RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PPARGC1BQ86YN6 1023 aaKnown RBP33.38■■■□□ 2.93
CLN3-209ENST00000561689 CTTNBP2Q8WZ74 1663 aa33.35■■■□□ 2.93
CLN3-209ENST00000561689 CHMP7Q8WUX9 453 aaPredicted RBP33.31■■■□□ 2.92
CLN3-209ENST00000561689 FBLN2P98095 1184 aa33.3■■■□□ 2.92
CLN3-209ENST00000561689 SYNJ2O15056 1496 aa33.29■■■□□ 2.92
CLN3-209ENST00000561689 GRIN2AQ12879 1464 aa33.29■■■□□ 2.92
CLN3-209ENST00000561689 P3H3Q8IVL6 736 aa33.27■■■□□ 2.92
CLN3-209ENST00000561689 PCGF6Q9BYE7 350 aa33.21■■■□□ 2.91
CLN3-209ENST00000561689 TRIM26Q12899 539 aaPredicted RBP33.16■■■□□ 2.9
CLN3-209ENST00000561689 EFCAB5A4FU69 1503 aa33.16■■■□□ 2.9
CLN3-209ENST00000561689 FHOD3Q2V2M9 1422 aa33.15■■■□□ 2.9
CLN3-209ENST00000561689 TTBK1Q5TCY1 1321 aaPredicted RBP33.15■■■□□ 2.9
CLN3-209ENST00000561689 IQGAP2Q13576 1575 aa33.14■■■□□ 2.9
CLN3-209ENST00000561689 APLP2Q06481 763 aa33.11■■■□□ 2.89
CLN3-209ENST00000561689 KIAA0586Q9BVV6 1533 aa33.11■■■□□ 2.89
CLN3-209ENST00000561689 CEP170Q5SW79 1584 aa33.07■■■□□ 2.88
CLN3-209ENST00000561689 SAMD9Q5K651 1589 aa33.05■■■□□ 2.88
CLN3-209ENST00000561689 NUP160Q12769 1436 aa33.03■■■□□ 2.88
CLN3-209ENST00000561689 UGGT2Q9NYU1 1516 aa32.97■■■□□ 2.87
CLN3-209ENST00000561689 FMN1Q68DA7 1419 aa32.92■■■□□ 2.86
CLN3-209ENST00000561689 ATP1B4Q9UN42 357 aaPredicted RBP32.91■■■□□ 2.86
CLN3-209ENST00000561689 CHD1O14646 1710 aa32.89■■■□□ 2.86
CLN3-209ENST00000561689 PCF11O94913 1555 aaKnown RBP32.89■■■□□ 2.86
CLN3-209ENST00000561689 KANK4Q5T7N3 995 aaPredicted RBP32.87■■■□□ 2.85
CLN3-209ENST00000561689 JPH4Q96JJ6 628 aa32.87■■■□□ 2.85
CLN3-209ENST00000561689 DISP1Q96F81 1524 aa32.86■■■□□ 2.85
CLN3-209ENST00000561689 CASKIN1Q8WXD9 1431 aa32.85■■■□□ 2.85
CLN3-209ENST00000561689 FYCO1Q9BQS8 1478 aa32.82■■■□□ 2.84
CLN3-209ENST00000561689 KIAA0556O60303 1618 aa32.8■■■□□ 2.84
CLN3-209ENST00000561689 TIAM1Q13009 1591 aa32.74■■■□□ 2.83
CLN3-209ENST00000561689 MAP3K1Q13233 1512 aa32.73■■■□□ 2.83
CLN3-209ENST00000561689 CARMIL2Q6F5E8 1435 aa32.71■■■□□ 2.83
CLN3-209ENST00000561689 PRG4Q92954 1404 aaPredicted RBP32.64■■■□□ 2.82
CLN3-209ENST00000561689 LRRC9Q6ZRR7 1453 aa32.63■■■□□ 2.81
CLN3-209ENST00000561689 CFAP43Q8NDM7 1665 aa32.61■■■□□ 2.81
CLN3-209ENST00000561689 ARID3CA6NKF2 412 aa32.54■■■□□ 2.8
CLN3-209ENST00000561689 HECW1Q76N89 1606 aa32.54■■■□□ 2.8
CLN3-209ENST00000561689 CLASP1Q7Z460 1538 aa32.54■■■□□ 2.8
CLN3-209ENST00000561689 LRRIQ1Q96JM4 1722 aa32.53■■■□□ 2.8
CLN3-209ENST00000561689 SHROOM2Q13796 1616 aa32.52■■■□□ 2.8
CLN3-209ENST00000561689 PLB1Q6P1J6 1458 aa32.49■■■□□ 2.79
CLN3-209ENST00000561689 EPRSP07814 1512 aaKnown RBP32.49■■■□□ 2.79
CLN3-209ENST00000561689 CCDC18Q5T9S5 1454 aa32.48■■■□□ 2.79
CLN3-209ENST00000561689 MTUS2Q5JR59 1369 aa32.46■■■□□ 2.79
CLN3-209ENST00000561689 RAPGEF6Q8TEU7 1601 aa32.46■■■□□ 2.79
CLN3-209ENST00000561689 NUP153P49790 1475 aaKnown RBP32.45■■■□□ 2.79
CLN3-209ENST00000561689 CDK13Q14004 1512 aaKnown RBP32.44■■■□□ 2.78
CLN3-209ENST00000561689 PTPRGP23470 1445 aa32.44■■■□□ 2.78
CLN3-209ENST00000561689 ERCC6L2Q5T890 1561 aa32.42■■■□□ 2.78
CLN3-209ENST00000561689 PHLDB1Q86UU1 1377 aa32.39■■■□□ 2.78
CLN3-209ENST00000561689 OSCARQ8IYS5 282 aa32.38■■■□□ 2.77
CLN3-209ENST00000561689 MAGI3Q5TCQ9 1506 aa32.36■■■□□ 2.77
CLN3-209ENST00000561689 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.36■■■□□ 2.77
CLN3-209ENST00000561689 HNRNPUL2Q1KMD3 747 aaKnown RBP32.36■■■□□ 2.77
CLN3-209ENST00000561689 RRBP1Q9P2E9 1410 aaKnown RBP32.35■■■□□ 2.77
CLN3-209ENST00000561689 ABCA8O94911 1581 aa32.33■■■□□ 2.77
CLN3-209ENST00000561689 EHBP1L1Q8N3D4 1523 aa32.31■■■□□ 2.76
CLN3-209ENST00000561689 CCNB3Q8WWL7 1395 aa32.31■■■□□ 2.76
CLN3-209ENST00000561689 NCOA2Q15596 1464 aa32.25■■■□□ 2.75
CLN3-209ENST00000561689 CDK11AQ9UQ88 783 aaPredicted RBP32.24■■■□□ 2.75
CLN3-209ENST00000561689 UACAQ9BZF9 1416 aa32.22■■■□□ 2.75
CLN3-209ENST00000561689 SUPT6HQ7KZ85 1726 aaKnown RBP32.2■■■□□ 2.75
CLN3-209ENST00000561689 ATP10BO94823 1461 aa32.19■■■□□ 2.74
CLN3-209ENST00000561689 FAM50AQ14320 339 aaKnown RBP32.16■■■□□ 2.74
CLN3-209ENST00000561689 ARHGEF11O15085 1522 aa32.14■■■□□ 2.74
CLN3-209ENST00000561689 ITGAEP38570 1179 aa32.14■■■□□ 2.74
CLN3-209ENST00000561689 MYOM3Q5VTT5 1437 aa32.12■■■□□ 2.73
CLN3-209ENST00000561689 FGD6Q6ZV73 1430 aa32.12■■■□□ 2.73
CLN3-209ENST00000561689 TROQ12816 1431 aaPredicted RBP32.11■■■□□ 2.73
CLN3-209ENST00000561689 HRCP23327 699 aa32.1■■■□□ 2.73
CLN3-209ENST00000561689 PLEKHD1A6NEE1 506 aa32.09■■■□□ 2.73
CLN3-209ENST00000561689 ABCC2Q92887 1545 aa32.08■■■□□ 2.73
CLN3-209ENST00000561689 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.99■■■□□ 2.71
CLN3-209ENST00000561689 UHRF1BP1LA0JNW5 1464 aa31.99■■■□□ 2.71
CLN3-209ENST00000561689 KIF14Q15058 1648 aa31.95■■■□□ 2.71
CLN3-209ENST00000561689 CCER1Q8TC90 406 aaPredicted RBP31.92■■■□□ 2.7
CLN3-209ENST00000561689 MIA2Q96PC5 1412 aa31.91■■■□□ 2.7
CLN3-209ENST00000561689 ADCY10Q96PN6 1610 aa31.91■■■□□ 2.7
CLN3-209ENST00000561689 PTPN23Q9H3S7 1636 aa31.91■■■□□ 2.7
CLN3-209ENST00000561689 KDM5BQ9UGL1 1544 aa31.88■■■□□ 2.69
CLN3-209ENST00000561689 TCOF1Q13428 1488 aaKnown RBP31.85■■■□□ 2.69
CLN3-209ENST00000561689 ZCCHC11Q5TAX3 1644 aaKnown RBP31.85■■■□□ 2.69
CLN3-209ENST00000561689 GPATCH8Q9UKJ3 1502 aaKnown RBP31.84■■■□□ 2.69
CLN3-209ENST00000561689 ABCC10Q5T3U5 1492 aa31.82■■■□□ 2.69
CLN3-209ENST00000561689 CFDP1Q9UEE9 299 aaPredicted RBP31.82■■■□□ 2.68
CLN3-209ENST00000561689 ZNF644Q9H582 1327 aaPredicted RBP31.81■■■□□ 2.68
CLN3-209ENST00000561689 PTPRKQ15262 1439 aa31.79■■■□□ 2.68
CLN3-209ENST00000561689 KCNH8Q96L42 1107 aa31.78■■■□□ 2.68
CLN3-209ENST00000561689 ZNF777Q9ULD5 760 aaPredicted RBP31.75■■■□□ 2.67
CLN3-209ENST00000561689 ITSN2Q9NZM3 1697 aa31.73■■■□□ 2.67
CLN3-209ENST00000561689 ZEB1P37275 1124 aaPredicted RBP31.71■■■□□ 2.67
CLN3-209ENST00000561689 SETD5Q9C0A6 1442 aa31.71■■■□□ 2.67
CLN3-209ENST00000561689 RAB3GAP2Q9H2M9 1393 aa31.7■■■□□ 2.67
CLN3-209ENST00000561689 CAMSAP2Q08AD1 1489 aa31.67■■■□□ 2.66
CLN3-209ENST00000561689 CHIC2Q9UKJ5 165 aa31.67■■■□□ 2.66
CLN3-209ENST00000561689 CDC42BPAQ5VT25 1732 aa31.67■■■□□ 2.66
CLN3-209ENST00000561689 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.67■■■□□ 2.66
CLN3-209ENST00000561689 NPM1P06748 294 aaKnown RBP eCLIP31.65■■■□□ 2.66
CLN3-209ENST00000561689 TTC37Q6PGP7 1564 aa31.64■■■□□ 2.66
CLN3-209ENST00000561689 CYB5RLQ6IPT4 315 aa31.62■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms