RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 CHMP7Q8WUX9 453 aaPredicted RBP48.2■■■■■ 5.31
CCM2-219ENST00000544363 ARHGAP35Q9NRY4 1499 aa48.11■■■■■ 5.29
CCM2-219ENST00000544363 FBLN2P98095 1184 aa48.08■■■■■ 5.29
CCM2-219ENST00000544363 ARAP1Q96P48 1450 aa48.03■■■■■ 5.28
CCM2-219ENST00000544363 VPS8Q8N3P4 1428 aa47.98■■■■■ 5.27
CCM2-219ENST00000544363 IQGAP2Q13576 1575 aa47.97■■■■■ 5.27
CCM2-219ENST00000544363 KIAA0586Q9BVV6 1533 aa47.97■■■■■ 5.27
CCM2-219ENST00000544363 EFCAB5A4FU69 1503 aa47.95■■■■■ 5.27
CCM2-219ENST00000544363 CEP170Q5SW79 1584 aa47.93■■■■■ 5.26
CCM2-219ENST00000544363 NUP160Q12769 1436 aa47.93■■■■■ 5.26
CCM2-219ENST00000544363 CHD1O14646 1710 aa47.85■■■■■ 5.25
CCM2-219ENST00000544363 SAMD9Q5K651 1589 aa47.82■■■■■ 5.25
CCM2-219ENST00000544363 UGGT2Q9NYU1 1516 aa47.77■■■■■ 5.24
CCM2-219ENST00000544363 P3H3Q8IVL6 736 aa47.76■■■■■ 5.24
CCM2-219ENST00000544363 FHOD3Q2V2M9 1422 aa47.72■■■■■ 5.23
CCM2-219ENST00000544363 JPH4Q96JJ6 628 aa47.55■■■■■ 5.2
CCM2-219ENST00000544363 FMN1Q68DA7 1419 aa47.53■■■■■ 5.2
CCM2-219ENST00000544363 DISP1Q96F81 1524 aa47.53■■■■■ 5.2
CCM2-219ENST00000544363 KIAA0556O60303 1618 aa47.5■■■■■ 5.19
CCM2-219ENST00000544363 APLP2Q06481 763 aa47.48■■■■■ 5.19
CCM2-219ENST00000544363 PPARGC1BQ86YN6 1023 aaKnown RBP47.46■■■■■ 5.19
CCM2-219ENST00000544363 PCF11O94913 1555 aaKnown RBP47.4■■■■■ 5.18
CCM2-219ENST00000544363 CARMIL2Q6F5E8 1435 aa47.38■■■■■ 5.18
CCM2-219ENST00000544363 CASKIN1Q8WXD9 1431 aa47.38■■■■■ 5.18
CCM2-219ENST00000544363 FYCO1Q9BQS8 1478 aa47.35■■■■■ 5.17
CCM2-219ENST00000544363 CLASP1Q7Z460 1538 aa47.34■■■■■ 5.17
CCM2-219ENST00000544363 SHROOM2Q13796 1616 aa47.3■■■■■ 5.16
CCM2-219ENST00000544363 PRG4Q92954 1404 aaPredicted RBP47.26■■■■■ 5.16
CCM2-219ENST00000544363 MAP3K1Q13233 1512 aa47.24■■■■■ 5.15
CCM2-219ENST00000544363 TRIM26Q12899 539 aaPredicted RBP47.22■■■■■ 5.15
CCM2-219ENST00000544363 ATP1B4Q9UN42 357 aaPredicted RBP47.2■■■■■ 5.15
CCM2-219ENST00000544363 TIAM1Q13009 1591 aa47.16■■■■■ 5.14
CCM2-219ENST00000544363 TTBK1Q5TCY1 1321 aaPredicted RBP47.16■■■■■ 5.14
CCM2-219ENST00000544363 KANK4Q5T7N3 995 aaPredicted RBP47.09■■■■■ 5.13
CCM2-219ENST00000544363 OSCARQ8IYS5 282 aa47.09■■■■■ 5.13
CCM2-219ENST00000544363 CFAP43Q8NDM7 1665 aa47.09■■■■■ 5.13
CCM2-219ENST00000544363 HECW1Q76N89 1606 aa47.06■■■■■ 5.12
CCM2-219ENST00000544363 PCGF6Q9BYE7 350 aa47.04■■■■■ 5.12
CCM2-219ENST00000544363 LRRIQ1Q96JM4 1722 aa46.99■■■■■ 5.11
CCM2-219ENST00000544363 RAPGEF6Q8TEU7 1601 aa46.98■■■■■ 5.11
CCM2-219ENST00000544363 LRRC9Q6ZRR7 1453 aa46.96■■■■■ 5.11
CCM2-219ENST00000544363 ERCC6L2Q5T890 1561 aa46.96■■■■■ 5.11
CCM2-219ENST00000544363 CCDC18Q5T9S5 1454 aa46.95■■■■■ 5.11
CCM2-219ENST00000544363 PTPRGP23470 1445 aa46.94■■■■■ 5.1
CCM2-219ENST00000544363 PLB1Q6P1J6 1458 aa46.91■■■■■ 5.1
CCM2-219ENST00000544363 EPRSP07814 1512 aaKnown RBP46.89■■■■■ 5.1
CCM2-219ENST00000544363 NUP153P49790 1475 aaKnown RBP46.86■■■■■ 5.09
CCM2-219ENST00000544363 ABCA8O94911 1581 aa46.85■■■■■ 5.09
CCM2-219ENST00000544363 CDK13Q14004 1512 aaKnown RBP46.77■■■■■ 5.08
CCM2-219ENST00000544363 MTUS2Q5JR59 1369 aa46.72■■■■■ 5.07
CCM2-219ENST00000544363 ARID3CA6NKF2 412 aa46.7■■■■■ 5.07
CCM2-219ENST00000544363 UACAQ9BZF9 1416 aa46.67■■■■■ 5.06
CCM2-219ENST00000544363 EHBP1L1Q8N3D4 1523 aa46.65■■■■■ 5.06
CCM2-219ENST00000544363 MAGI3Q5TCQ9 1506 aa46.63■■■■■ 5.05
CCM2-219ENST00000544363 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP46.56■■■■■ 5.04
CCM2-219ENST00000544363 HNRNPUL2Q1KMD3 747 aaKnown RBP46.56■■■■■ 5.04
CCM2-219ENST00000544363 CDK11AQ9UQ88 783 aaPredicted RBP46.55■■■■■ 5.04
CCM2-219ENST00000544363 ATP10BO94823 1461 aa46.53■■■■■ 5.04
CCM2-219ENST00000544363 ABCC2Q92887 1545 aa46.53■■■■■ 5.04
CCM2-219ENST00000544363 SUPT6HQ7KZ85 1726 aaKnown RBP46.5■■■■■ 5.03
CCM2-219ENST00000544363 PHLDB1Q86UU1 1377 aa46.5■■■■■ 5.03
CCM2-219ENST00000544363 RRBP1Q9P2E9 1410 aaKnown RBP46.48■■■■■ 5.03
CCM2-219ENST00000544363 UHRF1BP1LA0JNW5 1464 aa46.47■■■■■ 5.03
CCM2-219ENST00000544363 NCOA2Q15596 1464 aa46.45■■■■■ 5.03
CCM2-219ENST00000544363 ARHGEF11O15085 1522 aa46.39■■■■■ 5.02
CCM2-219ENST00000544363 TROQ12816 1431 aaPredicted RBP46.38■■■■■ 5.02
CCM2-219ENST00000544363 CCNB3Q8WWL7 1395 aa46.36■■■■■ 5.01
CCM2-219ENST00000544363 PLEKHD1A6NEE1 506 aa46.32■■■■■ 5.01
CCM2-219ENST00000544363 KDM5BQ9UGL1 1544 aa46.26■■■■■ 5
CCM2-219ENST00000544363 MYOM3Q5VTT5 1437 aa46.25■■■■■ 4.99
CCM2-219ENST00000544363 ADCY10Q96PN6 1610 aa46.24■■■■■ 4.99
CCM2-219ENST00000544363 FGD6Q6ZV73 1430 aa46.21■■■■■ 4.99
CCM2-219ENST00000544363 ZCCHC11Q5TAX3 1644 aaKnown RBP46.19■■■■■ 4.98
CCM2-219ENST00000544363 KIF14Q15058 1648 aa46.13■■■■■ 4.98
CCM2-219ENST00000544363 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP46.11■■■■■ 4.974e-9■■■□□ 16.7
CCM2-219ENST00000544363 FAM50AQ14320 339 aaKnown RBP46.07■■■■■ 4.97
CCM2-219ENST00000544363 RIMBP3CA6NJZ7 1639 aa46.07■■■■■ 4.97
CCM2-219ENST00000544363 RIMBP3BA6NNM3 1639 aa46.07■■■■■ 4.97
CCM2-219ENST00000544363 RIMBP3Q9UFD9 1639 aa46.07■■■■■ 4.97
CCM2-219ENST00000544363 MIA2Q96PC5 1412 aa46.04■■■■■ 4.96
CCM2-219ENST00000544363 ABCC10Q5T3U5 1492 aa46■■■■■ 4.96
CCM2-219ENST00000544363 PTPN23Q9H3S7 1636 aa45.99■■■■■ 4.95
CCM2-219ENST00000544363 TCOF1Q13428 1488 aaKnown RBP45.95■■■■■ 4.95
CCM2-219ENST00000544363 GPATCH8Q9UKJ3 1502 aaKnown RBP45.95■■■■■ 4.95
CCM2-219ENST00000544363 ITSN2Q9NZM3 1697 aa45.93■■■■■ 4.94
CCM2-219ENST00000544363 ITGAEP38570 1179 aa45.89■■■■■ 4.94
CCM2-219ENST00000544363 NPM1P06748 294 aaKnown RBP eCLIP45.88■■■■■ 4.94
CCM2-219ENST00000544363 CYB5RLQ6IPT4 315 aa45.85■■■■■ 4.93
CCM2-219ENST00000544363 WDR7Q9Y4E6 1490 aa45.83■■■■■ 4.93
CCM2-219ENST00000544363 CDC42BPAQ5VT25 1732 aa45.83■■■■■ 4.93
CCM2-219ENST00000544363 CFDP1Q9UEE9 299 aaPredicted RBP45.83■■■■■ 4.93
CCM2-219ENST00000544363 KCNH8Q96L42 1107 aa45.82■■■■■ 4.93
CCM2-219ENST00000544363 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP45.81■■■■■ 4.924e-7■■■□□ 18.4
CCM2-219ENST00000544363 ASXL2Q76L83 1435 aa45.77■■■■■ 4.92
CCM2-219ENST00000544363 TTC37Q6PGP7 1564 aa45.76■■■■■ 4.92
CCM2-219ENST00000544363 ZNF644Q9H582 1327 aaPredicted RBP45.69■■■■■ 4.91
CCM2-219ENST00000544363 PREX2Q70Z35 1606 aa45.69■■■■■ 4.9
CCM2-219ENST00000544363 CAMSAP2Q08AD1 1489 aa45.67■■■■■ 4.9
CCM2-219ENST00000544363 CDC42BPBQ9Y5S2 1711 aa45.64■■■■■ 4.9
CCM2-219ENST00000544363 PTPRKQ15262 1439 aa45.64■■■■■ 4.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms