RNA–Protein interactions for RNA: ENST00000523483.5

SDCBP-212, Transcript of syndecan binding protein, humanhuman

TSL 2 BASIC

Gene SDCBP, Length 3,589 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-212ENST00000523483 NISCHQ9Y2I1 1504 aa21.29■■□□□ 1
SDCBP-212ENST00000523483 CCDC180Q9P1Z9 1646 aa18.51■□□□□ 0.55
SDCBP-212ENST00000523483 DCAF8L2P0C7V8 631 aa18.17■□□□□ 0.5
SDCBP-212ENST00000523483 ABCC9O60706 1549 aa18.09■□□□□ 0.49
SDCBP-212ENST00000523483 ZCCHC6Q5VYS8 1495 aaKnown RBP17.8■□□□□ 0.44
SDCBP-212ENST00000523483 SHROOM4Q9ULL8 1493 aa17.59■□□□□ 0.41
SDCBP-212ENST00000523483 DCAF1Q9Y4B6 1507 aa17.43■□□□□ 0.38
SDCBP-212ENST00000523483 NACADO15069 1562 aa17.38■□□□□ 0.37
SDCBP-212ENST00000523483 RB1CC1Q8TDY2 1594 aa17.35■□□□□ 0.37
SDCBP-212ENST00000523483 MYO15BQ96JP2 1530 aa17.28■□□□□ 0.36
SDCBP-212ENST00000523483 SCRIBQ14160 1630 aa17.26■□□□□ 0.35
SDCBP-212ENST00000523483 PABPN1Q86U42 306 aaKnown RBP eCLIP17.12■□□□□ 0.33
SDCBP-212ENST00000523483 UNC13AQ9UPW8 1703 aa16.9■□□□□ 0.3
SDCBP-212ENST00000523483 SUPT5HO00267 1087 aaKnown RBP16.84■□□□□ 0.29
SDCBP-212ENST00000523483 BICRAQ9NZM4 1560 aa16.78■□□□□ 0.28
SDCBP-212ENST00000523483 CECR2Q9BXF3 1484 aa16.67■□□□□ 0.26
SDCBP-212ENST00000523483 MROH2BQ7Z745 1585 aa16.5■□□□□ 0.23
SDCBP-212ENST00000523483 RSF1Q96T23 1441 aaPredicted RBP16.48■□□□□ 0.23
SDCBP-212ENST00000523483 BAZ1AQ9NRL2 1556 aaPredicted RBP16.46■□□□□ 0.22
SDCBP-212ENST00000523483 SMARCA4P51532 1647 aa16.4■□□□□ 0.22
SDCBP-212ENST00000523483 EIF4G1Q04637 1599 aaKnown RBP16.37■□□□□ 0.21
SDCBP-212ENST00000523483 WIZO95785 1651 aa16.35■□□□□ 0.21
SDCBP-212ENST00000523483 ATAD2BQ9ULI0 1458 aa16.24■□□□□ 0.19
SDCBP-212ENST00000523483 CC2D2AQ9P2K1 1620 aa16.21■□□□□ 0.19
SDCBP-212ENST00000523483 BAZ1BQ9UIG0 1483 aaKnown RBP16.2■□□□□ 0.18
SDCBP-212ENST00000523483 DNAJC5BQ9UF47 199 aa16.18■□□□□ 0.18
SDCBP-212ENST00000523483 SMARCA2P51531 1590 aa16.18■□□□□ 0.18
SDCBP-212ENST00000523483 TOP2AP11388 1531 aaKnown RBP16.1■□□□□ 0.17
SDCBP-212ENST00000523483 NCAPD3P42695 1498 aa16.08■□□□□ 0.17
SDCBP-212ENST00000523483 PEG3Q9GZU2 1588 aa16.08■□□□□ 0.16
SDCBP-212ENST00000523483 CCDC88BA6NC98 1476 aa16.02■□□□□ 0.15
SDCBP-212ENST00000523483 HMGXB3Q12766 1538 aa15.99■□□□□ 0.15
SDCBP-212ENST00000523483 CHIC1Q5VXU3 224 aa15.8■□□□□ 0.12
SDCBP-212ENST00000523483 NESP48681 1621 aa15.76■□□□□ 0.11
SDCBP-212ENST00000523483 TRIM41Q8WV44 630 aa15.75■□□□□ 0.11
SDCBP-212ENST00000523483 CADPSQ9ULU8 1353 aa15.75■□□□□ 0.11
SDCBP-212ENST00000523483 CFTRP13569 1480 aa15.69■□□□□ 0.1
SDCBP-212ENST00000523483 ABCC8Q09428 1581 aa15.68■□□□□ 0.1
SDCBP-212ENST00000523483 FAM9AQ8IZU1 332 aaPredicted RBP15.62■□□□□ 0.09
SDCBP-212ENST00000523483 FANCD2Q9BXW9 1451 aa15.59■□□□□ 0.09
SDCBP-212ENST00000523483 WRNQ14191 1432 aaPredicted RBP eCLIP15.58■□□□□ 0.08
SDCBP-212ENST00000523483 PDS5BQ9NTI5 1447 aa15.57■□□□□ 0.08
SDCBP-212ENST00000523483 LAMC3Q9Y6N6 1575 aa15.56■□□□□ 0.08
SDCBP-212ENST00000523483 EHMT2Q96KQ7 1210 aa15.55■□□□□ 0.08
SDCBP-212ENST00000523483 ERCC6Q03468 1493 aa15.55■□□□□ 0.08
SDCBP-212ENST00000523483 CEP164Q9UPV0 1460 aa15.52■□□□□ 0.07
SDCBP-212ENST00000523483 SYNJ1O43426 1573 aa15.45■□□□□ 0.06
SDCBP-212ENST00000523483 KIF21AQ7Z4S6 1674 aa15.43■□□□□ 0.06
SDCBP-212ENST00000523483 CUX1P39880 1505 aa15.42■□□□□ 0.06
SDCBP-212ENST00000523483 PRDM2Q13029 1718 aa15.42■□□□□ 0.06
SDCBP-212ENST00000523483 URB2Q14146 1524 aaKnown RBP15.37■□□□□ 0.05
SDCBP-212ENST00000523483 TOPBP1Q92547 1522 aa15.35■□□□□ 0.05
SDCBP-212ENST00000523483 SOGA1O94964 1423 aa15.35■□□□□ 0.05
SDCBP-212ENST00000523483 FGD5Q6ZNL6 1462 aa15.34■□□□□ 0.05
SDCBP-212ENST00000523483 MRC2Q9UBG0 1479 aa15.34■□□□□ 0.05
SDCBP-212ENST00000523483 TOP2BQ02880 1626 aa15.34■□□□□ 0.05
SDCBP-212ENST00000523483 LOC105371045A0A1W2PR82 267 aa15.33■□□□□ 0.04
SDCBP-212ENST00000523483 DNMBPQ6XZF7 1577 aa15.31■□□□□ 0.04
SDCBP-212ENST00000523483 RAD54L2Q9Y4B4 1467 aa15.31■□□□□ 0.04
SDCBP-212ENST00000523483 RUSC2Q8N2Y8 1516 aa15.3■□□□□ 0.04
SDCBP-212ENST00000523483 POLA1P09884 1462 aaPredicted RBP15.28■□□□□ 0.04
SDCBP-212ENST00000523483 BIVM-ERCC5R4GMW8 1640 aa15.27■□□□□ 0.04
SDCBP-212ENST00000523483 CUX2O14529 1486 aa15.26■□□□□ 0.03
SDCBP-212ENST00000523483 TDRD9Q8NDG6 1382 aaKnown RBP15.25■□□□□ 0.03
SDCBP-212ENST00000523483 CSRNP3Q8WYN3 585 aa15.24■□□□□ 0.03
SDCBP-212ENST00000523483 KIF27Q86VH2 1401 aa15.2■□□□□ 0.02
SDCBP-212ENST00000523483 RANGAP1P46060 587 aaPredicted RBP15.19■□□□□ 0.02
SDCBP-212ENST00000523483 WDR62O43379 1518 aa15.19■□□□□ 0.02
SDCBP-212ENST00000523483 THOC2Q8NI27 1593 aaKnown RBP15.19■□□□□ 0.02
SDCBP-212ENST00000523483 UBTFP17480 764 aaKnown RBP15.19■□□□□ 0.02
SDCBP-212ENST00000523483 AQRO60306 1485 aaKnown RBP eCLIP15.15■□□□□ 0.02
SDCBP-212ENST00000523483 ZNF608Q9ULD9 1512 aaPredicted RBP15.12■□□□□ 0.01
SDCBP-212ENST00000523483 EEA1Q15075 1411 aa15.12■□□□□ 0.01
SDCBP-212ENST00000523483 FBLN2P98095 1184 aa15.11■□□□□ 0.01
SDCBP-212ENST00000523483 ABCA10Q8WWZ4 1543 aa15.11■□□□□ 0.01
SDCBP-212ENST00000523483 IFT140Q96RY7 1462 aa15.1■□□□□ 0.01
SDCBP-212ENST00000523483 GAPVD1Q14C86 1478 aa15.09■□□□□ 0.01
SDCBP-212ENST00000523483 IGF1RP08069 1367 aa15.07■□□□□ 0
SDCBP-212ENST00000523483 TARBP1Q13395 1621 aaKnown RBP15.05■□□□□ 0
SDCBP-212ENST00000523483 CARMIL1Q5VZK9 1371 aa15.04■□□□□ -0
SDCBP-212ENST00000523483 RAPGEF2Q9Y4G8 1499 aa15.02■□□□□ -0
SDCBP-212ENST00000523483 CHMP7Q8WUX9 453 aaPredicted RBP14.99□□□□□ -0.01
SDCBP-212ENST00000523483 GOLGA3Q08378 1498 aa14.99□□□□□ -0.01
SDCBP-212ENST00000523483 GRIN2BQ13224 1484 aa14.97□□□□□ -0.01
SDCBP-212ENST00000523483 EIF4G3O43432 1585 aaKnown RBP14.97□□□□□ -0.01
SDCBP-212ENST00000523483 WDR97A6NE52 1622 aa14.97□□□□□ -0.01
SDCBP-212ENST00000523483 ABCA5Q8WWZ7 1642 aa14.96□□□□□ -0.02
SDCBP-212ENST00000523483 SNAPC4Q5SXM2 1469 aa14.95□□□□□ -0.02
SDCBP-212ENST00000523483 PRXQ9BXM0 1461 aa14.94□□□□□ -0.02
SDCBP-212ENST00000523483 ERICH3Q5RHP9 1530 aa14.91□□□□□ -0.02
SDCBP-212ENST00000523483 TTBK1Q5TCY1 1321 aaPredicted RBP14.9□□□□□ -0.02
SDCBP-212ENST00000523483 PBRM1Q86U86 1689 aa14.89□□□□□ -0.03
SDCBP-212ENST00000523483 P3H3Q8IVL6 736 aa14.89□□□□□ -0.03
SDCBP-212ENST00000523483 KIF21BO75037 1637 aa14.89□□□□□ -0.03
SDCBP-212ENST00000523483 FHAD1B1AJZ9 1412 aa14.88□□□□□ -0.03
SDCBP-212ENST00000523483 TNIKQ9UKE5 1360 aa14.87□□□□□ -0.03
SDCBP-212ENST00000523483 CEP162Q5TB80 1403 aa14.85□□□□□ -0.03
SDCBP-212ENST00000523483 CUL7Q14999 1698 aa14.85□□□□□ -0.03
SDCBP-212ENST00000523483 MAGI1Q96QZ7 1491 aaPredicted RBP14.83□□□□□ -0.04
SDCBP-212ENST00000523483 ADAMTS12P58397 1594 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms