RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 AQRO60306 1485 aaKnown RBP eCLIP40.46■■■■■ 4.07
CCDC88C-205ENST00000553403 GRIN2BQ13224 1484 aa40.45■■■■■ 4.07
CCDC88C-205ENST00000553403 EFCAB5A4FU69 1503 aa40.45■■■■■ 4.07
CCDC88C-205ENST00000553403 FHAD1B1AJZ9 1412 aa40.43■■■■■ 4.06
CCDC88C-205ENST00000553403 ADAMTS12P58397 1594 aa40.37■■■■■ 4.05
CCDC88C-205ENST00000553403 ZNF608Q9ULD9 1512 aaPredicted RBP40.35■■■■■ 4.05
CCDC88C-205ENST00000553403 MAP3K1Q13233 1512 aa40.28■■■■■ 4.04
CCDC88C-205ENST00000553403 OSCARQ8IYS5 282 aa40.25■■■■■ 4.03
CCDC88C-205ENST00000553403 ZEB1P37275 1124 aaPredicted RBP40.24■■■■■ 4.03
CCDC88C-205ENST00000553403 EIF4G3O43432 1585 aaKnown RBP40.23■■■■■ 4.03
CCDC88C-205ENST00000553403 SAMD9Q5K651 1589 aa40.19■■■■■ 4.02
CCDC88C-205ENST00000553403 FHOD3Q2V2M9 1422 aa40.18■■■■■ 4.02
CCDC88C-205ENST00000553403 KANK4Q5T7N3 995 aaPredicted RBP40.16■■■■■ 4.02
CCDC88C-205ENST00000553403 P3H3Q8IVL6 736 aa40.13■■■■■ 4.01
CCDC88C-205ENST00000553403 TIAM1Q13009 1591 aa40.13■■■■■ 4.01
CCDC88C-205ENST00000553403 PCF11O94913 1555 aaKnown RBP40.1■■■■■ 4.01
CCDC88C-205ENST00000553403 SNAPC4Q5SXM2 1469 aa40.1■■■■■ 4.01
CCDC88C-205ENST00000553403 FMN1Q68DA7 1419 aa40.09■■■■■ 4.01
CCDC88C-205ENST00000553403 FYCO1Q9BQS8 1478 aa40.08■■■■■ 4.01
CCDC88C-205ENST00000553403 CASKIN1Q8WXD9 1431 aa40.07■■■■■ 4
CCDC88C-205ENST00000553403 MAGI1Q96QZ7 1491 aaPredicted RBP40.04■■■■■ 4
CCDC88C-205ENST00000553403 IQGAP2Q13576 1575 aa40.04■■■■■ 4
CCDC88C-205ENST00000553403 CFAP43Q8NDM7 1665 aa40.01■■■■■ 4
CCDC88C-205ENST00000553403 GRIN2AQ12879 1464 aa39.95■■■■□ 3.99
CCDC88C-205ENST00000553403 LRRC9Q6ZRR7 1453 aa39.95■■■■□ 3.99
CCDC88C-205ENST00000553403 RRBP1Q9P2E9 1410 aaKnown RBP39.92■■■■□ 3.98
CCDC88C-205ENST00000553403 KIAA0586Q9BVV6 1533 aa39.9■■■■□ 3.98
CCDC88C-205ENST00000553403 UGGT2Q9NYU1 1516 aa39.89■■■■□ 3.98
CCDC88C-205ENST00000553403 SYNJ2O15056 1496 aa39.89■■■■□ 3.98
CCDC88C-205ENST00000553403 FBLN2P98095 1184 aa39.87■■■■□ 3.97
CCDC88C-205ENST00000553403 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.86■■■■□ 3.97
CCDC88C-205ENST00000553403 CCER1Q8TC90 406 aaPredicted RBP39.82■■■■□ 3.96
CCDC88C-205ENST00000553403 HNRNPUL2Q1KMD3 747 aaKnown RBP39.8■■■■□ 3.96
CCDC88C-205ENST00000553403 ATP1B4Q9UN42 357 aaPredicted RBP39.78■■■■□ 3.96
CCDC88C-205ENST00000553403 CHMP7Q8WUX9 453 aaPredicted RBP39.75■■■■□ 3.95
CCDC88C-205ENST00000553403 CHD1O14646 1710 aa39.75■■■■□ 3.95
CCDC88C-205ENST00000553403 CCNB3Q8WWL7 1395 aa39.73■■■■□ 3.95
CCDC88C-205ENST00000553403 CEP170Q5SW79 1584 aa39.67■■■■□ 3.94
CCDC88C-205ENST00000553403 NUP160Q12769 1436 aa39.65■■■■□ 3.94
CCDC88C-205ENST00000553403 KIAA0556O60303 1618 aa39.63■■■■□ 3.93
CCDC88C-205ENST00000553403 DISP1Q96F81 1524 aa39.62■■■■□ 3.93
CCDC88C-205ENST00000553403 LRRIQ1Q96JM4 1722 aa39.61■■■■□ 3.93
CCDC88C-205ENST00000553403 HECW1Q76N89 1606 aa39.6■■■■□ 3.93
CCDC88C-205ENST00000553403 PHLDB1Q86UU1 1377 aa39.6■■■■□ 3.93
CCDC88C-205ENST00000553403 CCDC18Q5T9S5 1454 aa39.59■■■■□ 3.93
CCDC88C-205ENST00000553403 RIMBP3CA6NJZ7 1639 aa39.56■■■■□ 3.92
CCDC88C-205ENST00000553403 RIMBP3BA6NNM3 1639 aa39.56■■■■□ 3.92
CCDC88C-205ENST00000553403 RIMBP3Q9UFD9 1639 aa39.56■■■■□ 3.92
CCDC88C-205ENST00000553403 MTUS2Q5JR59 1369 aa39.51■■■■□ 3.92
CCDC88C-205ENST00000553403 ARHGEF11O15085 1522 aa39.5■■■■□ 3.91
CCDC88C-205ENST00000553403 EHBP1L1Q8N3D4 1523 aa39.48■■■■□ 3.91
CCDC88C-205ENST00000553403 EPRSP07814 1512 aaKnown RBP39.42■■■■□ 3.9
CCDC88C-205ENST00000553403 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP39.41■■■■□ 3.9
CCDC88C-205ENST00000553403 CARMIL2Q6F5E8 1435 aa39.38■■■■□ 3.89
CCDC88C-205ENST00000553403 SUPT6HQ7KZ85 1726 aaKnown RBP39.37■■■■□ 3.89
CCDC88C-205ENST00000553403 JPH4Q96JJ6 628 aa39.37■■■■□ 3.89
CCDC88C-205ENST00000553403 NCOA2Q15596 1464 aa39.33■■■■□ 3.89
CCDC88C-205ENST00000553403 RAPGEF6Q8TEU7 1601 aa39.32■■■■□ 3.88
CCDC88C-205ENST00000553403 MAGI3Q5TCQ9 1506 aa39.31■■■■□ 3.88
CCDC88C-205ENST00000553403 FGD6Q6ZV73 1430 aa39.3■■■■□ 3.88
CCDC88C-205ENST00000553403 CYB5RLQ6IPT4 315 aa39.29■■■■□ 3.88
CCDC88C-205ENST00000553403 CDK13Q14004 1512 aaKnown RBP39.26■■■■□ 3.88
CCDC88C-205ENST00000553403 CLASP1Q7Z460 1538 aa39.26■■■■□ 3.88
CCDC88C-205ENST00000553403 FAM50AQ14320 339 aaKnown RBP39.25■■■■□ 3.87
CCDC88C-205ENST00000553403 MYOM3Q5VTT5 1437 aa39.23■■■■□ 3.87
CCDC88C-205ENST00000553403 NUP153P49790 1475 aaKnown RBP39.23■■■■□ 3.87
CCDC88C-205ENST00000553403 ITGAEP38570 1179 aa39.21■■■■□ 3.87
CCDC88C-205ENST00000553403 CLSPNQ9HAW4 1339 aa39.17■■■■□ 3.86
CCDC88C-205ENST00000553403 DHX57Q6P158 1386 aaKnown RBP39.15■■■■□ 3.86
CCDC88C-205ENST00000553403 SETD5Q9C0A6 1442 aa39.1■■■■□ 3.85
CCDC88C-205ENST00000553403 PLB1Q6P1J6 1458 aa39.08■■■■□ 3.85
CCDC88C-205ENST00000553403 CDK11AQ9UQ88 783 aaPredicted RBP39.06■■■■□ 3.84
CCDC88C-205ENST00000553403 RAB3GAP2Q9H2M9 1393 aa39.05■■■■□ 3.84
CCDC88C-205ENST00000553403 PRG4Q92954 1404 aaPredicted RBP39.05■■■■□ 3.84
CCDC88C-205ENST00000553403 ABCA8O94911 1581 aa39.04■■■■□ 3.84
CCDC88C-205ENST00000553403 PTPN23Q9H3S7 1636 aa39.03■■■■□ 3.84
CCDC88C-205ENST00000553403 SHROOM2Q13796 1616 aa39.02■■■■□ 3.84
CCDC88C-205ENST00000553403 TCOF1Q13428 1488 aaKnown RBP39.02■■■■□ 3.84
CCDC88C-205ENST00000553403 MIA2Q96PC5 1412 aa39■■■■□ 3.83
CCDC88C-205ENST00000553403 ARID3CA6NKF2 412 aa39■■■■□ 3.83
CCDC88C-205ENST00000553403 TROQ12816 1431 aaPredicted RBP38.94■■■■□ 3.82
CCDC88C-205ENST00000553403 PTPRGP23470 1445 aa38.9■■■■□ 3.82
CCDC88C-205ENST00000553403 PTPRKQ15262 1439 aa38.85■■■■□ 3.81
CCDC88C-205ENST00000553403 ADCY10Q96PN6 1610 aa38.84■■■■□ 3.81
CCDC88C-205ENST00000553403 HFM1A2PYH4 1435 aa38.81■■■■□ 3.8
CCDC88C-205ENST00000553403 ATP10BO94823 1461 aa38.79■■■■□ 3.8
CCDC88C-205ENST00000553403 TRHP20396 242 aaPredicted RBP38.75■■■■□ 3.79
CCDC88C-205ENST00000553403 PLEKHD1A6NEE1 506 aa38.7■■■■□ 3.79
CCDC88C-205ENST00000553403 ITSN2Q9NZM3 1697 aa38.69■■■■□ 3.78
CCDC88C-205ENST00000553403 ERCC6L2Q5T890 1561 aa38.69■■■■□ 3.78
CCDC88C-205ENST00000553403 AKNAQ7Z591 1439 aa38.69■■■■□ 3.78
CCDC88C-205ENST00000553403 UACAQ9BZF9 1416 aa38.69■■■■□ 3.78
CCDC88C-205ENST00000553403 MAPKBP1O60336 1514 aa38.69■■■■□ 3.78
CCDC88C-205ENST00000553403 NAIPQ13075 1403 aa38.68■■■■□ 3.78
CCDC88C-205ENST00000553403 KIF14Q15058 1648 aa38.67■■■■□ 3.78
CCDC88C-205ENST00000553403 GPATCH8Q9UKJ3 1502 aaKnown RBP38.62■■■■□ 3.77
CCDC88C-205ENST00000553403 GCC2Q8IWJ2 1684 aa38.58■■■■□ 3.77
CCDC88C-205ENST00000553403 DNMT1P26358 1616 aaKnown RBP38.58■■■■□ 3.77
CCDC88C-205ENST00000553403 ABCC10Q5T3U5 1492 aa38.56■■■■□ 3.76
CCDC88C-205ENST00000553403 DAPK1P53355 1430 aa38.56■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms