RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 NISCHQ9Y2I1 1504 aa21.3■■□□□ 1
CLIP1-212ENST00000540304 CCDC180Q9P1Z9 1646 aa18.5■□□□□ 0.55
CLIP1-212ENST00000540304 ZCCHC6Q5VYS8 1495 aaKnown RBP17.95■□□□□ 0.46
CLIP1-212ENST00000540304 DCAF1Q9Y4B6 1507 aa17.61■□□□□ 0.41
CLIP1-212ENST00000540304 SHROOM4Q9ULL8 1493 aa17.54■□□□□ 0.4
CLIP1-212ENST00000540304 DCAF8L2P0C7V8 631 aa17.51■□□□□ 0.39
CLIP1-212ENST00000540304 MYO15BQ96JP2 1530 aa17.32■□□□□ 0.36
CLIP1-212ENST00000540304 ABCC9O60706 1549 aa17.28■□□□□ 0.36
CLIP1-212ENST00000540304 NACADO15069 1562 aa17.16■□□□□ 0.34
CLIP1-212ENST00000540304 AEBP2Q6ZN18 517 aaPredicted RBP17.12■□□□□ 0.33
CLIP1-212ENST00000540304 SCRIBQ14160 1630 aa17.04■□□□□ 0.32
CLIP1-212ENST00000540304 SUPT5HO00267 1087 aaKnown RBP16.97■□□□□ 0.31
CLIP1-212ENST00000540304 RB1CC1Q8TDY2 1594 aa16.96■□□□□ 0.31
CLIP1-212ENST00000540304 UNC13AQ9UPW8 1703 aa16.67■□□□□ 0.26
CLIP1-212ENST00000540304 RSF1Q96T23 1441 aaPredicted RBP16.6■□□□□ 0.25
CLIP1-212ENST00000540304 CECR2Q9BXF3 1484 aa16.53■□□□□ 0.24
CLIP1-212ENST00000540304 MROH2BQ7Z745 1585 aa16.47■□□□□ 0.23
CLIP1-212ENST00000540304 BICRAQ9NZM4 1560 aa16.45■□□□□ 0.22
CLIP1-212ENST00000540304 BAZ1AQ9NRL2 1556 aaPredicted RBP16.44■□□□□ 0.22
CLIP1-212ENST00000540304 WIZO95785 1651 aa16.37■□□□□ 0.21
CLIP1-212ENST00000540304 CHIC1Q5VXU3 224 aa16.35■□□□□ 0.21
CLIP1-212ENST00000540304 SMARCA4P51532 1647 aa16.34■□□□□ 0.21
CLIP1-212ENST00000540304 PABPN1Q86U42 306 aaKnown RBP eCLIP16.33■□□□□ 0.2
CLIP1-212ENST00000540304 TOP2AP11388 1531 aaKnown RBP16.19■□□□□ 0.18
CLIP1-212ENST00000540304 PEG3Q9GZU2 1588 aa16.13■□□□□ 0.17
CLIP1-212ENST00000540304 SMARCA2P51531 1590 aa16.05■□□□□ 0.16
CLIP1-212ENST00000540304 EIF4G1Q04637 1599 aaKnown RBP16.02■□□□□ 0.16
CLIP1-212ENST00000540304 CCDC88BA6NC98 1476 aa16.02■□□□□ 0.16
CLIP1-212ENST00000540304 ATAD2BQ9ULI0 1458 aa16■□□□□ 0.15
CLIP1-212ENST00000540304 TRIM41Q8WV44 630 aa15.94■□□□□ 0.14
CLIP1-212ENST00000540304 BAZ1BQ9UIG0 1483 aaKnown RBP15.93■□□□□ 0.14
CLIP1-212ENST00000540304 PELP1Q8IZL8 1130 aaKnown RBP15.85■□□□□ 0.13
CLIP1-212ENST00000540304 HMGXB3Q12766 1538 aa15.83■□□□□ 0.13
CLIP1-212ENST00000540304 NCAPD3P42695 1498 aa15.82■□□□□ 0.12
CLIP1-212ENST00000540304 ABCC8Q09428 1581 aa15.77■□□□□ 0.12
CLIP1-212ENST00000540304 LOC105371045A0A1W2PR82 267 aa15.75■□□□□ 0.11
CLIP1-212ENST00000540304 FAM9AQ8IZU1 332 aaPredicted RBP15.68■□□□□ 0.1
CLIP1-212ENST00000540304 CC2D2AQ9P2K1 1620 aa15.65■□□□□ 0.1
CLIP1-212ENST00000540304 EHMT2Q96KQ7 1210 aa15.63■□□□□ 0.09
CLIP1-212ENST00000540304 WRNQ14191 1432 aaPredicted RBP eCLIP15.63■□□□□ 0.09
CLIP1-212ENST00000540304 SYNJ1O43426 1573 aa15.57■□□□□ 0.08
CLIP1-212ENST00000540304 MYT1Q01538 1121 aa15.57■□□□□ 0.08
CLIP1-212ENST00000540304 CFTRP13569 1480 aa15.54■□□□□ 0.08
CLIP1-212ENST00000540304 PRDM2Q13029 1718 aa15.52■□□□□ 0.08
CLIP1-212ENST00000540304 EEA1Q15075 1411 aa15.52■□□□□ 0.07
CLIP1-212ENST00000540304 SOGA1O94964 1423 aa15.51■□□□□ 0.07
CLIP1-212ENST00000540304 TOP2BQ02880 1626 aa15.49■□□□□ 0.07
CLIP1-212ENST00000540304 BIVM-ERCC5R4GMW8 1640 aa15.48■□□□□ 0.07
CLIP1-212ENST00000540304 RUSC2Q8N2Y8 1516 aa15.44■□□□□ 0.06
CLIP1-212ENST00000540304 CADPSQ9ULU8 1353 aa15.43■□□□□ 0.06
CLIP1-212ENST00000540304 CSRNP3Q8WYN3 585 aa15.4■□□□□ 0.06
CLIP1-212ENST00000540304 CUX1P39880 1505 aa15.39■□□□□ 0.05
CLIP1-212ENST00000540304 KIF21BO75037 1637 aa15.33■□□□□ 0.04
CLIP1-212ENST00000540304 GOLGA3Q08378 1498 aa15.33■□□□□ 0.04
CLIP1-212ENST00000540304 PCGF6Q9BYE7 350 aa15.32■□□□□ 0.04
CLIP1-212ENST00000540304 TNIKQ9UKE5 1360 aa15.31■□□□□ 0.04
CLIP1-212ENST00000540304 CEP164Q9UPV0 1460 aa15.3■□□□□ 0.04
CLIP1-212ENST00000540304 FANCD2Q9BXW9 1451 aa15.28■□□□□ 0.04
CLIP1-212ENST00000540304 LAMC3Q9Y6N6 1575 aa15.27■□□□□ 0.03
CLIP1-212ENST00000540304 CEP162Q5TB80 1403 aa15.25■□□□□ 0.03
CLIP1-212ENST00000540304 NESP48681 1621 aa15.24■□□□□ 0.03
CLIP1-212ENST00000540304 UBTFP17480 764 aaKnown RBP15.23■□□□□ 0.03
CLIP1-212ENST00000540304 KIF27Q86VH2 1401 aa15.21■□□□□ 0.03
CLIP1-212ENST00000540304 TRIM26Q12899 539 aaPredicted RBP15.21■□□□□ 0.02
CLIP1-212ENST00000540304 DNMBPQ6XZF7 1577 aa15.19■□□□□ 0.02
CLIP1-212ENST00000540304 FGD5Q6ZNL6 1462 aa15.19■□□□□ 0.02
CLIP1-212ENST00000540304 RAPGEF2Q9Y4G8 1499 aa15.19■□□□□ 0.02
CLIP1-212ENST00000540304 ERICH3Q5RHP9 1530 aa15.18■□□□□ 0.02
CLIP1-212ENST00000540304 PRXQ9BXM0 1461 aa15.16■□□□□ 0.02
CLIP1-212ENST00000540304 DNAJC5BQ9UF47 199 aa15.15■□□□□ 0.02
CLIP1-212ENST00000540304 PPARGC1BQ86YN6 1023 aaKnown RBP15.14■□□□□ 0.01
CLIP1-212ENST00000540304 TOPBP1Q92547 1522 aa15.14■□□□□ 0.01
CLIP1-212ENST00000540304 CUX2O14529 1486 aa15.13■□□□□ 0.01
CLIP1-212ENST00000540304 PDS5BQ9NTI5 1447 aa15.12■□□□□ 0.01
CLIP1-212ENST00000540304 KIF21AQ7Z4S6 1674 aa15.09■□□□□ 0.01
CLIP1-212ENST00000540304 CLIP1P30622 1438 aa15.08■□□□□ 0
CLIP1-212ENST00000540304 POLA1P09884 1462 aaPredicted RBP15.08■□□□□ 0
CLIP1-212ENST00000540304 PRKCSHP14314 528 aaPredicted RBP15.08■□□□□ 0
CLIP1-212ENST00000540304 URB2Q14146 1524 aaKnown RBP15.08■□□□□ 0
CLIP1-212ENST00000540304 ABCA10Q8WWZ4 1543 aa15.05■□□□□ 0
CLIP1-212ENST00000540304 IGF1RP08069 1367 aa15.04■□□□□ -0
CLIP1-212ENST00000540304 RAD54L2Q9Y4B4 1467 aa15.03■□□□□ -0
CLIP1-212ENST00000540304 WDR97A6NE52 1622 aa15.02□□□□□ -0.01
CLIP1-212ENST00000540304 TTBK1Q5TCY1 1321 aaPredicted RBP15.01□□□□□ -0.01
CLIP1-212ENST00000540304 HRCP23327 699 aa15□□□□□ -0.01
CLIP1-212ENST00000540304 VPS8Q8N3P4 1428 aa14.98□□□□□ -0.01
CLIP1-212ENST00000540304 RANGAP1P46060 587 aaPredicted RBP14.98□□□□□ -0.01
CLIP1-212ENST00000540304 CARMIL1Q5VZK9 1371 aa14.98□□□□□ -0.01
CLIP1-212ENST00000540304 CUL7Q14999 1698 aa14.94□□□□□ -0.02
CLIP1-212ENST00000540304 ABCA5Q8WWZ7 1642 aa14.93□□□□□ -0.02
CLIP1-212ENST00000540304 MRC2Q9UBG0 1479 aa14.93□□□□□ -0.02
CLIP1-212ENST00000540304 ARAP1Q96P48 1450 aa14.91□□□□□ -0.02
CLIP1-212ENST00000540304 TARBP1Q13395 1621 aaKnown RBP14.9□□□□□ -0.02
CLIP1-212ENST00000540304 GAPVD1Q14C86 1478 aa14.87□□□□□ -0.03
CLIP1-212ENST00000540304 ARHGAP35Q9NRY4 1499 aa14.86□□□□□ -0.03
CLIP1-212ENST00000540304 TDRD9Q8NDG6 1382 aaKnown RBP14.86□□□□□ -0.03
CLIP1-212ENST00000540304 WDR62O43379 1518 aa14.85□□□□□ -0.03
CLIP1-212ENST00000540304 APLP2Q06481 763 aa14.83□□□□□ -0.04
CLIP1-212ENST00000540304 CTTNBP2Q8WZ74 1663 aa14.83□□□□□ -0.04
CLIP1-212ENST00000540304 PBRM1Q86U86 1689 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms