RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 JPH4Q96JJ6 628 aa14.43□□□□□ -0.1
NEDD8-207ENST00000533242 MAPKBP1O60336 1514 aa14.41□□□□□ -0.1
NEDD8-207ENST00000533242 ABCC10Q5T3U5 1492 aa14.41□□□□□ -0.1
NEDD8-207ENST00000533242 DIP2BQ9P265 1576 aa14.39□□□□□ -0.11
NEDD8-207ENST00000533242 ADCY10Q96PN6 1610 aa14.38□□□□□ -0.11
NEDD8-207ENST00000533242 NPM1P06748 294 aaKnown RBP eCLIP14.37□□□□□ -0.11
NEDD8-207ENST00000533242 FAM69CQ0P6D2 419 aa14.36□□□□□ -0.11
NEDD8-207ENST00000533242 CUL7Q14999 1698 aa14.33□□□□□ -0.12
NEDD8-207ENST00000533242 KDM6BO15054 1643 aa14.33□□□□□ -0.12
NEDD8-207ENST00000533242 KIAA0586Q9BVV6 1533 aa14.33□□□□□ -0.12
NEDD8-207ENST00000533242 TSPOAP1O95153 1857 aa14.3□□□□□ -0.12
NEDD8-207ENST00000533242 CHIC1Q5VXU3 224 aa14.28□□□□□ -0.12
NEDD8-207ENST00000533242 IGF1RP08069 1367 aa14.26□□□□□ -0.13
NEDD8-207ENST00000533242 KIF27Q86VH2 1401 aa14.26□□□□□ -0.13
NEDD8-207ENST00000533242 KDM4FA0A1W2PPD8 638 aa14.22□□□□□ -0.13
NEDD8-207ENST00000533242 PTPRGP23470 1445 aa14.21□□□□□ -0.13
NEDD8-207ENST00000533242 GLI2P10070 1586 aa14.21□□□□□ -0.14
NEDD8-207ENST00000533242 PPRC1Q5VV67 1664 aaKnown RBP14.2□□□□□ -0.14
NEDD8-207ENST00000533242 ABCC2Q92887 1545 aa14.19□□□□□ -0.14
NEDD8-207ENST00000533242 CARMIL2Q6F5E8 1435 aa14.19□□□□□ -0.14
NEDD8-207ENST00000533242 TNIKQ9UKE5 1360 aa14.19□□□□□ -0.14
NEDD8-207ENST00000533242 PLB1Q6P1J6 1458 aa14.17□□□□□ -0.14
NEDD8-207ENST00000533242 IQGAP2Q13576 1575 aa14.17□□□□□ -0.14
NEDD8-207ENST00000533242 UHRF1BP1LA0JNW5 1464 aa14.17□□□□□ -0.14
NEDD8-207ENST00000533242 CARMIL1Q5VZK9 1371 aa14.17□□□□□ -0.14
NEDD8-207ENST00000533242 ASXL2Q76L83 1435 aa14.16□□□□□ -0.14
NEDD8-207ENST00000533242 MAP3K4Q9Y6R4 1608 aa14.12□□□□□ -0.15
NEDD8-207ENST00000533242 UACAQ9BZF9 1416 aa14.12□□□□□ -0.15
NEDD8-207ENST00000533242 TTBK1Q5TCY1 1321 aaPredicted RBP14.11□□□□□ -0.15
NEDD8-207ENST00000533242 DISP1Q96F81 1524 aa14.1□□□□□ -0.15
NEDD8-207ENST00000533242 ADGRL1O94910 1474 aa14.09□□□□□ -0.15
NEDD8-207ENST00000533242 KDM5BQ9UGL1 1544 aa14.09□□□□□ -0.15
NEDD8-207ENST00000533242 ZCCHC11Q5TAX3 1644 aaKnown RBP14.09□□□□□ -0.15
NEDD8-207ENST00000533242 EPRSP07814 1512 aaKnown RBP14.08□□□□□ -0.15
NEDD8-207ENST00000533242 UGGT2Q9NYU1 1516 aa14.08□□□□□ -0.16
NEDD8-207ENST00000533242 TEX14Q8IWB6 1497 aa14.07□□□□□ -0.16
NEDD8-207ENST00000533242 KIAA0556O60303 1618 aa14.05□□□□□ -0.16
NEDD8-207ENST00000533242 COL17A1Q9UMD9 1497 aaPredicted RBP14.05□□□□□ -0.16
NEDD8-207ENST00000533242 RAPGEF2Q9Y4G8 1499 aa14.04□□□□□ -0.16
NEDD8-207ENST00000533242 ILDR1Q86SU0 546 aaPredicted RBP14.02□□□□□ -0.17
NEDD8-207ENST00000533242 CTTNBP2Q8WZ74 1663 aa14□□□□□ -0.17
NEDD8-207ENST00000533242 WDR7Q9Y4E6 1490 aa13.99□□□□□ -0.17
NEDD8-207ENST00000533242 HECW2Q9P2P5 1572 aa13.99□□□□□ -0.17
NEDD8-207ENST00000533242 CFAP43Q8NDM7 1665 aa13.99□□□□□ -0.17
NEDD8-207ENST00000533242 MAGI3Q5TCQ9 1506 aa13.95□□□□□ -0.18
NEDD8-207ENST00000533242 ABCA8O94911 1581 aa13.95□□□□□ -0.18
NEDD8-207ENST00000533242 GOLGA3Q08378 1498 aa13.94□□□□□ -0.18
NEDD8-207ENST00000533242 CD109Q6YHK3 1445 aa13.92□□□□□ -0.18
NEDD8-207ENST00000533242 KIF21BO75037 1637 aa13.88□□□□□ -0.19
NEDD8-207ENST00000533242 ARAP3Q8WWN8 1544 aa13.85□□□□□ -0.19
NEDD8-207ENST00000533242 KCNH8Q96L42 1107 aa13.85□□□□□ -0.19
NEDD8-207ENST00000533242 PRXQ9BXM0 1461 aa13.83□□□□□ -0.2
NEDD8-207ENST00000533242 ABCA9Q8IUA7 1624 aa13.82□□□□□ -0.2
NEDD8-207ENST00000533242 PHLDB1Q86UU1 1377 aa13.8□□□□□ -0.2
NEDD8-207ENST00000533242 ADAMTSL3P82987 1691 aa13.8□□□□□ -0.2
NEDD8-207ENST00000533242 ATP10BO94823 1461 aa13.79□□□□□ -0.2
NEDD8-207ENST00000533242 FAM9AQ8IZU1 332 aaPredicted RBP13.78□□□□□ -0.2
NEDD8-207ENST00000533242 SAMD9Q5K651 1589 aa13.76□□□□□ -0.21
NEDD8-207ENST00000533242 RAPGEF6Q8TEU7 1601 aa13.76□□□□□ -0.21
NEDD8-207ENST00000533242 NEO1Q92859 1461 aa13.75□□□□□ -0.21
NEDD8-207ENST00000533242 PTPRMP28827 1452 aa13.75□□□□□ -0.21
NEDD8-207ENST00000533242 BCORL1Q5H9F3 1711 aa13.74□□□□□ -0.21
NEDD8-207ENST00000533242 FRMPD1Q5SYB0 1578 aa13.73□□□□□ -0.21
NEDD8-207ENST00000533242 FBXO41Q8TF61 875 aa13.72□□□□□ -0.21
NEDD8-207ENST00000533242 ARID3CA6NKF2 412 aa13.71□□□□□ -0.21
NEDD8-207ENST00000533242 P3H3Q8IVL6 736 aa13.7□□□□□ -0.22
NEDD8-207ENST00000533242 MADDQ8WXG6 1647 aa13.7□□□□□ -0.22
NEDD8-207ENST00000533242 RAPGEF3O95398 923 aa13.68□□□□□ -0.22
NEDD8-207ENST00000533242 ARHGEF40Q8TER5 1519 aa13.68□□□□□ -0.22
NEDD8-207ENST00000533242 PCF11O94913 1555 aaKnown RBP13.68□□□□□ -0.22
NEDD8-207ENST00000533242 RICTORQ6R327 1708 aa13.68□□□□□ -0.22
NEDD8-207ENST00000533242 CFAP74Q9C0B2 1584 aa13.67□□□□□ -0.22
NEDD8-207ENST00000533242 RIMS1Q86UR5 1692 aaKnown RBP13.66□□□□□ -0.22
NEDD8-207ENST00000533242 NUP153P49790 1475 aaKnown RBP13.66□□□□□ -0.22
NEDD8-207ENST00000533242 LMTK3Q96Q04 1460 aa13.64□□□□□ -0.23
NEDD8-207ENST00000533242 DENND4BO75064 1496 aaPredicted RBP13.63□□□□□ -0.23
NEDD8-207ENST00000533242 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.63□□□□□ -0.23
NEDD8-207ENST00000533242 HNRNPUL2Q1KMD3 747 aaKnown RBP13.63□□□□□ -0.23
NEDD8-207ENST00000533242 ARID4BQ4LE39 1312 aaPredicted RBP13.63□□□□□ -0.23
NEDD8-207ENST00000533242 CSRNP3Q8WYN3 585 aa13.63□□□□□ -0.23
NEDD8-207ENST00000533242 ZMYM4Q5VZL5 1548 aa13.62□□□□□ -0.23
NEDD8-207ENST00000533242 FHOD3Q2V2M9 1422 aa13.62□□□□□ -0.23
NEDD8-207ENST00000533242 AKNAQ7Z591 1439 aa13.61□□□□□ -0.23
NEDD8-207ENST00000533242 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.6□□□□□ -0.23
NEDD8-207ENST00000533242 FANCAO15360 1455 aa13.6□□□□□ -0.23
NEDD8-207ENST00000533242 EFCAB5A4FU69 1503 aa13.59□□□□□ -0.23
NEDD8-207ENST00000533242 POGZQ7Z3K3 1410 aa13.59□□□□□ -0.23
NEDD8-207ENST00000533242 ZFYVE16Q7Z3T8 1539 aa13.59□□□□□ -0.23
NEDD8-207ENST00000533242 PLEKHD1A6NEE1 506 aa13.58□□□□□ -0.23
NEDD8-207ENST00000533242 EEA1Q15075 1411 aa13.58□□□□□ -0.24
NEDD8-207ENST00000533242 TTC37Q6PGP7 1564 aa13.58□□□□□ -0.24
NEDD8-207ENST00000533242 SIGLEC1Q9BZZ2 1709 aa13.58□□□□□ -0.24
NEDD8-207ENST00000533242 FER1L4A9Z1Z3 1794 aa13.57□□□□□ -0.24
NEDD8-207ENST00000533242 MAGI2Q86UL8 1455 aa13.56□□□□□ -0.24
NEDD8-207ENST00000533242 HECW1Q76N89 1606 aa13.55□□□□□ -0.24
NEDD8-207ENST00000533242 YEATS2Q9ULM3 1422 aa13.53□□□□□ -0.24
NEDD8-207ENST00000533242 RANGAP1P46060 587 aaPredicted RBP13.51□□□□□ -0.25
NEDD8-207ENST00000533242 MYO5CQ9NQX4 1742 aa13.51□□□□□ -0.25
NEDD8-207ENST00000533242 HSPA2P54652 639 aa13.5□□□□□ -0.25
NEDD8-207ENST00000533242 PREX1Q8TCU6 1659 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms