RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 NISCHQ9Y2I1 1504 aa46.6■■■■■ 5.05
TNFRSF1A-205ENST00000534885 CCDC180Q9P1Z9 1646 aa40.7■■■■■ 4.11
TNFRSF1A-205ENST00000534885 ZCCHC6Q5VYS8 1495 aaKnown RBP39.11■■■■□ 3.85
TNFRSF1A-205ENST00000534885 ABCC9O60706 1549 aa38.73■■■■□ 3.79
TNFRSF1A-205ENST00000534885 DCAF8L2P0C7V8 631 aa38.58■■■■□ 3.77
TNFRSF1A-205ENST00000534885 DCAF1Q9Y4B6 1507 aa38.48■■■■□ 3.75
TNFRSF1A-205ENST00000534885 MYO15BQ96JP2 1530 aa38.09■■■■□ 3.69
TNFRSF1A-205ENST00000534885 NACADO15069 1562 aa37.94■■■■□ 3.66
TNFRSF1A-205ENST00000534885 SHROOM4Q9ULL8 1493 aa37.93■■■■□ 3.66
TNFRSF1A-205ENST00000534885 RB1CC1Q8TDY2 1594 aa37.68■■■■□ 3.62
TNFRSF1A-205ENST00000534885 SCRIBQ14160 1630 aa37.47■■■■□ 3.59
TNFRSF1A-205ENST00000534885 UNC13AQ9UPW8 1703 aa37■■■■□ 3.51
TNFRSF1A-205ENST00000534885 BICRAQ9NZM4 1560 aa36.6■■■■□ 3.45
TNFRSF1A-205ENST00000534885 PABPN1Q86U42 306 aaKnown RBP eCLIP36.49■■■■□ 3.43
TNFRSF1A-205ENST00000534885 SUPT5HO00267 1087 aaKnown RBP36.38■■■■□ 3.41
TNFRSF1A-205ENST00000534885 CECR2Q9BXF3 1484 aa36.27■■■■□ 3.4
TNFRSF1A-205ENST00000534885 RSF1Q96T23 1441 aaPredicted RBP36.08■■■■□ 3.37
TNFRSF1A-205ENST00000534885 MROH2BQ7Z745 1585 aa36.02■■■■□ 3.36
TNFRSF1A-205ENST00000534885 BAZ1AQ9NRL2 1556 aaPredicted RBP35.98■■■■□ 3.35
TNFRSF1A-205ENST00000534885 SMARCA4P51532 1647 aa35.88■■■■□ 3.33
TNFRSF1A-205ENST00000534885 WIZO95785 1651 aa35.73■■■■□ 3.31
TNFRSF1A-205ENST00000534885 EIF4G1Q04637 1599 aaKnown RBP35.5■■■■□ 3.27
TNFRSF1A-205ENST00000534885 PEG3Q9GZU2 1588 aa35.42■■■■□ 3.26
TNFRSF1A-205ENST00000534885 ATAD2BQ9ULI0 1458 aa35.32■■■■□ 3.24
TNFRSF1A-205ENST00000534885 TOP2AP11388 1531 aaKnown RBP35.31■■■■□ 3.24
TNFRSF1A-205ENST00000534885 SMARCA2P51531 1590 aa35.28■■■■□ 3.24
TNFRSF1A-205ENST00000534885 BAZ1BQ9UIG0 1483 aaKnown RBP35.11■■■■□ 3.21
TNFRSF1A-205ENST00000534885 CC2D2AQ9P2K1 1620 aa35.04■■■■□ 3.2
TNFRSF1A-205ENST00000534885 NCAPD3P42695 1498 aa35.03■■■■□ 3.2
TNFRSF1A-205ENST00000534885 HMGXB3Q12766 1538 aa34.97■■■■□ 3.19
TNFRSF1A-205ENST00000534885 CCDC88BA6NC98 1476 aa34.96■■■■□ 3.19
TNFRSF1A-205ENST00000534885 CHIC1Q5VXU3 224 aa34.69■■■■□ 3.14
TNFRSF1A-205ENST00000534885 DNAJC5BQ9UF47 199 aa34.35■■■■□ 3.09
TNFRSF1A-205ENST00000534885 CFTRP13569 1480 aa34.22■■■■□ 3.07
TNFRSF1A-205ENST00000534885 ABCC8Q09428 1581 aa34.21■■■■□ 3.07
TNFRSF1A-205ENST00000534885 TRIM41Q8WV44 630 aa34.17■■■■□ 3.06
TNFRSF1A-205ENST00000534885 CADPSQ9ULU8 1353 aa34.12■■■■□ 3.05
TNFRSF1A-205ENST00000534885 PRDM2Q13029 1718 aa34.04■■■■□ 3.04
TNFRSF1A-205ENST00000534885 NESP48681 1621 aa33.96■■■■□ 3.03
TNFRSF1A-205ENST00000534885 WRNQ14191 1432 aaPredicted RBP eCLIP33.96■■■■□ 3.03
TNFRSF1A-205ENST00000534885 LAMC3Q9Y6N6 1575 aa33.88■■■■□ 3.01
TNFRSF1A-205ENST00000534885 SYNJ1O43426 1573 aa33.86■■■■□ 3.01
TNFRSF1A-205ENST00000534885 FANCD2Q9BXW9 1451 aa33.77■■■■□ 3
TNFRSF1A-205ENST00000534885 TOP2BQ02880 1626 aa33.71■■■□□ 2.99
TNFRSF1A-205ENST00000534885 CUX1P39880 1505 aa33.69■■■□□ 2.98
TNFRSF1A-205ENST00000534885 BIVM-ERCC5R4GMW8 1640 aa33.68■■■□□ 2.98
TNFRSF1A-205ENST00000534885 PDS5BQ9NTI5 1447 aa33.6■■■□□ 2.97
TNFRSF1A-205ENST00000534885 FAM9AQ8IZU1 332 aaPredicted RBP33.6■■■□□ 2.97
TNFRSF1A-205ENST00000534885 CEP164Q9UPV0 1460 aa33.57■■■□□ 2.96
TNFRSF1A-205ENST00000534885 KIF21AQ7Z4S6 1674 aa33.55■■■□□ 2.96
TNFRSF1A-205ENST00000534885 SOGA1O94964 1423 aa33.5■■■□□ 2.95
TNFRSF1A-205ENST00000534885 DNMBPQ6XZF7 1577 aa33.42■■■□□ 2.94
TNFRSF1A-205ENST00000534885 RUSC2Q8N2Y8 1516 aa33.41■■■□□ 2.94
TNFRSF1A-205ENST00000534885 LOC105371045A0A1W2PR82 267 aa33.4■■■□□ 2.94
TNFRSF1A-205ENST00000534885 TOPBP1Q92547 1522 aa33.39■■■□□ 2.94
TNFRSF1A-205ENST00000534885 URB2Q14146 1524 aaKnown RBP33.38■■■□□ 2.93
TNFRSF1A-205ENST00000534885 FGD5Q6ZNL6 1462 aa33.35■■■□□ 2.93
TNFRSF1A-205ENST00000534885 EEA1Q15075 1411 aa33.31■■■□□ 2.92
TNFRSF1A-205ENST00000534885 POLA1P09884 1462 aaPredicted RBP33.22■■■□□ 2.91
TNFRSF1A-205ENST00000534885 MRC2Q9UBG0 1479 aa33.21■■■□□ 2.91
TNFRSF1A-205ENST00000534885 ERCC6Q03468 1493 aa33.2■■■□□ 2.9
TNFRSF1A-205ENST00000534885 CSRNP3Q8WYN3 585 aa33.18■■■□□ 2.9
TNFRSF1A-205ENST00000534885 EHMT2Q96KQ7 1210 aa33.17■■■□□ 2.9
TNFRSF1A-205ENST00000534885 RAD54L2Q9Y4B4 1467 aa33.12■■■□□ 2.89
TNFRSF1A-205ENST00000534885 KIF27Q86VH2 1401 aa33.1■■■□□ 2.89
TNFRSF1A-205ENST00000534885 CUX2O14529 1486 aa33.08■■■□□ 2.89
TNFRSF1A-205ENST00000534885 WDR62O43379 1518 aa33.05■■■□□ 2.88
TNFRSF1A-205ENST00000534885 THOC2Q8NI27 1593 aaKnown RBP33.02■■■□□ 2.88
TNFRSF1A-205ENST00000534885 ABCA10Q8WWZ4 1543 aa33.02■■■□□ 2.88
TNFRSF1A-205ENST00000534885 WDR97A6NE52 1622 aa32.97■■■□□ 2.87
TNFRSF1A-205ENST00000534885 KIF21BO75037 1637 aa32.94■■■□□ 2.86
TNFRSF1A-205ENST00000534885 TARBP1Q13395 1621 aaKnown RBP32.92■■■□□ 2.86
TNFRSF1A-205ENST00000534885 GOLGA3Q08378 1498 aa32.88■■■□□ 2.85
TNFRSF1A-205ENST00000534885 IGF1RP08069 1367 aa32.84■■■□□ 2.85
TNFRSF1A-205ENST00000534885 PRXQ9BXM0 1461 aa32.84■■■□□ 2.85
TNFRSF1A-205ENST00000534885 RAPGEF2Q9Y4G8 1499 aa32.83■■■□□ 2.85
TNFRSF1A-205ENST00000534885 TDRD9Q8NDG6 1382 aaKnown RBP32.81■■■□□ 2.84
TNFRSF1A-205ENST00000534885 ABCA5Q8WWZ7 1642 aa32.8■■■□□ 2.84
TNFRSF1A-205ENST00000534885 UBTFP17480 764 aaKnown RBP32.76■■■□□ 2.83
TNFRSF1A-205ENST00000534885 IFT140Q96RY7 1462 aa32.76■■■□□ 2.83
TNFRSF1A-205ENST00000534885 ERICH3Q5RHP9 1530 aa32.75■■■□□ 2.83
TNFRSF1A-205ENST00000534885 TNIKQ9UKE5 1360 aa32.73■■■□□ 2.83
TNFRSF1A-205ENST00000534885 GAPVD1Q14C86 1478 aa32.72■■■□□ 2.83
TNFRSF1A-205ENST00000534885 CARMIL1Q5VZK9 1371 aa32.66■■■□□ 2.82
TNFRSF1A-205ENST00000534885 ZNF608Q9ULD9 1512 aaPredicted RBP32.65■■■□□ 2.82
TNFRSF1A-205ENST00000534885 AQRO60306 1485 aaKnown RBP eCLIP32.64■■■□□ 2.822e-6■■■■■ 30
TNFRSF1A-205ENST00000534885 CUL7Q14999 1698 aa32.6■■■□□ 2.81
TNFRSF1A-205ENST00000534885 PBRM1Q86U86 1689 aa32.58■■■□□ 2.81
TNFRSF1A-205ENST00000534885 CEP162Q5TB80 1403 aa32.58■■■□□ 2.81
TNFRSF1A-205ENST00000534885 EIF4G3O43432 1585 aaKnown RBP32.53■■■□□ 2.8
TNFRSF1A-205ENST00000534885 GRIN2BQ13224 1484 aa32.48■■■□□ 2.79
TNFRSF1A-205ENST00000534885 ADAMTS12P58397 1594 aa32.38■■■□□ 2.77
TNFRSF1A-205ENST00000534885 CLIP1P30622 1438 aa32.37■■■□□ 2.77
TNFRSF1A-205ENST00000534885 FHAD1B1AJZ9 1412 aa32.35■■■□□ 2.77
TNFRSF1A-205ENST00000534885 RANGAP1P46060 587 aaPredicted RBP32.35■■■□□ 2.77
TNFRSF1A-205ENST00000534885 SNAPC4Q5SXM2 1469 aa32.33■■■□□ 2.77
TNFRSF1A-205ENST00000534885 CTTNBP2Q8WZ74 1663 aa32.24■■■□□ 2.75
TNFRSF1A-205ENST00000534885 MAGI1Q96QZ7 1491 aaPredicted RBP32.23■■■□□ 2.75
TNFRSF1A-205ENST00000534885 ARHGAP35Q9NRY4 1499 aa32.12■■■□□ 2.73
TNFRSF1A-205ENST00000534885 SYNJ2O15056 1496 aa32.12■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms