RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 GRIN2AQ12879 1464 aa32.11■■■□□ 2.73
TNFRSF1A-205ENST00000534885 ARAP1Q96P48 1450 aa32.1■■■□□ 2.73
TNFRSF1A-205ENST00000534885 CHMP7Q8WUX9 453 aaPredicted RBP32.05■■■□□ 2.72
TNFRSF1A-205ENST00000534885 VPS8Q8N3P4 1428 aa32.04■■■□□ 2.72
TNFRSF1A-205ENST00000534885 FBLN2P98095 1184 aa32.02■■■□□ 2.72
TNFRSF1A-205ENST00000534885 IQGAP2Q13576 1575 aa31.97■■■□□ 2.71
TNFRSF1A-205ENST00000534885 CEP170Q5SW79 1584 aa31.94■■■□□ 2.7
TNFRSF1A-205ENST00000534885 EFCAB5A4FU69 1503 aa31.94■■■□□ 2.7
TNFRSF1A-205ENST00000534885 P3H3Q8IVL6 736 aa31.91■■■□□ 2.7
TNFRSF1A-205ENST00000534885 KIAA0586Q9BVV6 1533 aa31.9■■■□□ 2.7
TNFRSF1A-205ENST00000534885 SAMD9Q5K651 1589 aa31.88■■■□□ 2.69
TNFRSF1A-205ENST00000534885 CHD1O14646 1710 aa31.87■■■□□ 2.69
TNFRSF1A-205ENST00000534885 PPARGC1BQ86YN6 1023 aaKnown RBP31.87■■■□□ 2.69
TNFRSF1A-205ENST00000534885 NUP160Q12769 1436 aa31.87■■■□□ 2.69
TNFRSF1A-205ENST00000534885 FHOD3Q2V2M9 1422 aa31.86■■■□□ 2.69
TNFRSF1A-205ENST00000534885 UGGT2Q9NYU1 1516 aa31.79■■■□□ 2.68
TNFRSF1A-205ENST00000534885 PCF11O94913 1555 aaKnown RBP31.68■■■□□ 2.66
TNFRSF1A-205ENST00000534885 DISP1Q96F81 1524 aa31.68■■■□□ 2.66
TNFRSF1A-205ENST00000534885 APLP2Q06481 763 aa31.67■■■□□ 2.66
TNFRSF1A-205ENST00000534885 TTBK1Q5TCY1 1321 aaPredicted RBP31.67■■■□□ 2.66
TNFRSF1A-205ENST00000534885 KIAA0556O60303 1618 aa31.66■■■□□ 2.66
TNFRSF1A-205ENST00000534885 FMN1Q68DA7 1419 aa31.65■■■□□ 2.66
TNFRSF1A-205ENST00000534885 TRIM26Q12899 539 aaPredicted RBP31.63■■■□□ 2.65
TNFRSF1A-205ENST00000534885 JPH4Q96JJ6 628 aa31.62■■■□□ 2.65
TNFRSF1A-205ENST00000534885 PCGF6Q9BYE7 350 aa31.62■■■□□ 2.65
TNFRSF1A-205ENST00000534885 CASKIN1Q8WXD9 1431 aa31.58■■■□□ 2.65
TNFRSF1A-205ENST00000534885 FYCO1Q9BQS8 1478 aa31.58■■■□□ 2.65
TNFRSF1A-205ENST00000534885 ATP1B4Q9UN42 357 aaPredicted RBP31.52■■■□□ 2.64
TNFRSF1A-205ENST00000534885 TIAM1Q13009 1591 aa31.5■■■□□ 2.63
TNFRSF1A-205ENST00000534885 KANK4Q5T7N3 995 aaPredicted RBP31.5■■■□□ 2.63
TNFRSF1A-205ENST00000534885 CARMIL2Q6F5E8 1435 aa31.49■■■□□ 2.63
TNFRSF1A-205ENST00000534885 MAP3K1Q13233 1512 aa31.47■■■□□ 2.63
TNFRSF1A-205ENST00000534885 CLASP1Q7Z460 1538 aa31.47■■■□□ 2.63
TNFRSF1A-205ENST00000534885 SHROOM2Q13796 1616 aa31.47■■■□□ 2.63
TNFRSF1A-205ENST00000534885 CFAP43Q8NDM7 1665 aa31.45■■■□□ 2.63
TNFRSF1A-205ENST00000534885 PRG4Q92954 1404 aaPredicted RBP31.45■■■□□ 2.62
TNFRSF1A-205ENST00000534885 LRRIQ1Q96JM4 1722 aa31.44■■■□□ 2.62
TNFRSF1A-205ENST00000534885 HECW1Q76N89 1606 aa31.37■■■□□ 2.61
TNFRSF1A-205ENST00000534885 LRRC9Q6ZRR7 1453 aa31.35■■■□□ 2.61
TNFRSF1A-205ENST00000534885 RAPGEF6Q8TEU7 1601 aa31.32■■■□□ 2.6
TNFRSF1A-205ENST00000534885 ERCC6L2Q5T890 1561 aa31.32■■■□□ 2.6
TNFRSF1A-205ENST00000534885 PLB1Q6P1J6 1458 aa31.29■■■□□ 2.6
TNFRSF1A-205ENST00000534885 EPRSP07814 1512 aaKnown RBP31.27■■■□□ 2.6
TNFRSF1A-205ENST00000534885 CCDC18Q5T9S5 1454 aa31.26■■■□□ 2.6
TNFRSF1A-205ENST00000534885 NUP153P49790 1475 aaKnown RBP31.25■■■□□ 2.59
TNFRSF1A-205ENST00000534885 CDK13Q14004 1512 aaKnown RBP31.24■■■□□ 2.59
TNFRSF1A-205ENST00000534885 ARID3CA6NKF2 412 aa31.23■■■□□ 2.59
TNFRSF1A-205ENST00000534885 OSCARQ8IYS5 282 aa31.23■■■□□ 2.59
TNFRSF1A-205ENST00000534885 PTPRGP23470 1445 aa31.22■■■□□ 2.59
TNFRSF1A-205ENST00000534885 ABCA8O94911 1581 aa31.2■■■□□ 2.58
TNFRSF1A-205ENST00000534885 MTUS2Q5JR59 1369 aa31.17■■■□□ 2.58
TNFRSF1A-205ENST00000534885 MAGI3Q5TCQ9 1506 aa31.16■■■□□ 2.58
TNFRSF1A-205ENST00000534885 EHBP1L1Q8N3D4 1523 aa31.11■■■□□ 2.57
TNFRSF1A-205ENST00000534885 PHLDB1Q86UU1 1377 aa31.08■■■□□ 2.57
TNFRSF1A-205ENST00000534885 RRBP1Q9P2E9 1410 aaKnown RBP31.04■■■□□ 2.56
TNFRSF1A-205ENST00000534885 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.04■■■□□ 2.56
TNFRSF1A-205ENST00000534885 HNRNPUL2Q1KMD3 747 aaKnown RBP31.04■■■□□ 2.56
TNFRSF1A-205ENST00000534885 UACAQ9BZF9 1416 aa31.04■■■□□ 2.56
TNFRSF1A-205ENST00000534885 SUPT6HQ7KZ85 1726 aaKnown RBP31.03■■■□□ 2.56
TNFRSF1A-205ENST00000534885 NCOA2Q15596 1464 aa31■■■□□ 2.55
TNFRSF1A-205ENST00000534885 ATP10BO94823 1461 aa30.99■■■□□ 2.55
TNFRSF1A-205ENST00000534885 CCNB3Q8WWL7 1395 aa30.97■■■□□ 2.55
TNFRSF1A-205ENST00000534885 ABCC2Q92887 1545 aa30.96■■■□□ 2.55
TNFRSF1A-205ENST00000534885 ARHGEF11O15085 1522 aa30.95■■■□□ 2.54
TNFRSF1A-205ENST00000534885 CDK11AQ9UQ88 783 aaPredicted RBP30.94■■■□□ 2.54
TNFRSF1A-205ENST00000534885 TROQ12816 1431 aaPredicted RBP30.9■■■□□ 2.54
TNFRSF1A-205ENST00000534885 UHRF1BP1LA0JNW5 1464 aa30.86■■■□□ 2.53
TNFRSF1A-205ENST00000534885 MYOM3Q5VTT5 1437 aa30.85■■■□□ 2.53
TNFRSF1A-205ENST00000534885 FGD6Q6ZV73 1430 aa30.85■■■□□ 2.53
TNFRSF1A-205ENST00000534885 PLEKHD1A6NEE1 506 aa30.82■■■□□ 2.52
TNFRSF1A-205ENST00000534885 KIF14Q15058 1648 aa30.81■■■□□ 2.52
TNFRSF1A-205ENST00000534885 ADCY10Q96PN6 1610 aa30.81■■■□□ 2.52
TNFRSF1A-205ENST00000534885 FAM50AQ14320 339 aaKnown RBP30.78■■■□□ 2.52
TNFRSF1A-205ENST00000534885 ZCCHC11Q5TAX3 1644 aaKnown RBP30.78■■■□□ 2.52
TNFRSF1A-205ENST00000534885 KDM5BQ9UGL1 1544 aa30.77■■■□□ 2.52
TNFRSF1A-205ENST00000534885 ITGAEP38570 1179 aa30.72■■■□□ 2.51
TNFRSF1A-205ENST00000534885 PTPN23Q9H3S7 1636 aa30.71■■■□□ 2.51
TNFRSF1A-205ENST00000534885 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.71■■■□□ 2.51
TNFRSF1A-205ENST00000534885 MIA2Q96PC5 1412 aa30.67■■■□□ 2.5
TNFRSF1A-205ENST00000534885 ABCC10Q5T3U5 1492 aa30.65■■■□□ 2.5
TNFRSF1A-205ENST00000534885 TCOF1Q13428 1488 aaKnown RBP30.64■■■□□ 2.49
TNFRSF1A-205ENST00000534885 GPATCH8Q9UKJ3 1502 aaKnown RBP30.63■■■□□ 2.49
TNFRSF1A-205ENST00000534885 ITSN2Q9NZM3 1697 aa30.63■■■□□ 2.49
TNFRSF1A-205ENST00000534885 RIMBP3CA6NJZ7 1639 aa30.61■■■□□ 2.49
TNFRSF1A-205ENST00000534885 RIMBP3BA6NNM3 1639 aa30.61■■■□□ 2.49
TNFRSF1A-205ENST00000534885 RIMBP3Q9UFD9 1639 aa30.61■■■□□ 2.49
TNFRSF1A-205ENST00000534885 CDC42BPAQ5VT25 1732 aa30.6■■■□□ 2.49
TNFRSF1A-205ENST00000534885 TTC37Q6PGP7 1564 aa30.54■■■□□ 2.48
TNFRSF1A-205ENST00000534885 CFDP1Q9UEE9 299 aaPredicted RBP30.54■■■□□ 2.48
TNFRSF1A-205ENST00000534885 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.54■■■□□ 2.48
TNFRSF1A-205ENST00000534885 KCNH8Q96L42 1107 aa30.53■■■□□ 2.48
TNFRSF1A-205ENST00000534885 ZNF644Q9H582 1327 aaPredicted RBP30.53■■■□□ 2.48
TNFRSF1A-205ENST00000534885 PTPRKQ15262 1439 aa30.52■■■□□ 2.48
TNFRSF1A-205ENST00000534885 HRCP23327 699 aa30.51■■■□□ 2.47
TNFRSF1A-205ENST00000534885 WDR7Q9Y4E6 1490 aa30.49■■■□□ 2.47
TNFRSF1A-205ENST00000534885 CAMSAP2Q08AD1 1489 aa30.48■■■□□ 2.47
TNFRSF1A-205ENST00000534885 CYB5RLQ6IPT4 315 aa30.47■■■□□ 2.47
TNFRSF1A-205ENST00000534885 PREX2Q70Z35 1606 aa30.47■■■□□ 2.47
TNFRSF1A-205ENST00000534885 CDC42BPBQ9Y5S2 1711 aa30.46■■■□□ 2.47
TNFRSF1A-205ENST00000534885 ASXL2Q76L83 1435 aa30.46■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms