RNA–Protein interactions for RNA: ENST00000523483.5

SDCBP-212, Transcript of syndecan binding protein, humanhuman

TSL 2 BASIC

Gene SDCBP, Length 3,589 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-212ENST00000523483 CLIP1P30622 1438 aa14.81□□□□□ -0.04
SDCBP-212ENST00000523483 SYNJ2O15056 1496 aa14.8□□□□□ -0.04
SDCBP-212ENST00000523483 ATP1B4Q9UN42 357 aaPredicted RBP14.79□□□□□ -0.04
SDCBP-212ENST00000523483 GRIN2AQ12879 1464 aa14.79□□□□□ -0.04
SDCBP-212ENST00000523483 PPARGC1BQ86YN6 1023 aaKnown RBP14.78□□□□□ -0.04
SDCBP-212ENST00000523483 JPH4Q96JJ6 628 aa14.7□□□□□ -0.06
SDCBP-212ENST00000523483 ARID3CA6NKF2 412 aa14.68□□□□□ -0.06
SDCBP-212ENST00000523483 CHD1O14646 1710 aa14.68□□□□□ -0.06
SDCBP-212ENST00000523483 FHOD3Q2V2M9 1422 aa14.68□□□□□ -0.06
SDCBP-212ENST00000523483 CEP170Q5SW79 1584 aa14.67□□□□□ -0.06
SDCBP-212ENST00000523483 APLP2Q06481 763 aa14.67□□□□□ -0.06
SDCBP-212ENST00000523483 OSCARQ8IYS5 282 aa14.67□□□□□ -0.06
SDCBP-212ENST00000523483 KIAA0586Q9BVV6 1533 aa14.66□□□□□ -0.06
SDCBP-212ENST00000523483 IQGAP2Q13576 1575 aa14.66□□□□□ -0.06
SDCBP-212ENST00000523483 ARHGAP35Q9NRY4 1499 aa14.65□□□□□ -0.06
SDCBP-212ENST00000523483 CTTNBP2Q8WZ74 1663 aa14.65□□□□□ -0.06
SDCBP-212ENST00000523483 ARAP1Q96P48 1450 aa14.63□□□□□ -0.07
SDCBP-212ENST00000523483 NUP160Q12769 1436 aa14.63□□□□□ -0.07
SDCBP-212ENST00000523483 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.59□□□□□ -0.07
SDCBP-212ENST00000523483 HNRNPUL2Q1KMD3 747 aaKnown RBP14.59□□□□□ -0.07
SDCBP-212ENST00000523483 PRG4Q92954 1404 aaPredicted RBP14.58□□□□□ -0.07
SDCBP-212ENST00000523483 VPS8Q8N3P4 1428 aa14.57□□□□□ -0.08
SDCBP-212ENST00000523483 CARMIL2Q6F5E8 1435 aa14.57□□□□□ -0.08
SDCBP-212ENST00000523483 EFCAB5A4FU69 1503 aa14.53□□□□□ -0.08
SDCBP-212ENST00000523483 DISP1Q96F81 1524 aa14.52□□□□□ -0.09
SDCBP-212ENST00000523483 UGGT2Q9NYU1 1516 aa14.51□□□□□ -0.09
SDCBP-212ENST00000523483 FMN1Q68DA7 1419 aa14.5□□□□□ -0.09
SDCBP-212ENST00000523483 PTPRGP23470 1445 aa14.48□□□□□ -0.09
SDCBP-212ENST00000523483 KIAA0556O60303 1618 aa14.48□□□□□ -0.09
SDCBP-212ENST00000523483 SAMD9Q5K651 1589 aa14.48□□□□□ -0.09
SDCBP-212ENST00000523483 ERCC6L2Q5T890 1561 aa14.48□□□□□ -0.09
SDCBP-212ENST00000523483 KANK4Q5T7N3 995 aaPredicted RBP14.45□□□□□ -0.1
SDCBP-212ENST00000523483 CLASP1Q7Z460 1538 aa14.45□□□□□ -0.1
SDCBP-212ENST00000523483 PLB1Q6P1J6 1458 aa14.45□□□□□ -0.1
SDCBP-212ENST00000523483 PCF11O94913 1555 aaKnown RBP14.44□□□□□ -0.1
SDCBP-212ENST00000523483 CYB5RLQ6IPT4 315 aa14.42□□□□□ -0.1
SDCBP-212ENST00000523483 PCGF6Q9BYE7 350 aa14.42□□□□□ -0.1
SDCBP-212ENST00000523483 CASKIN1Q8WXD9 1431 aa14.4□□□□□ -0.1
SDCBP-212ENST00000523483 MTUS2Q5JR59 1369 aa14.38□□□□□ -0.11
SDCBP-212ENST00000523483 FYCO1Q9BQS8 1478 aa14.38□□□□□ -0.11
SDCBP-212ENST00000523483 SHROOM2Q13796 1616 aa14.36□□□□□ -0.11
SDCBP-212ENST00000523483 CDK13Q14004 1512 aaKnown RBP14.36□□□□□ -0.11
SDCBP-212ENST00000523483 CDK11AQ9UQ88 783 aaPredicted RBP14.34□□□□□ -0.11
SDCBP-212ENST00000523483 UACAQ9BZF9 1416 aa14.33□□□□□ -0.11
SDCBP-212ENST00000523483 KCNH8Q96L42 1107 aa14.33□□□□□ -0.11
SDCBP-212ENST00000523483 NUP153P49790 1475 aaKnown RBP14.32□□□□□ -0.12
SDCBP-212ENST00000523483 EPRSP07814 1512 aaKnown RBP14.32□□□□□ -0.12
SDCBP-212ENST00000523483 NPM1P06748 294 aaKnown RBP eCLIP14.32□□□□□ -0.12
SDCBP-212ENST00000523483 TRIM26Q12899 539 aaPredicted RBP14.32□□□□□ -0.12
SDCBP-212ENST00000523483 RAPGEF6Q8TEU7 1601 aa14.32□□□□□ -0.12
SDCBP-212ENST00000523483 HECW1Q76N89 1606 aa14.32□□□□□ -0.12
SDCBP-212ENST00000523483 PLEKHD1A6NEE1 506 aa14.32□□□□□ -0.12
SDCBP-212ENST00000523483 ARHGEF11O15085 1522 aa14.32□□□□□ -0.12
SDCBP-212ENST00000523483 ITGAEP38570 1179 aa14.31□□□□□ -0.12
SDCBP-212ENST00000523483 TIAM1Q13009 1591 aa14.3□□□□□ -0.12
SDCBP-212ENST00000523483 LRRC9Q6ZRR7 1453 aa14.28□□□□□ -0.12
SDCBP-212ENST00000523483 FAM50AQ14320 339 aaKnown RBP14.27□□□□□ -0.12
SDCBP-212ENST00000523483 CCDC18Q5T9S5 1454 aa14.27□□□□□ -0.13
SDCBP-212ENST00000523483 ATP10BO94823 1461 aa14.26□□□□□ -0.13
SDCBP-212ENST00000523483 ABCA8O94911 1581 aa14.25□□□□□ -0.13
SDCBP-212ENST00000523483 ZNF777Q9ULD5 760 aaPredicted RBP14.24□□□□□ -0.13
SDCBP-212ENST00000523483 ABCC2Q92887 1545 aa14.23□□□□□ -0.13
SDCBP-212ENST00000523483 LRRIQ1Q96JM4 1722 aa14.23□□□□□ -0.13
SDCBP-212ENST00000523483 RIMBP3CA6NJZ7 1639 aa14.22□□□□□ -0.13
SDCBP-212ENST00000523483 RIMBP3BA6NNM3 1639 aa14.22□□□□□ -0.13
SDCBP-212ENST00000523483 RIMBP3Q9UFD9 1639 aa14.22□□□□□ -0.13
SDCBP-212ENST00000523483 PHLDB1Q86UU1 1377 aa14.21□□□□□ -0.13
SDCBP-212ENST00000523483 MAGI3Q5TCQ9 1506 aa14.21□□□□□ -0.13
SDCBP-212ENST00000523483 CFAP43Q8NDM7 1665 aa14.2□□□□□ -0.14
SDCBP-212ENST00000523483 MAP3K1Q13233 1512 aa14.19□□□□□ -0.14
SDCBP-212ENST00000523483 NCOA2Q15596 1464 aa14.18□□□□□ -0.14
SDCBP-212ENST00000523483 TROQ12816 1431 aaPredicted RBP14.17□□□□□ -0.14
SDCBP-212ENST00000523483 CCNB3Q8WWL7 1395 aa14.17□□□□□ -0.14
SDCBP-212ENST00000523483 ADCY10Q96PN6 1610 aa14.17□□□□□ -0.14
SDCBP-212ENST00000523483 EHBP1L1Q8N3D4 1523 aa14.17□□□□□ -0.14
SDCBP-212ENST00000523483 CFDP1Q9UEE9 299 aaPredicted RBP14.16□□□□□ -0.14
SDCBP-212ENST00000523483 UHRF1BP1LA0JNW5 1464 aa14.13□□□□□ -0.15
SDCBP-212ENST00000523483 ZCCHC11Q5TAX3 1644 aaKnown RBP14.13□□□□□ -0.15
SDCBP-212ENST00000523483 KDM5BQ9UGL1 1544 aa14.13□□□□□ -0.15
SDCBP-212ENST00000523483 ZNF644Q9H582 1327 aaPredicted RBP14.12□□□□□ -0.15
SDCBP-212ENST00000523483 ASXL2Q76L83 1435 aa14.12□□□□□ -0.15
SDCBP-212ENST00000523483 SUPT6HQ7KZ85 1726 aaKnown RBP14.12□□□□□ -0.15
SDCBP-212ENST00000523483 DNAJC5Q9H3Z4 198 aa14.11□□□□□ -0.15
SDCBP-212ENST00000523483 KIF14Q15058 1648 aa14.11□□□□□ -0.15
SDCBP-212ENST00000523483 CHIC2Q9UKJ5 165 aa14.1□□□□□ -0.15
SDCBP-212ENST00000523483 MYOM3Q5VTT5 1437 aa14.09□□□□□ -0.15
SDCBP-212ENST00000523483 FGD6Q6ZV73 1430 aa14.08□□□□□ -0.16
SDCBP-212ENST00000523483 WDR7Q9Y4E6 1490 aa14.07□□□□□ -0.16
SDCBP-212ENST00000523483 FAM69CQ0P6D2 419 aa14.07□□□□□ -0.16
SDCBP-212ENST00000523483 MYT1LQ9UL68 1186 aa14.05□□□□□ -0.16
SDCBP-212ENST00000523483 TRHP20396 242 aaPredicted RBP14.04□□□□□ -0.16
SDCBP-212ENST00000523483 RRBP1Q9P2E9 1410 aaKnown RBP14.04□□□□□ -0.16
SDCBP-212ENST00000523483 HNRNPMP52272 730 aaKnown RBP eCLIP14.03□□□□□ -0.16
SDCBP-212ENST00000523483 GPATCH8Q9UKJ3 1502 aaKnown RBP14.03□□□□□ -0.16
SDCBP-212ENST00000523483 ARHGAP5Q13017 1502 aa14.01□□□□□ -0.17
SDCBP-212ENST00000523483 EFCAB2Q5VUJ9 269 aa14.01□□□□□ -0.17
SDCBP-212ENST00000523483 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.01□□□□□ -0.17
SDCBP-212ENST00000523483 RRP7BPQ9NSQ0 103 aa14.01□□□□□ -0.17
SDCBP-212ENST00000523483 TTC37Q6PGP7 1564 aa14□□□□□ -0.17
SDCBP-212ENST00000523483 ABCC10Q5T3U5 1492 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms