RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 NISCHQ9Y2I1 1504 aa20.52■□□□□ 0.88
NEDD8-207ENST00000533242 ABCC9O60706 1549 aa18.68■□□□□ 0.58
NEDD8-207ENST00000533242 CCDC180Q9P1Z9 1646 aa18.59■□□□□ 0.57
NEDD8-207ENST00000533242 RB1CC1Q8TDY2 1594 aa17.76■□□□□ 0.43
NEDD8-207ENST00000533242 DNAJC5BQ9UF47 199 aa17.69■□□□□ 0.42
NEDD8-207ENST00000533242 NACADO15069 1562 aa17.58■□□□□ 0.41
NEDD8-207ENST00000533242 UNC13AQ9UPW8 1703 aa17.4■□□□□ 0.38
NEDD8-207ENST00000533242 PABPN1Q86U42 306 aaKnown RBP eCLIP17.31■□□□□ 0.36
NEDD8-207ENST00000533242 DCAF8L2P0C7V8 631 aa17.3■□□□□ 0.36
NEDD8-207ENST00000533242 MYO15BQ96JP2 1530 aa17.28■□□□□ 0.36
NEDD8-207ENST00000533242 BICRAQ9NZM4 1560 aa17.23■□□□□ 0.35
NEDD8-207ENST00000533242 SHROOM4Q9ULL8 1493 aa17.02■□□□□ 0.32
NEDD8-207ENST00000533242 DCAF1Q9Y4B6 1507 aa16.97■□□□□ 0.31
NEDD8-207ENST00000533242 ZCCHC6Q5VYS8 1495 aaKnown RBP16.96■□□□□ 0.31
NEDD8-207ENST00000533242 CC2D2AQ9P2K1 1620 aa16.91■□□□□ 0.3
NEDD8-207ENST00000533242 CECR2Q9BXF3 1484 aa16.87■□□□□ 0.29
NEDD8-207ENST00000533242 SCRIBQ14160 1630 aa16.85■□□□□ 0.29
NEDD8-207ENST00000533242 EIF4G1Q04637 1599 aaKnown RBP16.82■□□□□ 0.28
NEDD8-207ENST00000533242 DNAJC5Q9H3Z4 198 aa16.44■□□□□ 0.22
NEDD8-207ENST00000533242 CUX2O14529 1486 aa16.25■□□□□ 0.19
NEDD8-207ENST00000533242 NCAPD3P42695 1498 aa16.2■□□□□ 0.18
NEDD8-207ENST00000533242 ERCC6Q03468 1493 aa16.15■□□□□ 0.18
NEDD8-207ENST00000533242 ATAD2BQ9ULI0 1458 aa16.11■□□□□ 0.17
NEDD8-207ENST00000533242 HMGXB3Q12766 1538 aa16.09■□□□□ 0.17
NEDD8-207ENST00000533242 SMARCA2P51531 1590 aa16.09■□□□□ 0.17
NEDD8-207ENST00000533242 SMARCA4P51532 1647 aa16.08■□□□□ 0.16
NEDD8-207ENST00000533242 NESP48681 1621 aa15.98■□□□□ 0.15
NEDD8-207ENST00000533242 BAZ1AQ9NRL2 1556 aaPredicted RBP15.95■□□□□ 0.14
NEDD8-207ENST00000533242 BAZ1BQ9UIG0 1483 aaKnown RBP15.95■□□□□ 0.14
NEDD8-207ENST00000533242 THOC2Q8NI27 1593 aaKnown RBP15.94■□□□□ 0.14
NEDD8-207ENST00000533242 PEG3Q9GZU2 1588 aa15.93■□□□□ 0.14
NEDD8-207ENST00000533242 LAMC3Q9Y6N6 1575 aa15.9■□□□□ 0.14
NEDD8-207ENST00000533242 KIF21AQ7Z4S6 1674 aa15.84■□□□□ 0.13
NEDD8-207ENST00000533242 MROH2BQ7Z745 1585 aa15.79■□□□□ 0.12
NEDD8-207ENST00000533242 PDS5BQ9NTI5 1447 aa15.78■□□□□ 0.12
NEDD8-207ENST00000533242 CADPSQ9ULU8 1353 aa15.68■□□□□ 0.1
NEDD8-207ENST00000533242 MRC2Q9UBG0 1479 aa15.68■□□□□ 0.1
NEDD8-207ENST00000533242 WDR62O43379 1518 aa15.66■□□□□ 0.1
NEDD8-207ENST00000533242 WIZO95785 1651 aa15.61■□□□□ 0.09
NEDD8-207ENST00000533242 TRIM41Q8WV44 630 aa15.57■□□□□ 0.08
NEDD8-207ENST00000533242 CEP164Q9UPV0 1460 aa15.56■□□□□ 0.08
NEDD8-207ENST00000533242 FANCD2Q9BXW9 1451 aa15.51■□□□□ 0.07
NEDD8-207ENST00000533242 CFTRP13569 1480 aa15.46■□□□□ 0.07
NEDD8-207ENST00000533242 TOP2AP11388 1531 aaKnown RBP15.41■□□□□ 0.06
NEDD8-207ENST00000533242 PRDM2Q13029 1718 aa15.41■□□□□ 0.06
NEDD8-207ENST00000533242 OSCARQ8IYS5 282 aa15.4■□□□□ 0.06
NEDD8-207ENST00000533242 URB2Q14146 1524 aaKnown RBP15.4■□□□□ 0.06
NEDD8-207ENST00000533242 RSF1Q96T23 1441 aaPredicted RBP15.36■□□□□ 0.05
NEDD8-207ENST00000533242 RIMBP3CA6NJZ7 1639 aa15.3■□□□□ 0.04
NEDD8-207ENST00000533242 RIMBP3BA6NNM3 1639 aa15.3■□□□□ 0.04
NEDD8-207ENST00000533242 RIMBP3Q9UFD9 1639 aa15.3■□□□□ 0.04
NEDD8-207ENST00000533242 IFT140Q96RY7 1462 aa15.26■□□□□ 0.03
NEDD8-207ENST00000533242 ZNF608Q9ULD9 1512 aaPredicted RBP15.23■□□□□ 0.03
NEDD8-207ENST00000533242 CCDC88BA6NC98 1476 aa15.21■□□□□ 0.02
NEDD8-207ENST00000533242 TOPBP1Q92547 1522 aa15.2■□□□□ 0.02
NEDD8-207ENST00000533242 ARHGEF11O15085 1522 aa15.19■□□□□ 0.02
NEDD8-207ENST00000533242 ABCC8Q09428 1581 aa15.18■□□□□ 0.02
NEDD8-207ENST00000533242 EIF4G3O43432 1585 aaKnown RBP15.18■□□□□ 0.02
NEDD8-207ENST00000533242 DNMBPQ6XZF7 1577 aa15.16■□□□□ 0.02
NEDD8-207ENST00000533242 CHD1O14646 1710 aa15.14■□□□□ 0.01
NEDD8-207ENST00000533242 TARBP1Q13395 1621 aaKnown RBP15.11■□□□□ 0.01
NEDD8-207ENST00000533242 AQRO60306 1485 aaKnown RBP eCLIP15.05■□□□□ -0
NEDD8-207ENST00000533242 CYB5RLQ6IPT4 315 aa15.03■□□□□ -0
NEDD8-207ENST00000533242 ARAP1Q96P48 1450 aa15.03■□□□□ -0
NEDD8-207ENST00000533242 POLA1P09884 1462 aaPredicted RBP15.02□□□□□ -0.01
NEDD8-207ENST00000533242 WDR97A6NE52 1622 aa14.99□□□□□ -0.01
NEDD8-207ENST00000533242 RAD54L2Q9Y4B4 1467 aa14.95□□□□□ -0.02
NEDD8-207ENST00000533242 FBLN2P98095 1184 aa14.95□□□□□ -0.02
NEDD8-207ENST00000533242 SOGA1O94964 1423 aa14.94□□□□□ -0.02
NEDD8-207ENST00000533242 CLASP1Q7Z460 1538 aa14.94□□□□□ -0.02
NEDD8-207ENST00000533242 TRHP20396 242 aaPredicted RBP14.93□□□□□ -0.02
NEDD8-207ENST00000533242 SNAPC4Q5SXM2 1469 aa14.92□□□□□ -0.02
NEDD8-207ENST00000533242 TDRD9Q8NDG6 1382 aaKnown RBP14.91□□□□□ -0.02
NEDD8-207ENST00000533242 SYNJ1O43426 1573 aa14.91□□□□□ -0.02
NEDD8-207ENST00000533242 FGD5Q6ZNL6 1462 aa14.9□□□□□ -0.02
NEDD8-207ENST00000533242 MAGI1Q96QZ7 1491 aaPredicted RBP14.89□□□□□ -0.03
NEDD8-207ENST00000533242 GRIN2BQ13224 1484 aa14.86□□□□□ -0.03
NEDD8-207ENST00000533242 CUX1P39880 1505 aa14.86□□□□□ -0.03
NEDD8-207ENST00000533242 PBRM1Q86U86 1689 aa14.84□□□□□ -0.03
NEDD8-207ENST00000533242 CHMP7Q8WUX9 453 aaPredicted RBP14.83□□□□□ -0.03
NEDD8-207ENST00000533242 SYNJ2O15056 1496 aa14.83□□□□□ -0.04
NEDD8-207ENST00000533242 GAPVD1Q14C86 1478 aa14.76□□□□□ -0.05
NEDD8-207ENST00000533242 ABCA5Q8WWZ7 1642 aa14.76□□□□□ -0.05
NEDD8-207ENST00000533242 ABCA10Q8WWZ4 1543 aa14.74□□□□□ -0.05
NEDD8-207ENST00000533242 AEBP2Q6ZN18 517 aaPredicted RBP14.68□□□□□ -0.06
NEDD8-207ENST00000533242 GRIN2AQ12879 1464 aa14.66□□□□□ -0.06
NEDD8-207ENST00000533242 ADAMTS12P58397 1594 aa14.66□□□□□ -0.06
NEDD8-207ENST00000533242 ERCC6L2Q5T890 1561 aa14.65□□□□□ -0.06
NEDD8-207ENST00000533242 CEP170Q5SW79 1584 aa14.63□□□□□ -0.07
NEDD8-207ENST00000533242 SHROOM2Q13796 1616 aa14.63□□□□□ -0.07
NEDD8-207ENST00000533242 NUP160Q12769 1436 aa14.63□□□□□ -0.07
NEDD8-207ENST00000533242 BIVM-ERCC5R4GMW8 1640 aa14.62□□□□□ -0.07
NEDD8-207ENST00000533242 WRNQ14191 1432 aaPredicted RBP eCLIP14.6□□□□□ -0.07
NEDD8-207ENST00000533242 TOP2BQ02880 1626 aa14.58□□□□□ -0.08
NEDD8-207ENST00000533242 FHAD1B1AJZ9 1412 aa14.58□□□□□ -0.08
NEDD8-207ENST00000533242 KIF13AQ9H1H9 1805 aa14.56□□□□□ -0.08
NEDD8-207ENST00000533242 ERICH3Q5RHP9 1530 aa14.56□□□□□ -0.08
NEDD8-207ENST00000533242 PRG4Q92954 1404 aaPredicted RBP14.47□□□□□ -0.09
NEDD8-207ENST00000533242 RUSC2Q8N2Y8 1516 aa14.45□□□□□ -0.1
NEDD8-207ENST00000533242 SUPT5HO00267 1087 aaKnown RBP14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms