aa29.1■■■□□ 2.25
SMPD3-203ENST00000563226 FHOD3Q2V2M9 1422 aa29.09■■■□□ 2.25
SMPD3-203ENST00000563226 ERCC6Q03468 1493 aa29.07■■■□□ 2.24
SMPD3-203ENST00000563226 PCF11O94913 1555 aaKnown RBP29.06■■■□□ 2.24
SMPD3-203ENST00000563226 HNRNPUL2Q1KMD3 747 aaKnown RBP29.06■■■□□ 2.24
SMPD3-203ENST00000563226 IFT140Q96RY7 1462 aa29.05■■■□□ 2.24
SMPD3-203ENST00000563226 TIAM1Q13009 1591 aa29.05■■■□□ 2.24
SMPD3-203ENST00000563226 ZNF608Q9ULD9 1512 aaPredicted RBP29.05■■■□□ 2.24
SMPD3-203ENST00000563226 THOC2Q8NI27 1593 aaKnown RBP29.03■■■□□ 2.24
SMPD3-203ENST00000563226 FHAD1B1AJZ9 1412 aa29.03■■■□□ 2.24
SMPD3-203ENST00000563226 ADAMTS12P58397 1594 aa29.02■■■□□ 2.24
SMPD3-203ENST00000563226 MAP3K1Q13233 1512 aa29■■■□□ 2.23
SMPD3-203ENST00000563226 GRIN2BQ13224 1484 aa28.98■■■□□ 2.23
SMPD3-203ENST00000563226 SAMD9Q5K651 1589 aa28.97■■■□□ 2.23
SMPD3-203ENST00000563226 CFAP43Q8NDM7 1665 aa28.96■■■□□ 2.23
SMPD3-203ENST00000563226 RRBP1Q9P2E9 1410 aaKnown RBP28.92■■■□□ 2.22
SMPD3-203ENST00000563226 EIF4G3O43432 1585 aaKnown RBP28.91■■■□□ 2.22
SMPD3-203ENST00000563226 FYCO1Q9BQS8 1478 aa28.9■■■□□ 2.22
SMPD3-203ENST00000563226 LRRC9Q6ZRR7 1453 aa28.9■■■□□ 2.22
SMPD3-203ENST00000563226 CASKIN1Q8WXD9 1431 aa28.88■■■□□ 2.21
SMPD3-203ENST00000563226 ATP1B4Q9UN42 357 aaPredicted RBP28.84■■■□□ 2.21
SMPD3-203ENST00000563226 FMN1Q68DA7 1419 aa28.84■■■□□ 2.21
SMPD3-203ENST00000563226 SNAPC4Q5SXM2 1469 aa28.84■■■□□ 2.21
SMPD3-203ENST00000563226 IQGAP2Q13576 1575 aa28.81■■■□□ 2.2
SMPD3-203ENST00000563226 CCNB3Q8WWL7 1395 aa28.8■■■□□ 2.2
SMPD3-203ENST00000563226 LRRIQ1Q96JM4 1722 aa28.77■■■□□ 2.2
SMPD3-203ENST00000563226 PHLDB1Q86UU1 1377 aa28.73■■■□□ 2.19
SMPD3-203ENST00000563226 GRIN2AQ12879 1464 aa28.69■■■□□ 2.18
SMPD3-203ENST00000563226 UGGT2Q9NYU1 1516 aa28.65■■■□□ 2.18
SMPD3-203ENST00000563226 MAGI1Q96QZ7 1491 aaPredicted RBP28.64■■■□□ 2.18
SMPD3-203ENST00000563226 KIAA0586Q9BVV6 1533 aa28.61■■■□□ 2.17
SMPD3-203ENST00000563226 ITGAEP38570 1179 aa28.6■■■□□ 2.17
SMPD3-203ENST00000563226 SYNJ2O15056 1496 aa28.57■■■□□ 2.16
SMPD3-203ENST00000563226 CEP170Q5SW79 1584 aa28.55■■■□□ 2.16
SMPD3-203ENST00000563226 MTUS2Q5JR59 1369 aa28.53■■■□□ 2.16
SMPD3-203ENST00000563226 DISP1Q96F81 1524 aa28.53■■■□□ 2.16
SMPD3-203ENST00000563226 KIAA0556O60303 1618 aa28.53■■■□□ 2.16
SMPD3-203ENST00000563226 HECW1Q76N89 1606 aa28.52■■■□□ 2.16
SMPD3-203ENST00000563226 DHX57Q6P158 1386 aaKnown RBP28.51■■■□□ 2.15
SMPD3-203ENST00000563226 CHMP7Q8WUX9 453 aaPredicted RBP28.51■■■□□ 2.15
SMPD3-203ENST00000563226 FAM50AQ14320 339 aaKnown RBP28.49■■■□□ 2.15
SMPD3-203ENST00000563226 MAGI3Q5TCQ9 1506 aa28.49■■■□□ 2.15
SMPD3-203ENST00000563226 CCDC18Q5T9S5 1454 aa28.47■■■□□ 2.15
SMPD3-203ENST00000563226 EHBP1L1Q8N3D4 1523 aa28.47■■■□□ 2.15
SMPD3-203ENST00000563226 FBLN2P98095 1184 aa28.46■■■□□ 2.15
SMPD3-203ENST00000563226 SUPT6HQ7KZ85 1726 aaKnown RBP28.44■■■□□ 2.14
SMPD3-203ENST00000563226 NCOA2Q15596 1464 aa28.44■■■□□ 2.14
SMPD3-203ENST00000563226 EPRSP07814 1512 aaKnown RBP28.43■■■□□ 2.14
SMPD3-203ENST00000563226 FGD6Q6ZV73 1430 aa28.43■■■□□ 2.14
SMPD3-203ENST00000563226 CDK13Q14004 1512 aaKnown RBP28.42■■■□□ 2.14
SMPD3-203ENST00000563226 NUP160Q12769 1436 aa28.41■■■□□ 2.14
SMPD3-203ENST00000563226 RAB3GAP2Q9H2M9 1393 aa28.39■■■□□ 2.14
SMPD3-203ENST00000563226 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.37■■■□□ 2.13
SMPD3-203ENST00000563226 ARHGEF11O15085 1522 aa28.36■■■□□ 2.13
SMPD3-203ENST00000563226 ARID3CA6NKF2 412 aa28.34■■■□□ 2.13
SMPD3-203ENST00000563226 MYOM3Q5VTT5 1437 aa28.34■■■□□ 2.13
SMPD3-203ENST00000563226 SETD5Q9C0A6 1442 aa28.33■■■□□ 2.13
SMPD3-203ENST00000563226 CLSPNQ9HAW4 1339 aa28.33■■■□□ 2.13
SMPD3-203ENST00000563226 RAPGEF6Q8TEU7 1601 aa28.32■■■□□ 2.12
SMPD3-203ENST00000563226 NUP153P49790 1475 aaKnown RBP28.29■■■□□ 2.12
SMPD3-203ENST00000563226 JPH4Q96JJ6 628 aa28.25■■■□□ 2.11
SMPD3-203ENST00000563226 PTPN23Q9H3S7 1636 aa28.25■■■□□ 2.11
SMPD3-203ENST00000563226 PTPRKQ15262 1439 aa28.23■■■□□ 2.11
SMPD3-203ENST00000563226 CHD1O14646 1710 aa28.21■■■□□ 2.11
SMPD3-203ENST00000563226 PLB1Q6P1J6 1458 aa28.2■■■□□ 2.11
SMPD3-203ENST00000563226 MAPKBP1O60336 1514 aa28.2■■■□□ 2.1
SMPD3-203ENST00000563226 CARMIL2Q6F5E8 1435 aa28.2■■■□□ 2.1
SMPD3-203ENST00000563226 TCOF1Q13428 1488 aaKnown RBP28.15■■■□□ 2.1
SMPD3-203ENST00000563226 ZNF316A6NFI3 1004 aaPredicted RBP28.13■■■□□ 2.09
SMPD3-203ENST00000563226 HFM1A2PYH4 1435 aa28.08■■■□□ 2.09
SMPD3-203ENST00000563226 DIEXFQ68CQ4 756 aaKnown RBP28.06■■■□□ 2.08
SMPD3-203ENST00000563226 MIA2Q96PC5 1412 aa28.06■■■□□ 2.08
SMPD3-203ENST00000563226 ABCA8O94911 1581 aa28.05■■■□□ 2.08
SMPD3-203ENST00000563226 PRG4Q92954 1404 aaPredicted RBP28.04■■■□□ 2.08
SMPD3-203ENST00000563226 NAIPQ13075 1403 aa28.03■■■□□ 2.08
SMPD3-203ENST00000563226 TROQ12816 1431 aaPredicted RBP28.02■■■□□ 2.08
SMPD3-203ENST00000563226 CDK11AQ9UQ88 783 aaPredicted RBP28.01■■■□□ 2.07
SMPD3-203ENST00000563226 KIF14Q15058 1648 aa27.98■■■□□ 2.07
SMPD3-203ENST00000563226 ADCY10Q96PN6 1610 aa27.97■■■□□ 2.07
SMPD3-203ENST00000563226 SHROOM2Q13796 1616 aa27.96■■■□□ 2.07
SMPD3-203ENST00000563226 GCC2Q8IWJ2 1684 aa27.95■■■□□ 2.06
SMPD3-203ENST00000563226 CHIC2Q9UKJ5 165 aa27.95■■■□□ 2.06
SMPD3-203ENST00000563226 ATP10BO94823 1461 aa27.92■■■□□ 2.06
SMPD3-203ENST00000563226 SIN3AQ96ST3 1273 aa27.91■■■□□ 2.06
SMPD3-203ENST00000563226 RRP7BPQ9NSQ0 103 aa27.91■■■□□ 2.06
SMPD3-203ENST00000563226 PTPRGP23470 1445 aa27.9■■■□□ 2.06
SMPD3-203ENST00000563226 ZNF644Q9H582 1327 aaPredicted RBP27.9■■■□□ 2.06
SMPD3-203ENST00000563226 UACAQ9BZF9 1416 aa27.9■■■□□ 2.06
SMPD3-203ENST00000563226 ITSN2Q9NZM3 1697 aa27.89■■■□□ 2.05
SMPD3-203ENST00000563226 DNMT1P26358 1616 aaKnown RBP27.88■■■□□ 2.05
SMPD3-203ENST00000563226 KDM6BO15054 1643 aa27.88■■■□□ 2.05
SMPD3-203ENST00000563226 ERCC6L2Q5T890 1561 aa27.87■■■□□ 2.05
SMPD3-203ENST00000563226 AKNAQ7Z591 1439 aa27.87■■■□□ 2.05
SMPD3-203ENST00000563226 DAPK1P53355 1430 aa27.86■■■□□ 2.05
SMPD3-203ENST00000563226 GPATCH8Q9UKJ3 1502 aaKnown RBP27.86■■■□□ 2.05
SMPD3-203ENST00000563226 ABCC5O15440 1437 aa27.84■■■□□ 2.05
SMPD3-203ENST00000563226 NEUROD1Q13562 356 aa27.83■■■□□ 2.05
SMPD3-203ENST00000563226 CAMSAP2Q08AD1 1489 aa27.82■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms