RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 PBRM1Q86U86 1689 aa22.92■■□□□ 1.26
CHFR-223ENST00000544268 GRIN2BQ13224 1484 aa22.87■■□□□ 1.25
CHFR-223ENST00000544268 CCER1Q8TC90 406 aaPredicted RBP22.86■■□□□ 1.25
CHFR-223ENST00000544268 EIF4G3O43432 1585 aaKnown RBP22.86■■□□□ 1.25
CHFR-223ENST00000544268 FHAD1B1AJZ9 1412 aa22.81■■□□□ 1.24
CHFR-223ENST00000544268 ADAMTS12P58397 1594 aa22.81■■□□□ 1.24
CHFR-223ENST00000544268 ARAP1Q96P48 1450 aa22.78■■□□□ 1.24
CHFR-223ENST00000544268 VPS8Q8N3P4 1428 aa22.78■■□□□ 1.24
CHFR-223ENST00000544268 ARHGAP35Q9NRY4 1499 aa22.78■■□□□ 1.24
CHFR-223ENST00000544268 CTTNBP2Q8WZ74 1663 aa22.76■■□□□ 1.23
CHFR-223ENST00000544268 SNAPC4Q5SXM2 1469 aa22.76■■□□□ 1.23
CHFR-223ENST00000544268 ACIN1Q9UKV3 1341 aaKnown RBP22.69■■□□□ 1.22
CHFR-223ENST00000544268 MAGI1Q96QZ7 1491 aaPredicted RBP22.67■■□□□ 1.22
CHFR-223ENST00000544268 P3H3Q8IVL6 736 aa22.62■■□□□ 1.21
CHFR-223ENST00000544268 GRIN2AQ12879 1464 aa22.62■■□□□ 1.21
CHFR-223ENST00000544268 SYNJ2O15056 1496 aa22.6■■□□□ 1.21
CHFR-223ENST00000544268 EFCAB5A4FU69 1503 aa22.59■■□□□ 1.21
CHFR-223ENST00000544268 CHMP7Q8WUX9 453 aaPredicted RBP22.58■■□□□ 1.21
CHFR-223ENST00000544268 HNRNPUL2Q1KMD3 747 aaKnown RBP22.58■■□□□ 1.2
CHFR-223ENST00000544268 FHOD3Q2V2M9 1422 aa22.57■■□□□ 1.2
CHFR-223ENST00000544268 FBLN2P98095 1184 aa22.56■■□□□ 1.2
CHFR-223ENST00000544268 APLP2Q06481 763 aa22.55■■□□□ 1.2
CHFR-223ENST00000544268 IQGAP2Q13576 1575 aa22.55■■□□□ 1.2
CHFR-223ENST00000544268 NEUROD1Q13562 356 aa22.53■■□□□ 1.2
CHFR-223ENST00000544268 SAMD9Q5K651 1589 aa22.53■■□□□ 1.2
CHFR-223ENST00000544268 KIAA0586Q9BVV6 1533 aa22.5■■□□□ 1.19
CHFR-223ENST00000544268 CEP170Q5SW79 1584 aa22.49■■□□□ 1.19
CHFR-223ENST00000544268 PCF11O94913 1555 aaKnown RBP22.44■■□□□ 1.18
CHFR-223ENST00000544268 GTF3C3Q9Y5Q9 886 aa22.44■■□□□ 1.18
CHFR-223ENST00000544268 NUP160Q12769 1436 aa22.43■■□□□ 1.18
CHFR-223ENST00000544268 UGGT2Q9NYU1 1516 aa22.43■■□□□ 1.18
CHFR-223ENST00000544268 KANK4Q5T7N3 995 aaPredicted RBP22.41■■□□□ 1.18
CHFR-223ENST00000544268 FMN1Q68DA7 1419 aa22.41■■□□□ 1.18
CHFR-223ENST00000544268 CENPBP07199 599 aaPredicted RBP22.39■■□□□ 1.17
CHFR-223ENST00000544268 CASKIN1Q8WXD9 1431 aa22.38■■□□□ 1.17
CHFR-223ENST00000544268 ATP1B4Q9UN42 357 aaPredicted RBP22.38■■□□□ 1.17
CHFR-223ENST00000544268 FYCO1Q9BQS8 1478 aa22.37■■□□□ 1.17
CHFR-223ENST00000544268 CHD1O14646 1710 aa22.36■■□□□ 1.17
CHFR-223ENST00000544268 DISP1Q96F81 1524 aa22.35■■□□□ 1.17
CHFR-223ENST00000544268 TIAM1Q13009 1591 aa22.35■■□□□ 1.17
CHFR-223ENST00000544268 PRKCSHP14314 528 aaPredicted RBP22.35■■□□□ 1.17
CHFR-223ENST00000544268 MAP3K1Q13233 1512 aa22.33■■□□□ 1.17
CHFR-223ENST00000544268 DIEXFQ68CQ4 756 aaKnown RBP22.33■■□□□ 1.17
CHFR-223ENST00000544268 KIAA0556O60303 1618 aa22.33■■□□□ 1.16
CHFR-223ENST00000544268 JPH4Q96JJ6 628 aa22.3■■□□□ 1.16
CHFR-223ENST00000544268 CFAP43Q8NDM7 1665 aa22.28■■□□□ 1.16
CHFR-223ENST00000544268 LRRC9Q6ZRR7 1453 aa22.26■■□□□ 1.15
CHFR-223ENST00000544268 LRRIQ1Q96JM4 1722 aa22.24■■□□□ 1.15
CHFR-223ENST00000544268 CARMIL2Q6F5E8 1435 aa22.2■■□□□ 1.15
CHFR-223ENST00000544268 HECW1Q76N89 1606 aa22.17■■□□□ 1.14
CHFR-223ENST00000544268 PRG4Q92954 1404 aaPredicted RBP22.15■■□□□ 1.14
CHFR-223ENST00000544268 ZNF316A6NFI3 1004 aaPredicted RBP22.14■■□□□ 1.13
CHFR-223ENST00000544268 EPRSP07814 1512 aaKnown RBP22.12■■□□□ 1.13
CHFR-223ENST00000544268 CCDC18Q5T9S5 1454 aa22.12■■□□□ 1.13
CHFR-223ENST00000544268 ARID3CA6NKF2 412 aa22.11■■□□□ 1.13
CHFR-223ENST00000544268 SHROOM2Q13796 1616 aa22.11■■□□□ 1.13
CHFR-223ENST00000544268 RAPGEF6Q8TEU7 1601 aa22.11■■□□□ 1.13
CHFR-223ENST00000544268 MTUS2Q5JR59 1369 aa22.1■■□□□ 1.13
CHFR-223ENST00000544268 CDK13Q14004 1512 aaKnown RBP22.1■■□□□ 1.13
CHFR-223ENST00000544268 RRBP1Q9P2E9 1410 aaKnown RBP22.1■■□□□ 1.13
CHFR-223ENST00000544268 PLB1Q6P1J6 1458 aa22.09■■□□□ 1.13
CHFR-223ENST00000544268 PHLDB1Q86UU1 1377 aa22.09■■□□□ 1.13
CHFR-223ENST00000544268 CLASP1Q7Z460 1538 aa22.09■■□□□ 1.13
CHFR-223ENST00000544268 BCL11AQ9H165 835 aa22.09■■□□□ 1.13
CHFR-223ENST00000544268 NUP153P49790 1475 aaKnown RBP22.08■■□□□ 1.13
CHFR-223ENST00000544268 ITGAEP38570 1179 aa22.07■■□□□ 1.12
CHFR-223ENST00000544268 MAGI3Q5TCQ9 1506 aa22.06■■□□□ 1.12
CHFR-223ENST00000544268 CCNB3Q8WWL7 1395 aa22.04■■□□□ 1.12
CHFR-223ENST00000544268 ERCC6L2Q5T890 1561 aa22.03■■□□□ 1.12
CHFR-223ENST00000544268 EHBP1L1Q8N3D4 1523 aa22.03■■□□□ 1.12
CHFR-223ENST00000544268 PTPRGP23470 1445 aa22.01■■□□□ 1.11
CHFR-223ENST00000544268 ABCA8O94911 1581 aa22■■□□□ 1.11
CHFR-223ENST00000544268 NCOA2Q15596 1464 aa21.98■■□□□ 1.11
CHFR-223ENST00000544268 DHX57Q6P158 1386 aaKnown RBP21.98■■□□□ 1.11
CHFR-223ENST00000544268 SUPT6HQ7KZ85 1726 aaKnown RBP21.98■■□□□ 1.11
CHFR-223ENST00000544268 YTHDC1Q96MU7 727 aaKnown RBP21.96■■□□□ 1.11
CHFR-223ENST00000544268 MIER1Q8N108 512 aa21.96■■□□□ 1.11
CHFR-223ENST00000544268 ARHGEF11O15085 1522 aa21.92■■□□□ 1.1
CHFR-223ENST00000544268 FAM50AQ14320 339 aaKnown RBP21.91■■□□□ 1.1
CHFR-223ENST00000544268 FGD6Q6ZV73 1430 aa21.9■■□□□ 1.1
CHFR-223ENST00000544268 CDK11AQ9UQ88 783 aaPredicted RBP21.9■■□□□ 1.1
CHFR-223ENST00000544268 OSCARQ8IYS5 282 aa21.89■■□□□ 1.09
CHFR-223ENST00000544268 MYOM3Q5VTT5 1437 aa21.88■■□□□ 1.09
CHFR-223ENST00000544268 ATP10BO94823 1461 aa21.88■■□□□ 1.09
CHFR-223ENST00000544268 UACAQ9BZF9 1416 aa21.87■■□□□ 1.09
CHFR-223ENST00000544268 TROQ12816 1431 aaPredicted RBP21.85■■□□□ 1.09
CHFR-223ENST00000544268 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.82■■□□□ 1.08
CHFR-223ENST00000544268 ABCC2Q92887 1545 aa21.8■■□□□ 1.08
CHFR-223ENST00000544268 PLEKHD1A6NEE1 506 aa21.78■■□□□ 1.08
CHFR-223ENST00000544268 KIF14Q15058 1648 aa21.78■■□□□ 1.08
CHFR-223ENST00000544268 PTPN23Q9H3S7 1636 aa21.78■■□□□ 1.08
CHFR-223ENST00000544268 ERICH6Q7L0X2 663 aa21.77■■□□□ 1.08
CHFR-223ENST00000544268 ADCY10Q96PN6 1610 aa21.76■■□□□ 1.07
CHFR-223ENST00000544268 RAB3GAP2Q9H2M9 1393 aa21.75■■□□□ 1.07
CHFR-223ENST00000544268 MIA2Q96PC5 1412 aa21.73■■□□□ 1.07
CHFR-223ENST00000544268 TCOF1Q13428 1488 aaKnown RBP21.72■■□□□ 1.07
CHFR-223ENST00000544268 UHRF1BP1LA0JNW5 1464 aa21.72■■□□□ 1.07
CHFR-223ENST00000544268 CLSPNQ9HAW4 1339 aa21.7■■□□□ 1.07
CHFR-223ENST00000544268 PTPRKQ15262 1439 aa21.69■■□□□ 1.06
CHFR-223ENST00000544268 GPATCH8Q9UKJ3 1502 aaKnown RBP21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 128.7 ms