RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 NISCHQ9Y2I1 1504 aa32.9■■■□□ 2.86
CHFR-223ENST00000544268 CCDC180Q9P1Z9 1646 aa28.62■■■□□ 2.17
CHFR-223ENST00000544268 ZCCHC6Q5VYS8 1495 aaKnown RBP27.63■■■□□ 2.01
CHFR-223ENST00000544268 DCAF8L2P0C7V8 631 aa27.27■■□□□ 1.96
CHFR-223ENST00000544268 ABCC9O60706 1549 aa27.19■■□□□ 1.94
CHFR-223ENST00000544268 DCAF1Q9Y4B6 1507 aa27.14■■□□□ 1.94
CHFR-223ENST00000544268 SHROOM4Q9ULL8 1493 aa26.96■■□□□ 1.91
CHFR-223ENST00000544268 MYO15BQ96JP2 1530 aa26.8■■□□□ 1.88
CHFR-223ENST00000544268 NACADO15069 1562 aa26.67■■□□□ 1.86
CHFR-223ENST00000544268 RB1CC1Q8TDY2 1594 aa26.46■■□□□ 1.83
CHFR-223ENST00000544268 SCRIBQ14160 1630 aa26.42■■□□□ 1.82
CHFR-223ENST00000544268 SUPT5HO00267 1087 aaKnown RBP26.08■■□□□ 1.77
CHFR-223ENST00000544268 UNC13AQ9UPW8 1703 aa25.98■■□□□ 1.75
CHFR-223ENST00000544268 BICRAQ9NZM4 1560 aa25.71■■□□□ 1.71
CHFR-223ENST00000544268 PABPN1Q86U42 306 aaKnown RBP eCLIP25.67■■□□□ 1.7
CHFR-223ENST00000544268 CECR2Q9BXF3 1484 aa25.62■■□□□ 1.69
CHFR-223ENST00000544268 RSF1Q96T23 1441 aaPredicted RBP25.55■■□□□ 1.68
CHFR-223ENST00000544268 MROH2BQ7Z745 1585 aa25.46■■□□□ 1.67
CHFR-223ENST00000544268 BAZ1AQ9NRL2 1556 aaPredicted RBP25.38■■□□□ 1.65
CHFR-223ENST00000544268 SMARCA4P51532 1647 aa25.29■■□□□ 1.64
CHFR-223ENST00000544268 WIZO95785 1651 aa25.25■■□□□ 1.63
CHFR-223ENST00000544268 CHIC1Q5VXU3 224 aa25.2■■□□□ 1.62
CHFR-223ENST00000544268 PEG3Q9GZU2 1588 aa24.95■■□□□ 1.58
CHFR-223ENST00000544268 TOP2AP11388 1531 aaKnown RBP24.94■■□□□ 1.58
CHFR-223ENST00000544268 EIF4G1Q04637 1599 aaKnown RBP24.92■■□□□ 1.58
CHFR-223ENST00000544268 ATAD2BQ9ULI0 1458 aa24.88■■□□□ 1.57
CHFR-223ENST00000544268 SMARCA2P51531 1590 aa24.83■■□□□ 1.57
CHFR-223ENST00000544268 BAZ1BQ9UIG0 1483 aaKnown RBP24.74■■□□□ 1.55
CHFR-223ENST00000544268 CCDC88BA6NC98 1476 aa24.72■■□□□ 1.55
CHFR-223ENST00000544268 NCAPD3P42695 1498 aa24.64■■□□□ 1.54
CHFR-223ENST00000544268 LOC105371045A0A1W2PR82 267 aa24.61■■□□□ 1.53
CHFR-223ENST00000544268 HMGXB3Q12766 1538 aa24.59■■□□□ 1.53
CHFR-223ENST00000544268 CC2D2AQ9P2K1 1620 aa24.57■■□□□ 1.52
CHFR-223ENST00000544268 HRCP23327 699 aa24.52■■□□□ 1.52
CHFR-223ENST00000544268 PCGF6Q9BYE7 350 aa24.4■■□□□ 1.5
CHFR-223ENST00000544268 PELP1Q8IZL8 1130 aaKnown RBP24.39■■□□□ 1.49
CHFR-223ENST00000544268 TRIM41Q8WV44 630 aa24.32■■□□□ 1.48
CHFR-223ENST00000544268 ABCC8Q09428 1581 aa24.24■■□□□ 1.47
CHFR-223ENST00000544268 FAM9AQ8IZU1 332 aaPredicted RBP24.16■■□□□ 1.46
CHFR-223ENST00000544268 EHMT2Q96KQ7 1210 aa24.12■■□□□ 1.45
CHFR-223ENST00000544268 CFTRP13569 1480 aa24.11■■□□□ 1.45
CHFR-223ENST00000544268 DNAJC5BQ9UF47 199 aa24.11■■□□□ 1.45
CHFR-223ENST00000544268 WRNQ14191 1432 aaPredicted RBP eCLIP24.04■■□□□ 1.44
CHFR-223ENST00000544268 CADPSQ9ULU8 1353 aa24.04■■□□□ 1.44
CHFR-223ENST00000544268 PPARGC1BQ86YN6 1023 aaKnown RBP23.98■■□□□ 1.43
CHFR-223ENST00000544268 SYNJ1O43426 1573 aa23.95■■□□□ 1.43
CHFR-223ENST00000544268 PRDM2Q13029 1718 aa23.95■■□□□ 1.42
CHFR-223ENST00000544268 NESP48681 1621 aa23.88■■□□□ 1.41
CHFR-223ENST00000544268 MYT1Q01538 1121 aa23.86■■□□□ 1.41
CHFR-223ENST00000544268 TOP2BQ02880 1626 aa23.82■■□□□ 1.4
CHFR-223ENST00000544268 CUX1P39880 1505 aa23.79■■□□□ 1.4
CHFR-223ENST00000544268 LAMC3Q9Y6N6 1575 aa23.79■■□□□ 1.4
CHFR-223ENST00000544268 SOGA1O94964 1423 aa23.78■■□□□ 1.4
CHFR-223ENST00000544268 BIVM-ERCC5R4GMW8 1640 aa23.78■■□□□ 1.4
CHFR-223ENST00000544268 FANCD2Q9BXW9 1451 aa23.78■■□□□ 1.4
CHFR-223ENST00000544268 TRIM26Q12899 539 aaPredicted RBP23.77■■□□□ 1.4
CHFR-223ENST00000544268 RUSC2Q8N2Y8 1516 aa23.71■■□□□ 1.39
CHFR-223ENST00000544268 EEA1Q15075 1411 aa23.63■■□□□ 1.37
CHFR-223ENST00000544268 PDS5BQ9NTI5 1447 aa23.62■■□□□ 1.37
CHFR-223ENST00000544268 CEP164Q9UPV0 1460 aa23.61■■□□□ 1.37
CHFR-223ENST00000544268 CSRNP3Q8WYN3 585 aa23.58■■□□□ 1.36
CHFR-223ENST00000544268 KIF21AQ7Z4S6 1674 aa23.55■■□□□ 1.36
CHFR-223ENST00000544268 DNMBPQ6XZF7 1577 aa23.54■■□□□ 1.36
CHFR-223ENST00000544268 FGD5Q6ZNL6 1462 aa23.53■■□□□ 1.36
CHFR-223ENST00000544268 TOPBP1Q92547 1522 aa23.52■■□□□ 1.36
CHFR-223ENST00000544268 URB2Q14146 1524 aaKnown RBP23.5■■□□□ 1.35
CHFR-223ENST00000544268 POLA1P09884 1462 aaPredicted RBP23.42■■□□□ 1.34
CHFR-223ENST00000544268 KIF27Q86VH2 1401 aa23.41■■□□□ 1.34
CHFR-223ENST00000544268 CUX2O14529 1486 aa23.38■■□□□ 1.33
CHFR-223ENST00000544268 RAD54L2Q9Y4B4 1467 aa23.37■■□□□ 1.33
CHFR-223ENST00000544268 KIF21BO75037 1637 aa23.35■■□□□ 1.33
CHFR-223ENST00000544268 GOLGA3Q08378 1498 aa23.35■■□□□ 1.33
CHFR-223ENST00000544268 MRC2Q9UBG0 1479 aa23.32■■□□□ 1.32
CHFR-223ENST00000544268 UBTFP17480 764 aaKnown RBP23.3■■□□□ 1.32
CHFR-223ENST00000544268 ABCA10Q8WWZ4 1543 aa23.29■■□□□ 1.32
CHFR-223ENST00000544268 RAPGEF2Q9Y4G8 1499 aa23.29■■□□□ 1.32
CHFR-223ENST00000544268 TNIKQ9UKE5 1360 aa23.28■■□□□ 1.32
CHFR-223ENST00000544268 ERCC6Q03468 1493 aa23.28■■□□□ 1.32
CHFR-223ENST00000544268 TTBK1Q5TCY1 1321 aaPredicted RBP23.27■■□□□ 1.32
CHFR-223ENST00000544268 PRXQ9BXM0 1461 aa23.27■■□□□ 1.32
CHFR-223ENST00000544268 SCAF1Q9H7N4 1312 aaKnown RBP23.26■■□□□ 1.31
CHFR-223ENST00000544268 IGF1RP08069 1367 aa23.24■■□□□ 1.31
CHFR-223ENST00000544268 WDR97A6NE52 1622 aa23.21■■□□□ 1.31
CHFR-223ENST00000544268 WDR62O43379 1518 aa23.2■■□□□ 1.3
CHFR-223ENST00000544268 ERICH3Q5RHP9 1530 aa23.19■■□□□ 1.3
CHFR-223ENST00000544268 CEP162Q5TB80 1403 aa23.19■■□□□ 1.3
CHFR-223ENST00000544268 TARBP1Q13395 1621 aaKnown RBP23.16■■□□□ 1.3
CHFR-223ENST00000544268 TDRD9Q8NDG6 1382 aaKnown RBP23.15■■□□□ 1.3
CHFR-223ENST00000544268 THOC2Q8NI27 1593 aaKnown RBP23.14■■□□□ 1.3
CHFR-223ENST00000544268 CARMIL1Q5VZK9 1371 aa23.11■■□□□ 1.29
CHFR-223ENST00000544268 ABCA5Q8WWZ7 1642 aa23.11■■□□□ 1.29
CHFR-223ENST00000544268 GAPVD1Q14C86 1478 aa23.07■■□□□ 1.28
CHFR-223ENST00000544268 ZEB1P37275 1124 aaPredicted RBP23.07■■□□□ 1.28
CHFR-223ENST00000544268 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.06■■□□□ 1.28
CHFR-223ENST00000544268 IFT140Q96RY7 1462 aa23.03■■□□□ 1.28
CHFR-223ENST00000544268 CLIP1P30622 1438 aa23■■□□□ 1.27
CHFR-223ENST00000544268 AQRO60306 1485 aaKnown RBP eCLIP23■■□□□ 1.273e-10■■■■■ 62.8
CHFR-223ENST00000544268 CUL7Q14999 1698 aa23■■□□□ 1.27
CHFR-223ENST00000544268 RANGAP1P46060 587 aaPredicted RBP22.99■■□□□ 1.27
CHFR-223ENST00000544268 ZNF608Q9ULD9 1512 aaPredicted RBP22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms