RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 UTP3Q9NQZ2 479 aaKnown RBP eCLIP32.84■■■□□ 2.851e-6■■■■■ 98.5
CCM2-219ENST00000544363 SF3B1O75533 1304 aaKnown RBP eCLIP32.1■■■□□ 2.732e-7■■■■■ 82.1
CCM2-219ENST00000544363 FMR1Q06787 632 aaKnown RBP eCLIP34.72■■■■□ 3.158e-10■■■■■ 77.9
CCM2-219ENST00000544363 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP31.4■■■□□ 2.621e-6■■■■■ 58.1
CCM2-219ENST00000544363 TBRG4Q969Z0 631 aaKnown RBP eCLIP30.32■■■□□ 2.442e-6■■■■■ 54.9
CCM2-219ENST00000544363 CSTF2P33240 577 aaKnown RBP eCLIP28.58■■■□□ 2.173e-8■■■■■ 39.8
CCM2-219ENST00000544363 PTBP1P26599 531 aaKnown RBP eCLIP26.17■■□□□ 1.789e-9■■■■■ 35.7
CCM2-219ENST00000544363 NIPBLQ6KC79 2804 aaeCLIP23■■□□□ 1.271e-6■■■■■ 35.4
CCM2-219ENST00000544363 AQRO60306 1485 aaKnown RBP eCLIP49■■■■■ 5.437e-7■■■■■ 33.7
CCM2-219ENST00000544363 GTF2F1P35269 517 aaKnown RBP eCLIP31.98■■■□□ 2.711e-8■■■■■ 31.2
CCM2-219ENST00000544363 LARP4Q71RC2 724 aaKnown RBP eCLIP29.49■■■□□ 2.319e-6■■■■■ 29.6
CCM2-219ENST00000544363 RBFOX2O43251 390 aaKnown RBP eCLIP24.77■■□□□ 1.565e-6■■■■■ 29.4
CCM2-219ENST00000544363 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP25.81■■□□□ 1.721e-6■■■■□ 24.6
CCM2-219ENST00000544363 PCBP2Q15366 365 aaKnown RBP eCLIP29.77■■■□□ 2.368e-6■■■■□ 24
CCM2-219ENST00000544363 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP27.42■■□□□ 1.981e-8■■■■□ 21.4
CCM2-219ENST00000544363 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP31.89■■■□□ 2.79e-7■■■■□ 19.3
CCM2-219ENST00000544363 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP45.81■■■■■ 4.924e-7■■■□□ 18.4
CCM2-219ENST00000544363 SAFB2Q14151 953 aaKnown RBP eCLIP41.95■■■■■ 4.315e-8■■■□□ 18
CCM2-219ENST00000544363 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP46.11■■■■■ 4.974e-9■■■□□ 16.7
CCM2-219ENST00000544363 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP24.45■■□□□ 1.52e-7■■■□□ 15.8
CCM2-219ENST00000544363 HNRNPMP52272 730 aaKnown RBP eCLIP45.33■■■■■ 4.852e-6■■■□□ 15.7
CCM2-219ENST00000544363 DDX3XO00571 662 aaKnown RBP eCLIP32.62■■■□□ 2.811e-10■■■□□ 15
CCM2-219ENST00000544363 PRPF4O43172 522 aaKnown RBP eCLIP30.44■■■□□ 2.461e-6■■□□□ 13.8
CCM2-219ENST00000544363 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP31.67■■■□□ 2.661e-8■■□□□ 13.3
CCM2-219ENST00000544363 YBX3P16989 372 aaKnown RBP eCLIP35.7■■■■□ 3.312e-6■■□□□ 12.1
CCM2-219ENST00000544363 HNRNPLP14866 589 aaKnown RBP eCLIP30.45■■■□□ 2.471e-7■□□□□ 10.3
CCM2-219ENST00000544363 SLTMQ9NWH9 1034 aaKnown RBP eCLIP31.67■■■□□ 2.667e-6■□□□□ 10.1
Retrieved 27 of 27 RNA–protein pairs in 9.6 ms