RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 ERCC6Q03468 1493 aa14.79□□□□□ -0.04
CLIP1-212ENST00000540304 IFT140Q96RY7 1462 aa14.78□□□□□ -0.04
CLIP1-212ENST00000540304 THOC2Q8NI27 1593 aaKnown RBP14.76□□□□□ -0.05
CLIP1-212ENST00000540304 EFCAB5A4FU69 1503 aa14.75□□□□□ -0.05
CLIP1-212ENST00000540304 AQRO60306 1485 aaKnown RBP eCLIP14.73□□□□□ -0.05
CLIP1-212ENST00000540304 ADAMTS12P58397 1594 aa14.72□□□□□ -0.05
CLIP1-212ENST00000540304 GRIN2BQ13224 1484 aa14.72□□□□□ -0.05
CLIP1-212ENST00000540304 ZEB1P37275 1124 aaPredicted RBP14.71□□□□□ -0.05
CLIP1-212ENST00000540304 SENP3Q9H4L4 574 aaPredicted RBP14.71□□□□□ -0.05
CLIP1-212ENST00000540304 FHAD1B1AJZ9 1412 aa14.71□□□□□ -0.05
CLIP1-212ENST00000540304 ZNF608Q9ULD9 1512 aaPredicted RBP14.69□□□□□ -0.06
CLIP1-212ENST00000540304 MAP3K1Q13233 1512 aa14.68□□□□□ -0.06
CLIP1-212ENST00000540304 EIF4G3O43432 1585 aaKnown RBP14.67□□□□□ -0.06
CLIP1-212ENST00000540304 SAMD9Q5K651 1589 aa14.67□□□□□ -0.06
CLIP1-212ENST00000540304 PCF11O94913 1555 aaKnown RBP14.66□□□□□ -0.06
CLIP1-212ENST00000540304 TIAM1Q13009 1591 aa14.66□□□□□ -0.06
CLIP1-212ENST00000540304 FHOD3Q2V2M9 1422 aa14.66□□□□□ -0.06
CLIP1-212ENST00000540304 KANK4Q5T7N3 995 aaPredicted RBP14.65□□□□□ -0.06
CLIP1-212ENST00000540304 CFAP43Q8NDM7 1665 aa14.64□□□□□ -0.07
CLIP1-212ENST00000540304 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.63□□□□□ -0.07
CLIP1-212ENST00000540304 P3H3Q8IVL6 736 aa14.63□□□□□ -0.07
CLIP1-212ENST00000540304 FYCO1Q9BQS8 1478 aa14.63□□□□□ -0.07
CLIP1-212ENST00000540304 FMN1Q68DA7 1419 aa14.61□□□□□ -0.07
CLIP1-212ENST00000540304 IQGAP2Q13576 1575 aa14.61□□□□□ -0.07
CLIP1-212ENST00000540304 SNAPC4Q5SXM2 1469 aa14.6□□□□□ -0.07
CLIP1-212ENST00000540304 CASKIN1Q8WXD9 1431 aa14.6□□□□□ -0.07
CLIP1-212ENST00000540304 BCL11AQ9H165 835 aa14.58□□□□□ -0.08
CLIP1-212ENST00000540304 LRRC9Q6ZRR7 1453 aa14.58□□□□□ -0.08
CLIP1-212ENST00000540304 SCAF1Q9H7N4 1312 aaKnown RBP14.57□□□□□ -0.08
CLIP1-212ENST00000540304 MAGI1Q96QZ7 1491 aaPredicted RBP14.57□□□□□ -0.08
CLIP1-212ENST00000540304 CCER1Q8TC90 406 aaPredicted RBP14.57□□□□□ -0.08
CLIP1-212ENST00000540304 RRBP1Q9P2E9 1410 aaKnown RBP14.57□□□□□ -0.08
CLIP1-212ENST00000540304 SLC24A1O60721 1099 aa14.56□□□□□ -0.08
CLIP1-212ENST00000540304 GRIN2AQ12879 1464 aa14.55□□□□□ -0.08
CLIP1-212ENST00000540304 HNRNPUL2Q1KMD3 747 aaKnown RBP14.55□□□□□ -0.08
CLIP1-212ENST00000540304 UGGT2Q9NYU1 1516 aa14.53□□□□□ -0.08
CLIP1-212ENST00000540304 KIAA0586Q9BVV6 1533 aa14.52□□□□□ -0.09
CLIP1-212ENST00000540304 SYNJ2O15056 1496 aa14.51□□□□□ -0.09
CLIP1-212ENST00000540304 ATP1B4Q9UN42 357 aaPredicted RBP14.51□□□□□ -0.09
CLIP1-212ENST00000540304 CCNB3Q8WWL7 1395 aa14.5□□□□□ -0.09
CLIP1-212ENST00000540304 LRRIQ1Q96JM4 1722 aa14.5□□□□□ -0.09
CLIP1-212ENST00000540304 ERICH6Q7L0X2 663 aa14.49□□□□□ -0.09
CLIP1-212ENST00000540304 CEP170Q5SW79 1584 aa14.46□□□□□ -0.09
CLIP1-212ENST00000540304 KIAA0556O60303 1618 aa14.46□□□□□ -0.1
CLIP1-212ENST00000540304 CHMP7Q8WUX9 453 aaPredicted RBP14.45□□□□□ -0.1
CLIP1-212ENST00000540304 HECW1Q76N89 1606 aa14.45□□□□□ -0.1
CLIP1-212ENST00000540304 PHLDB1Q86UU1 1377 aa14.45□□□□□ -0.1
CLIP1-212ENST00000540304 PHF23Q9BUL5 403 aaPredicted RBP14.44□□□□□ -0.1
CLIP1-212ENST00000540304 CCDC18Q5T9S5 1454 aa14.44□□□□□ -0.1
CLIP1-212ENST00000540304 DISP1Q96F81 1524 aa14.43□□□□□ -0.1
CLIP1-212ENST00000540304 NUP160Q12769 1436 aa14.42□□□□□ -0.1
CLIP1-212ENST00000540304 MTUS2Q5JR59 1369 aa14.41□□□□□ -0.1
CLIP1-212ENST00000540304 EHBP1L1Q8N3D4 1523 aa14.41□□□□□ -0.1
CLIP1-212ENST00000540304 FBLN2P98095 1184 aa14.39□□□□□ -0.11
CLIP1-212ENST00000540304 SUPT6HQ7KZ85 1726 aaKnown RBP14.39□□□□□ -0.11
CLIP1-212ENST00000540304 EPRSP07814 1512 aaKnown RBP14.37□□□□□ -0.11
CLIP1-212ENST00000540304 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.36□□□□□ -0.11
CLIP1-212ENST00000540304 NCOA2Q15596 1464 aa14.35□□□□□ -0.11
CLIP1-212ENST00000540304 MAGI3Q5TCQ9 1506 aa14.35□□□□□ -0.11
CLIP1-212ENST00000540304 RAPGEF6Q8TEU7 1601 aa14.35□□□□□ -0.11
CLIP1-212ENST00000540304 FGD6Q6ZV73 1430 aa14.34□□□□□ -0.11
CLIP1-212ENST00000540304 ITGAEP38570 1179 aa14.33□□□□□ -0.11
CLIP1-212ENST00000540304 FAM50AQ14320 339 aaKnown RBP14.33□□□□□ -0.12
CLIP1-212ENST00000540304 ARHGEF11O15085 1522 aa14.33□□□□□ -0.12
CLIP1-212ENST00000540304 CDK13Q14004 1512 aaKnown RBP14.33□□□□□ -0.12
CLIP1-212ENST00000540304 CARMIL2Q6F5E8 1435 aa14.33□□□□□ -0.12
CLIP1-212ENST00000540304 CHD1O14646 1710 aa14.32□□□□□ -0.12
CLIP1-212ENST00000540304 MYOM3Q5VTT5 1437 aa14.31□□□□□ -0.12
CLIP1-212ENST00000540304 JPH4Q96JJ6 628 aa14.31□□□□□ -0.12
CLIP1-212ENST00000540304 NUP153P49790 1475 aaKnown RBP14.3□□□□□ -0.12
CLIP1-212ENST00000540304 DHX57Q6P158 1386 aaKnown RBP14.3□□□□□ -0.12
CLIP1-212ENST00000540304 CLSPNQ9HAW4 1339 aa14.29□□□□□ -0.12
CLIP1-212ENST00000540304 SETD5Q9C0A6 1442 aa14.27□□□□□ -0.13
CLIP1-212ENST00000540304 RAB3GAP2Q9H2M9 1393 aa14.27□□□□□ -0.13
CLIP1-212ENST00000540304 PTPN23Q9H3S7 1636 aa14.26□□□□□ -0.13
CLIP1-212ENST00000540304 PLB1Q6P1J6 1458 aa14.25□□□□□ -0.13
CLIP1-212ENST00000540304 ARID3CA6NKF2 412 aa14.24□□□□□ -0.13
CLIP1-212ENST00000540304 TCOF1Q13428 1488 aaKnown RBP14.23□□□□□ -0.13
CLIP1-212ENST00000540304 ABCA8O94911 1581 aa14.22□□□□□ -0.13
CLIP1-212ENST00000540304 SHROOM2Q13796 1616 aa14.22□□□□□ -0.13
CLIP1-212ENST00000540304 CDK11AQ9UQ88 783 aaPredicted RBP14.21□□□□□ -0.13
CLIP1-212ENST00000540304 PRG4Q92954 1404 aaPredicted RBP14.21□□□□□ -0.14
CLIP1-212ENST00000540304 MIA2Q96PC5 1412 aa14.21□□□□□ -0.14
CLIP1-212ENST00000540304 TROQ12816 1431 aaPredicted RBP14.18□□□□□ -0.14
CLIP1-212ENST00000540304 ADCY10Q96PN6 1610 aa14.18□□□□□ -0.14
CLIP1-212ENST00000540304 PTPRKQ15262 1439 aa14.18□□□□□ -0.14
CLIP1-212ENST00000540304 HFM1A2PYH4 1435 aa14.16□□□□□ -0.14
CLIP1-212ENST00000540304 MAPKBP1O60336 1514 aa14.15□□□□□ -0.14
CLIP1-212ENST00000540304 PTPRGP23470 1445 aa14.15□□□□□ -0.14
CLIP1-212ENST00000540304 ITSN2Q9NZM3 1697 aa14.15□□□□□ -0.15
CLIP1-212ENST00000540304 CLASP1Q7Z460 1538 aa14.13□□□□□ -0.15
CLIP1-212ENST00000540304 KIF14Q15058 1648 aa14.13□□□□□ -0.15
CLIP1-212ENST00000540304 ATP10BO94823 1461 aa14.12□□□□□ -0.15
CLIP1-212ENST00000540304 GCC2Q8IWJ2 1684 aa14.12□□□□□ -0.15
CLIP1-212ENST00000540304 NAIPQ13075 1403 aa14.11□□□□□ -0.15
CLIP1-212ENST00000540304 AKNAQ7Z591 1439 aa14.11□□□□□ -0.15
CLIP1-212ENST00000540304 DNMT1P26358 1616 aaKnown RBP14.09□□□□□ -0.15
CLIP1-212ENST00000540304 ERCC6L2Q5T890 1561 aa14.08□□□□□ -0.16
CLIP1-212ENST00000540304 UACAQ9BZF9 1416 aa14.08□□□□□ -0.16
CLIP1-212ENST00000540304 PLEKHD1A6NEE1 506 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms