RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 NISCHQ9Y2I1 1504 aa48.34■■■■■ 5.33
CLN3-209ENST00000561689 CCDC180Q9P1Z9 1646 aa42.06■■■■■ 4.32
CLN3-209ENST00000561689 ZCCHC6Q5VYS8 1495 aaKnown RBP40.57■■■■■ 4.08
CLN3-209ENST00000561689 DCAF8L2P0C7V8 631 aa40.19■■■■■ 4.02
CLN3-209ENST00000561689 ABCC9O60706 1549 aa40.11■■■■■ 4.01
CLN3-209ENST00000561689 DCAF1Q9Y4B6 1507 aa39.88■■■■□ 3.97
CLN3-209ENST00000561689 SHROOM4Q9ULL8 1493 aa39.55■■■■□ 3.92
CLN3-209ENST00000561689 MYO15BQ96JP2 1530 aa39.43■■■■□ 3.9
CLN3-209ENST00000561689 NACADO15069 1562 aa39.27■■■■□ 3.88
CLN3-209ENST00000561689 RB1CC1Q8TDY2 1594 aa38.98■■■■□ 3.83
CLN3-209ENST00000561689 SCRIBQ14160 1630 aa38.84■■■■□ 3.81
CLN3-209ENST00000561689 UNC13AQ9UPW8 1703 aa38.13■■■■□ 3.69
CLN3-209ENST00000561689 SUPT5HO00267 1087 aaKnown RBP38.01■■■■□ 3.68
CLN3-209ENST00000561689 PABPN1Q86U42 306 aaKnown RBP eCLIP37.89■■■■□ 3.66
CLN3-209ENST00000561689 BICRAQ9NZM4 1560 aa37.84■■■■□ 3.65
CLN3-209ENST00000561689 CECR2Q9BXF3 1484 aa37.66■■■■□ 3.62
CLN3-209ENST00000561689 RSF1Q96T23 1441 aaPredicted RBP37.52■■■■□ 3.6
CLN3-209ENST00000561689 MROH2BQ7Z745 1585 aa37.39■■■■□ 3.58
CLN3-209ENST00000561689 BAZ1AQ9NRL2 1556 aaPredicted RBP37.31■■■■□ 3.56
CLN3-209ENST00000561689 SMARCA4P51532 1647 aa37.15■■■■□ 3.54
CLN3-209ENST00000561689 WIZO95785 1651 aa37.05■■■■□ 3.52
CLN3-209ENST00000561689 EIF4G1Q04637 1599 aaKnown RBP36.72■■■■□ 3.47
CLN3-209ENST00000561689 PEG3Q9GZU2 1588 aa36.66■■■■□ 3.46
CLN3-209ENST00000561689 ATAD2BQ9ULI0 1458 aa36.63■■■■□ 3.45
CLN3-209ENST00000561689 TOP2AP11388 1531 aaKnown RBP36.62■■■■□ 3.45
CLN3-209ENST00000561689 SMARCA2P51531 1590 aa36.54■■■■□ 3.44
CLN3-209ENST00000561689 BAZ1BQ9UIG0 1483 aaKnown RBP36.41■■■■□ 3.42
CLN3-209ENST00000561689 CCDC88BA6NC98 1476 aa36.32■■■■□ 3.41
CLN3-209ENST00000561689 NCAPD3P42695 1498 aa36.31■■■■□ 3.4
CLN3-209ENST00000561689 CHIC1Q5VXU3 224 aa36.26■■■■□ 3.4
CLN3-209ENST00000561689 CC2D2AQ9P2K1 1620 aa36.21■■■■□ 3.39
CLN3-209ENST00000561689 HMGXB3Q12766 1538 aa36.18■■■■□ 3.38
CLN3-209ENST00000561689 TRIM41Q8WV44 630 aa35.69■■■■□ 3.3
CLN3-209ENST00000561689 DNAJC5BQ9UF47 199 aa35.55■■■■□ 3.28
CLN3-209ENST00000561689 ABCC8Q09428 1581 aa35.54■■■■□ 3.28
CLN3-209ENST00000561689 CFTRP13569 1480 aa35.48■■■■□ 3.27
CLN3-209ENST00000561689 CADPSQ9ULU8 1353 aa35.41■■■■□ 3.26
CLN3-209ENST00000561689 WRNQ14191 1432 aaPredicted RBP eCLIP35.31■■■■□ 3.24
CLN3-209ENST00000561689 NESP48681 1621 aa35.18■■■■□ 3.22
CLN3-209ENST00000561689 SYNJ1O43426 1573 aa35.14■■■■□ 3.22
CLN3-209ENST00000561689 FAM9AQ8IZU1 332 aaPredicted RBP35.13■■■■□ 3.21
CLN3-209ENST00000561689 PRDM2Q13029 1718 aa35.1■■■■□ 3.21
CLN3-209ENST00000561689 LAMC3Q9Y6N6 1575 aa35.04■■■■□ 3.2
CLN3-209ENST00000561689 FANCD2Q9BXW9 1451 aa35.02■■■■□ 3.2
CLN3-209ENST00000561689 TOP2BQ02880 1626 aa34.96■■■■□ 3.19
CLN3-209ENST00000561689 LOC105371045A0A1W2PR82 267 aa34.96■■■■□ 3.19
CLN3-209ENST00000561689 CUX1P39880 1505 aa34.95■■■■□ 3.19
CLN3-209ENST00000561689 SOGA1O94964 1423 aa34.89■■■■□ 3.18
CLN3-209ENST00000561689 BIVM-ERCC5R4GMW8 1640 aa34.88■■■■□ 3.17
CLN3-209ENST00000561689 PDS5BQ9NTI5 1447 aa34.84■■■■□ 3.17
CLN3-209ENST00000561689 CEP164Q9UPV0 1460 aa34.78■■■■□ 3.16
CLN3-209ENST00000561689 RUSC2Q8N2Y8 1516 aa34.76■■■■□ 3.16
CLN3-209ENST00000561689 EHMT2Q96KQ7 1210 aa34.71■■■■□ 3.15
CLN3-209ENST00000561689 EEA1Q15075 1411 aa34.67■■■■□ 3.14
CLN3-209ENST00000561689 KIF21AQ7Z4S6 1674 aa34.62■■■■□ 3.13
CLN3-209ENST00000561689 CSRNP3Q8WYN3 585 aa34.62■■■■□ 3.13
CLN3-209ENST00000561689 DNMBPQ6XZF7 1577 aa34.61■■■■□ 3.13
CLN3-209ENST00000561689 TOPBP1Q92547 1522 aa34.61■■■■□ 3.13
CLN3-209ENST00000561689 FGD5Q6ZNL6 1462 aa34.6■■■■□ 3.13
CLN3-209ENST00000561689 URB2Q14146 1524 aaKnown RBP34.58■■■■□ 3.13
CLN3-209ENST00000561689 POLA1P09884 1462 aaPredicted RBP34.44■■■■□ 3.1
CLN3-209ENST00000561689 KIF27Q86VH2 1401 aa34.42■■■■□ 3.1
CLN3-209ENST00000561689 MRC2Q9UBG0 1479 aa34.39■■■■□ 3.1
CLN3-209ENST00000561689 RAD54L2Q9Y4B4 1467 aa34.39■■■■□ 3.1
CLN3-209ENST00000561689 CUX2O14529 1486 aa34.38■■■■□ 3.09
CLN3-209ENST00000561689 ERCC6Q03468 1493 aa34.37■■■■□ 3.09
CLN3-209ENST00000561689 ABCA10Q8WWZ4 1543 aa34.25■■■■□ 3.07
CLN3-209ENST00000561689 GOLGA3Q08378 1498 aa34.24■■■■□ 3.07
CLN3-209ENST00000561689 UBTFP17480 764 aaKnown RBP34.22■■■■□ 3.07
CLN3-209ENST00000561689 KIF21BO75037 1637 aa34.21■■■■□ 3.07
CLN3-209ENST00000561689 WDR62O43379 1518 aa34.18■■■■□ 3.06
CLN3-209ENST00000561689 IGF1RP08069 1367 aa34.16■■■■□ 3.06
CLN3-209ENST00000561689 RAPGEF2Q9Y4G8 1499 aa34.16■■■■□ 3.06
CLN3-209ENST00000561689 PRXQ9BXM0 1461 aa34.15■■■■□ 3.06
CLN3-209ENST00000561689 TNIKQ9UKE5 1360 aa34.12■■■■□ 3.05
CLN3-209ENST00000561689 TDRD9Q8NDG6 1382 aaKnown RBP34.1■■■■□ 3.05
CLN3-209ENST00000561689 THOC2Q8NI27 1593 aaKnown RBP34.08■■■■□ 3.05
CLN3-209ENST00000561689 WDR97A6NE52 1622 aa34.06■■■■□ 3.04
CLN3-209ENST00000561689 TARBP1Q13395 1621 aaKnown RBP34.05■■■■□ 3.04
CLN3-209ENST00000561689 ERICH3Q5RHP9 1530 aa34■■■■□ 3.03
CLN3-209ENST00000561689 CARMIL1Q5VZK9 1371 aa33.98■■■■□ 3.03
CLN3-209ENST00000561689 CEP162Q5TB80 1403 aa33.96■■■■□ 3.03
CLN3-209ENST00000561689 GAPVD1Q14C86 1478 aa33.96■■■■□ 3.03
CLN3-209ENST00000561689 IFT140Q96RY7 1462 aa33.95■■■■□ 3.02
CLN3-209ENST00000561689 ABCA5Q8WWZ7 1642 aa33.94■■■■□ 3.02
CLN3-209ENST00000561689 AQRO60306 1485 aaKnown RBP eCLIP33.88■■■■□ 3.016e-6■■■■□ 25.1
CLN3-209ENST00000561689 ZNF608Q9ULD9 1512 aaPredicted RBP33.84■■■■□ 3.01
CLN3-209ENST00000561689 RANGAP1P46060 587 aaPredicted RBP33.8■■■■□ 3
CLN3-209ENST00000561689 CUL7Q14999 1698 aa33.76■■■■□ 3
CLN3-209ENST00000561689 CLIP1P30622 1438 aa33.73■■■□□ 2.99
CLN3-209ENST00000561689 GRIN2BQ13224 1484 aa33.69■■■□□ 2.98
CLN3-209ENST00000561689 PBRM1Q86U86 1689 aa33.66■■■□□ 2.98
CLN3-209ENST00000561689 EIF4G3O43432 1585 aaKnown RBP33.63■■■□□ 2.97
CLN3-209ENST00000561689 FHAD1B1AJZ9 1412 aa33.57■■■□□ 2.96
CLN3-209ENST00000561689 ADAMTS12P58397 1594 aa33.53■■■□□ 2.96
CLN3-209ENST00000561689 SNAPC4Q5SXM2 1469 aa33.51■■■□□ 2.95
CLN3-209ENST00000561689 ARHGAP35Q9NRY4 1499 aa33.4■■■□□ 2.94
CLN3-209ENST00000561689 ARAP1Q96P48 1450 aa33.39■■■□□ 2.94
CLN3-209ENST00000561689 MAGI1Q96QZ7 1491 aaPredicted RBP33.39■■■□□ 2.94
CLN3-209ENST00000561689 VPS8Q8N3P4 1428 aa33.39■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms