RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 NISCHQ9Y2I1 1504 aa42.07■■■■■ 4.33
SMPD3-203ENST00000563226 CCDC180Q9P1Z9 1646 aa36.33■■■■□ 3.41
SMPD3-203ENST00000563226 ZCCHC6Q5VYS8 1495 aaKnown RBP35.46■■■■□ 3.27
SMPD3-203ENST00000563226 SHROOM4Q9ULL8 1493 aa34.97■■■■□ 3.19
SMPD3-203ENST00000563226 DCAF8L2P0C7V8 631 aa34.74■■■■□ 3.15
SMPD3-203ENST00000563226 DCAF1Q9Y4B6 1507 aa34.65■■■■□ 3.14
SMPD3-203ENST00000563226 ABCC9O60706 1549 aa34.08■■■■□ 3.05
SMPD3-203ENST00000563226 MYO15BQ96JP2 1530 aa33.98■■■■□ 3.03
SMPD3-203ENST00000563226 SUPT5HO00267 1087 aaKnown RBP33.86■■■■□ 3.01
SMPD3-203ENST00000563226 SCRIBQ14160 1630 aa33.71■■■□□ 2.99
SMPD3-203ENST00000563226 NACADO15069 1562 aa33.7■■■□□ 2.98
SMPD3-203ENST00000563226 RB1CC1Q8TDY2 1594 aa33.31■■■□□ 2.92
SMPD3-203ENST00000563226 RSF1Q96T23 1441 aaPredicted RBP32.9■■■□□ 2.86
SMPD3-203ENST00000563226 UNC13AQ9UPW8 1703 aa32.86■■■□□ 2.85
SMPD3-203ENST00000563226 CECR2Q9BXF3 1484 aa32.78■■■□□ 2.84
SMPD3-203ENST00000563226 CHIC1Q5VXU3 224 aa32.63■■■□□ 2.81
SMPD3-203ENST00000563226 MROH2BQ7Z745 1585 aa32.63■■■□□ 2.81
SMPD3-203ENST00000563226 BICRAQ9NZM4 1560 aa32.43■■■□□ 2.78
SMPD3-203ENST00000563226 WIZO95785 1651 aa32.43■■■□□ 2.78
SMPD3-203ENST00000563226 BAZ1AQ9NRL2 1556 aaPredicted RBP32.4■■■□□ 2.78
SMPD3-203ENST00000563226 PABPN1Q86U42 306 aaKnown RBP eCLIP32.3■■■□□ 2.76
SMPD3-203ENST00000563226 SMARCA4P51532 1647 aa32.25■■■□□ 2.75
SMPD3-203ENST00000563226 TOP2AP11388 1531 aaKnown RBP31.96■■■□□ 2.71
SMPD3-203ENST00000563226 SMARCA2P51531 1590 aa31.75■■■□□ 2.67
SMPD3-203ENST00000563226 EIF4G1Q04637 1599 aaKnown RBP31.74■■■□□ 2.67
SMPD3-203ENST00000563226 PEG3Q9GZU2 1588 aa31.74■■■□□ 2.67
SMPD3-203ENST00000563226 CCDC88BA6NC98 1476 aa31.71■■■□□ 2.67
SMPD3-203ENST00000563226 TRIM41Q8WV44 630 aa31.67■■■□□ 2.66
SMPD3-203ENST00000563226 ATAD2BQ9ULI0 1458 aa31.57■■■□□ 2.64
SMPD3-203ENST00000563226 LOC105371045A0A1W2PR82 267 aa31.53■■■□□ 2.64
SMPD3-203ENST00000563226 BAZ1BQ9UIG0 1483 aaKnown RBP31.42■■■□□ 2.62
SMPD3-203ENST00000563226 ABCC8Q09428 1581 aa31.34■■■□□ 2.61
SMPD3-203ENST00000563226 FAM9AQ8IZU1 332 aaPredicted RBP31.29■■■□□ 2.6
SMPD3-203ENST00000563226 HMGXB3Q12766 1538 aa31.13■■■□□ 2.57
SMPD3-203ENST00000563226 NCAPD3P42695 1498 aa31.12■■■□□ 2.57
SMPD3-203ENST00000563226 EHMT2Q96KQ7 1210 aa30.94■■■□□ 2.54
SMPD3-203ENST00000563226 WRNQ14191 1432 aaPredicted RBP eCLIP30.92■■■□□ 2.54
SMPD3-203ENST00000563226 SYNJ1O43426 1573 aa30.86■■■□□ 2.53
SMPD3-203ENST00000563226 SOGA1O94964 1423 aa30.83■■■□□ 2.53
SMPD3-203ENST00000563226 CC2D2AQ9P2K1 1620 aa30.8■■■□□ 2.52
SMPD3-203ENST00000563226 RUSC2Q8N2Y8 1516 aa30.74■■■□□ 2.51
SMPD3-203ENST00000563226 EEA1Q15075 1411 aa30.64■■■□□ 2.5
SMPD3-203ENST00000563226 PCGF6Q9BYE7 350 aa30.64■■■□□ 2.5
SMPD3-203ENST00000563226 CFTRP13569 1480 aa30.63■■■□□ 2.49
SMPD3-203ENST00000563226 TOP2BQ02880 1626 aa30.6■■■□□ 2.49
SMPD3-203ENST00000563226 BIVM-ERCC5R4GMW8 1640 aa30.56■■■□□ 2.48
SMPD3-203ENST00000563226 CSRNP3Q8WYN3 585 aa30.54■■■□□ 2.48
SMPD3-203ENST00000563226 PRDM2Q13029 1718 aa30.52■■■□□ 2.48
SMPD3-203ENST00000563226 CUX1P39880 1505 aa30.45■■■□□ 2.46
SMPD3-203ENST00000563226 CADPSQ9ULU8 1353 aa30.41■■■□□ 2.46
SMPD3-203ENST00000563226 GOLGA3Q08378 1498 aa30.35■■■□□ 2.45
SMPD3-203ENST00000563226 TNIKQ9UKE5 1360 aa30.35■■■□□ 2.45
SMPD3-203ENST00000563226 TRIM26Q12899 539 aaPredicted RBP30.35■■■□□ 2.45
SMPD3-203ENST00000563226 KIF21BO75037 1637 aa30.32■■■□□ 2.44
SMPD3-203ENST00000563226 CEP162Q5TB80 1403 aa30.31■■■□□ 2.44
SMPD3-203ENST00000563226 CEP164Q9UPV0 1460 aa30.28■■■□□ 2.44
SMPD3-203ENST00000563226 UBTFP17480 764 aaKnown RBP30.26■■■□□ 2.43
SMPD3-203ENST00000563226 RAPGEF2Q9Y4G8 1499 aa30.15■■■□□ 2.42
SMPD3-203ENST00000563226 HRCP23327 699 aa30.14■■■□□ 2.42
SMPD3-203ENST00000563226 NESP48681 1621 aa30.14■■■□□ 2.41
SMPD3-203ENST00000563226 FANCD2Q9BXW9 1451 aa30.12■■■□□ 2.41
SMPD3-203ENST00000563226 PPARGC1BQ86YN6 1023 aaKnown RBP30.09■■■□□ 2.41
SMPD3-203ENST00000563226 DNAJC5BQ9UF47 199 aa30.07■■■□□ 2.4
SMPD3-203ENST00000563226 KIF27Q86VH2 1401 aa30.05■■■□□ 2.4
SMPD3-203ENST00000563226 PRXQ9BXM0 1461 aa30.02■■■□□ 2.4
SMPD3-203ENST00000563226 FGD5Q6ZNL6 1462 aa30.01■■■□□ 2.39
SMPD3-203ENST00000563226 ERICH3Q5RHP9 1530 aa29.98■■■□□ 2.39
SMPD3-203ENST00000563226 LAMC3Q9Y6N6 1575 aa29.98■■■□□ 2.39
SMPD3-203ENST00000563226 CLIP1P30622 1438 aa29.92■■■□□ 2.38
SMPD3-203ENST00000563226 CUX2O14529 1486 aa29.92■■■□□ 2.38
SMPD3-203ENST00000563226 DNMBPQ6XZF7 1577 aa29.91■■■□□ 2.38
SMPD3-203ENST00000563226 TOPBP1Q92547 1522 aa29.86■■■□□ 2.37
SMPD3-203ENST00000563226 RANGAP1P46060 587 aaPredicted RBP29.78■■■□□ 2.36
SMPD3-203ENST00000563226 POLA1P09884 1462 aaPredicted RBP29.78■■■□□ 2.36
SMPD3-203ENST00000563226 IGF1RP08069 1367 aa29.78■■■□□ 2.36
SMPD3-203ENST00000563226 URB2Q14146 1524 aaKnown RBP29.77■■■□□ 2.36
SMPD3-203ENST00000563226 RAD54L2Q9Y4B4 1467 aa29.76■■■□□ 2.35
SMPD3-203ENST00000563226 TTBK1Q5TCY1 1321 aaPredicted RBP29.75■■■□□ 2.35
SMPD3-203ENST00000563226 KIF21AQ7Z4S6 1674 aa29.74■■■□□ 2.35
SMPD3-203ENST00000563226 VPS8Q8N3P4 1428 aa29.73■■■□□ 2.35
SMPD3-203ENST00000563226 PDS5BQ9NTI5 1447 aa29.72■■■□□ 2.35
SMPD3-203ENST00000563226 ABCA10Q8WWZ4 1543 aa29.68■■■□□ 2.34
SMPD3-203ENST00000563226 CARMIL1Q5VZK9 1371 aa29.62■■■□□ 2.33
SMPD3-203ENST00000563226 ARAP1Q96P48 1450 aa29.62■■■□□ 2.33
SMPD3-203ENST00000563226 WDR97A6NE52 1622 aa29.6■■■□□ 2.33
SMPD3-203ENST00000563226 ARHGAP35Q9NRY4 1499 aa29.49■■■□□ 2.31
SMPD3-203ENST00000563226 ABCA5Q8WWZ7 1642 aa29.44■■■□□ 2.3
SMPD3-203ENST00000563226 CUL7Q14999 1698 aa29.43■■■□□ 2.3
SMPD3-203ENST00000563226 TDRD9Q8NDG6 1382 aaKnown RBP29.4■■■□□ 2.3
SMPD3-203ENST00000563226 APLP2Q06481 763 aa29.38■■■□□ 2.29
SMPD3-203ENST00000563226 TARBP1Q13395 1621 aaKnown RBP29.38■■■□□ 2.29
SMPD3-203ENST00000563226 MRC2Q9UBG0 1479 aa29.35■■■□□ 2.29
SMPD3-203ENST00000563226 GAPVD1Q14C86 1478 aa29.33■■■□□ 2.29
SMPD3-203ENST00000563226 ZEB1P37275 1124 aaPredicted RBP29.3■■■□□ 2.28
SMPD3-203ENST00000563226 CTTNBP2Q8WZ74 1663 aa29.27■■■□□ 2.28
SMPD3-203ENST00000563226 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.25■■■□□ 2.27
SMPD3-203ENST00000563226 KANK4Q5T7N3 995 aaPredicted RBP29.21■■■□□ 2.27
SMPD3-203ENST00000563226 WDR62O43379 1518 aa29.18■■■□□ 2.26
SMPD3-203ENST00000563226 PBRM1Q86U86 1689 aa29.18■■■□□ 2.26
SMPD3-203ENST00000563226 AQRO60306 1485 aaKnown RBP eCLIP29.13■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms