RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 EIF4G3O43432 1585 aaKnown RBP19.72■□□□□ 0.75
USP3-213ENST00000559711 SNAPC4Q5SXM2 1469 aa19.67■□□□□ 0.74
USP3-213ENST00000559711 APLP2Q06481 763 aa19.67■□□□□ 0.74
USP3-213ENST00000559711 CTTNBP2Q8WZ74 1663 aa19.67■□□□□ 0.74
USP3-213ENST00000559711 EFCAB5A4FU69 1503 aa19.67■□□□□ 0.74
USP3-213ENST00000559711 MAGI1Q96QZ7 1491 aaPredicted RBP19.66■□□□□ 0.74
USP3-213ENST00000559711 GRIN2AQ12879 1464 aa19.59■□□□□ 0.73
USP3-213ENST00000559711 SYNJ2O15056 1496 aa19.59■□□□□ 0.73
USP3-213ENST00000559711 P3H3Q8IVL6 736 aa19.59■□□□□ 0.73
USP3-213ENST00000559711 FHOD3Q2V2M9 1422 aa19.57■□□□□ 0.72
USP3-213ENST00000559711 TTBK1Q5TCY1 1321 aaPredicted RBP19.56■□□□□ 0.72
USP3-213ENST00000559711 SAMD9Q5K651 1589 aa19.56■□□□□ 0.72
USP3-213ENST00000559711 CHMP7Q8WUX9 453 aaPredicted RBP19.56■□□□□ 0.72
USP3-213ENST00000559711 KIAA0586Q9BVV6 1533 aa19.55■□□□□ 0.72
USP3-213ENST00000559711 IQGAP2Q13576 1575 aa19.54■□□□□ 0.72
USP3-213ENST00000559711 MAP3K1Q13233 1512 aa19.53■□□□□ 0.72
USP3-213ENST00000559711 FMN1Q68DA7 1419 aa19.52■□□□□ 0.72
USP3-213ENST00000559711 KANK4Q5T7N3 995 aaPredicted RBP19.51■□□□□ 0.71
USP3-213ENST00000559711 CASKIN1Q8WXD9 1431 aa19.5■□□□□ 0.71
USP3-213ENST00000559711 UGGT2Q9NYU1 1516 aa19.49■□□□□ 0.71
USP3-213ENST00000559711 NUP160Q12769 1436 aa19.48■□□□□ 0.71
USP3-213ENST00000559711 FYCO1Q9BQS8 1478 aa19.47■□□□□ 0.71
USP3-213ENST00000559711 FBLN2P98095 1184 aa19.46■□□□□ 0.71
USP3-213ENST00000559711 PCF11O94913 1555 aaKnown RBP19.45■□□□□ 0.7
USP3-213ENST00000559711 TIAM1Q13009 1591 aa19.44■□□□□ 0.7
USP3-213ENST00000559711 HRCP23327 699 aa19.43■□□□□ 0.7
USP3-213ENST00000559711 CEP170Q5SW79 1584 aa19.43■□□□□ 0.7
USP3-213ENST00000559711 DISP1Q96F81 1524 aa19.39■□□□□ 0.69
USP3-213ENST00000559711 LRRC9Q6ZRR7 1453 aa19.38■□□□□ 0.69
USP3-213ENST00000559711 ATP1B4Q9UN42 357 aaPredicted RBP19.37■□□□□ 0.69
USP3-213ENST00000559711 JPH4Q96JJ6 628 aa19.36■□□□□ 0.69
USP3-213ENST00000559711 KIAA0556O60303 1618 aa19.34■□□□□ 0.69
USP3-213ENST00000559711 CFAP43Q8NDM7 1665 aa19.34■□□□□ 0.69
USP3-213ENST00000559711 RRBP1Q9P2E9 1410 aaKnown RBP19.31■□□□□ 0.68
USP3-213ENST00000559711 CARMIL2Q6F5E8 1435 aa19.29■□□□□ 0.68
USP3-213ENST00000559711 CCDC18Q5T9S5 1454 aa19.26■□□□□ 0.67
USP3-213ENST00000559711 CCNB3Q8WWL7 1395 aa19.24■□□□□ 0.67
USP3-213ENST00000559711 HECW1Q76N89 1606 aa19.24■□□□□ 0.67
USP3-213ENST00000559711 MTUS2Q5JR59 1369 aa19.22■□□□□ 0.67
USP3-213ENST00000559711 PHLDB1Q86UU1 1377 aa19.22■□□□□ 0.67
USP3-213ENST00000559711 EPRSP07814 1512 aaKnown RBP19.22■□□□□ 0.67
USP3-213ENST00000559711 CHD1O14646 1710 aa19.22■□□□□ 0.67
USP3-213ENST00000559711 HNRNPUL2Q1KMD3 747 aaKnown RBP19.21■□□□□ 0.67
USP3-213ENST00000559711 LRRIQ1Q96JM4 1722 aa19.2■□□□□ 0.66
USP3-213ENST00000559711 PRG4Q92954 1404 aaPredicted RBP19.19■□□□□ 0.66
USP3-213ENST00000559711 ZEB1P37275 1124 aaPredicted RBP19.17■□□□□ 0.66
USP3-213ENST00000559711 NUP153P49790 1475 aaKnown RBP19.17■□□□□ 0.66
USP3-213ENST00000559711 EHBP1L1Q8N3D4 1523 aa19.16■□□□□ 0.66
USP3-213ENST00000559711 RAPGEF6Q8TEU7 1601 aa19.15■□□□□ 0.66
USP3-213ENST00000559711 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.14■□□□□ 0.65
USP3-213ENST00000559711 MAGI3Q5TCQ9 1506 aa19.13■□□□□ 0.65
USP3-213ENST00000559711 SHROOM2Q13796 1616 aa19.13■□□□□ 0.65
USP3-213ENST00000559711 PLB1Q6P1J6 1458 aa19.13■□□□□ 0.65
USP3-213ENST00000559711 CDK13Q14004 1512 aaKnown RBP19.12■□□□□ 0.65
USP3-213ENST00000559711 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.12■□□□□ 0.65
USP3-213ENST00000559711 NCOA2Q15596 1464 aa19.11■□□□□ 0.65
USP3-213ENST00000559711 ARHGEF11O15085 1522 aa19.11■□□□□ 0.65
USP3-213ENST00000559711 CLASP1Q7Z460 1538 aa19.1■□□□□ 0.65
USP3-213ENST00000559711 PTPRGP23470 1445 aa19.1■□□□□ 0.65
USP3-213ENST00000559711 CCER1Q8TC90 406 aaPredicted RBP19.09■□□□□ 0.65
USP3-213ENST00000559711 ABCA8O94911 1581 aa19.08■□□□□ 0.65
USP3-213ENST00000559711 CDK11AQ9UQ88 783 aaPredicted RBP19.08■□□□□ 0.65
USP3-213ENST00000559711 FGD6Q6ZV73 1430 aa19.08■□□□□ 0.64
USP3-213ENST00000559711 ARID3CA6NKF2 412 aa19.07■□□□□ 0.64
USP3-213ENST00000559711 SUPT6HQ7KZ85 1726 aaKnown RBP19.07■□□□□ 0.64
USP3-213ENST00000559711 MYOM3Q5VTT5 1437 aa19.06■□□□□ 0.64
USP3-213ENST00000559711 FAM50AQ14320 339 aaKnown RBP19.04■□□□□ 0.64
USP3-213ENST00000559711 TROQ12816 1431 aaPredicted RBP19■□□□□ 0.63
USP3-213ENST00000559711 ATP10BO94823 1461 aa19■□□□□ 0.63
USP3-213ENST00000559711 ITGAEP38570 1179 aa18.99■□□□□ 0.63
USP3-213ENST00000559711 ERCC6L2Q5T890 1561 aa18.99■□□□□ 0.63
USP3-213ENST00000559711 UACAQ9BZF9 1416 aa18.98■□□□□ 0.63
USP3-213ENST00000559711 MIA2Q96PC5 1412 aa18.97■□□□□ 0.63
USP3-213ENST00000559711 TCOF1Q13428 1488 aaKnown RBP18.94■□□□□ 0.62
USP3-213ENST00000559711 PLEKHD1A6NEE1 506 aa18.94■□□□□ 0.62
USP3-213ENST00000559711 OSCARQ8IYS5 282 aa18.93■□□□□ 0.62
USP3-213ENST00000559711 PTPN23Q9H3S7 1636 aa18.91■□□□□ 0.62
USP3-213ENST00000559711 SETD5Q9C0A6 1442 aa18.91■□□□□ 0.62
USP3-213ENST00000559711 ABCC2Q92887 1545 aa18.89■□□□□ 0.61
USP3-213ENST00000559711 ADCY10Q96PN6 1610 aa18.88■□□□□ 0.61
USP3-213ENST00000559711 UHRF1BP1LA0JNW5 1464 aa18.88■□□□□ 0.61
USP3-213ENST00000559711 RAB3GAP2Q9H2M9 1393 aa18.87■□□□□ 0.61
USP3-213ENST00000559711 PTPRKQ15262 1439 aa18.87■□□□□ 0.61
USP3-213ENST00000559711 CLSPNQ9HAW4 1339 aa18.86■□□□□ 0.61
USP3-213ENST00000559711 DHX57Q6P158 1386 aaKnown RBP18.86■□□□□ 0.61
USP3-213ENST00000559711 GPATCH8Q9UKJ3 1502 aaKnown RBP18.84■□□□□ 0.61
USP3-213ENST00000559711 ABCC10Q5T3U5 1492 aa18.83■□□□□ 0.61
USP3-213ENST00000559711 KIF14Q15058 1648 aa18.83■□□□□ 0.6
USP3-213ENST00000559711 CFDP1Q9UEE9 299 aaPredicted RBP18.81■□□□□ 0.6
USP3-213ENST00000559711 HFM1A2PYH4 1435 aa18.8■□□□□ 0.6
USP3-213ENST00000559711 KDM5BQ9UGL1 1544 aa18.79■□□□□ 0.6
USP3-213ENST00000559711 ZNF644Q9H582 1327 aaPredicted RBP18.78■□□□□ 0.6
USP3-213ENST00000559711 NAIPQ13075 1403 aa18.76■□□□□ 0.59
USP3-213ENST00000559711 AKNAQ7Z591 1439 aa18.76■□□□□ 0.59
USP3-213ENST00000559711 ITSN2Q9NZM3 1697 aa18.76■□□□□ 0.59
USP3-213ENST00000559711 ABCC5O15440 1437 aa18.74■□□□□ 0.59
USP3-213ENST00000559711 DAPK1P53355 1430 aa18.74■□□□□ 0.59
USP3-213ENST00000559711 CAMSAP2Q08AD1 1489 aa18.73■□□□□ 0.59
USP3-213ENST00000559711 ROCK1Q13464 1354 aa18.72■□□□□ 0.59
USP3-213ENST00000559711 CHIC2Q9UKJ5 165 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms