RNA–Protein interactions for RNA: ENST00000504318.5

PDLIM7-211, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 597 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-211ENST00000504318 JPH4Q96JJ6 628 aa24.29■■□□□ 1.48
PDLIM7-211ENST00000504318 KIAA0586Q9BVV6 1533 aa24.29■■□□□ 1.48
PDLIM7-211ENST00000504318 CARMIL1Q5VZK9 1371 aa24.27■■□□□ 1.48
PDLIM7-211ENST00000504318 TRHP20396 242 aaPredicted RBP24.18■■□□□ 1.46
PDLIM7-211ENST00000504318 RAPGEF2Q9Y4G8 1499 aa24.1■■□□□ 1.45
PDLIM7-211ENST00000504318 IQGAP2Q13576 1575 aa24.09■■□□□ 1.45
PDLIM7-211ENST00000504318 ADCY10Q96PN6 1610 aa24.09■■□□□ 1.45
PDLIM7-211ENST00000504318 KIF13AQ9H1H9 1805 aa24.03■■□□□ 1.44
PDLIM7-211ENST00000504318 DISP1Q96F81 1524 aa24.02■■□□□ 1.44
PDLIM7-211ENST00000504318 PRXQ9BXM0 1461 aa24■■□□□ 1.43
PDLIM7-211ENST00000504318 UGGT2Q9NYU1 1516 aa24■■□□□ 1.43
PDLIM7-211ENST00000504318 MAPKBP1O60336 1514 aa23.99■■□□□ 1.43
PDLIM7-211ENST00000504318 TNIKQ9UKE5 1360 aa23.95■■□□□ 1.42
PDLIM7-211ENST00000504318 CTTNBP2Q8WZ74 1663 aa23.94■■□□□ 1.42
PDLIM7-211ENST00000504318 PTPRGP23470 1445 aa23.93■■□□□ 1.42
PDLIM7-211ENST00000504318 CARMIL2Q6F5E8 1435 aa23.93■■□□□ 1.42
PDLIM7-211ENST00000504318 KIAA0556O60303 1618 aa23.92■■□□□ 1.42
PDLIM7-211ENST00000504318 ABCC10Q5T3U5 1492 aa23.91■■□□□ 1.42
PDLIM7-211ENST00000504318 DIP2BQ9P265 1576 aa23.89■■□□□ 1.41
PDLIM7-211ENST00000504318 UHRF1BP1LA0JNW5 1464 aa23.87■■□□□ 1.41
PDLIM7-211ENST00000504318 ABCC2Q92887 1545 aa23.84■■□□□ 1.41
PDLIM7-211ENST00000504318 UACAQ9BZF9 1416 aa23.8■■□□□ 1.4
PDLIM7-211ENST00000504318 NPM1P06748 294 aaKnown RBP eCLIP23.78■■□□□ 1.4
PDLIM7-211ENST00000504318 KDM5BQ9UGL1 1544 aa23.76■■□□□ 1.39
PDLIM7-211ENST00000504318 CSRNP3Q8WYN3 585 aa23.75■■□□□ 1.39
PDLIM7-211ENST00000504318 EEA1Q15075 1411 aa23.75■■□□□ 1.39
PDLIM7-211ENST00000504318 FAM69CQ0P6D2 419 aa23.74■■□□□ 1.39
PDLIM7-211ENST00000504318 TTBK1Q5TCY1 1321 aaPredicted RBP23.73■■□□□ 1.39
PDLIM7-211ENST00000504318 GOLGA3Q08378 1498 aa23.71■■□□□ 1.39
PDLIM7-211ENST00000504318 ASXL2Q76L83 1435 aa23.71■■□□□ 1.39
PDLIM7-211ENST00000504318 ABCA8O94911 1581 aa23.7■■□□□ 1.38
PDLIM7-211ENST00000504318 ZCCHC11Q5TAX3 1644 aaKnown RBP23.7■■□□□ 1.38
PDLIM7-211ENST00000504318 PLB1Q6P1J6 1458 aa23.68■■□□□ 1.38
PDLIM7-211ENST00000504318 GLI2P10070 1586 aa23.68■■□□□ 1.38
PDLIM7-211ENST00000504318 PPRC1Q5VV67 1664 aaKnown RBP23.67■■□□□ 1.38
PDLIM7-211ENST00000504318 SAMD9Q5K651 1589 aa23.66■■□□□ 1.38
PDLIM7-211ENST00000504318 TSPOAP1O95153 1857 aa23.63■■□□□ 1.37
PDLIM7-211ENST00000504318 EPRSP07814 1512 aaKnown RBP23.61■■□□□ 1.37
PDLIM7-211ENST00000504318 CHIC1Q5VXU3 224 aa23.61■■□□□ 1.37
PDLIM7-211ENST00000504318 KIF21BO75037 1637 aa23.61■■□□□ 1.37
PDLIM7-211ENST00000504318 MAP3K4Q9Y6R4 1608 aa23.58■■□□□ 1.36
PDLIM7-211ENST00000504318 WDR7Q9Y4E6 1490 aa23.54■■□□□ 1.36
PDLIM7-211ENST00000504318 KDM6BO15054 1643 aa23.52■■□□□ 1.36
PDLIM7-211ENST00000504318 FAM9AQ8IZU1 332 aaPredicted RBP23.5■■□□□ 1.35
PDLIM7-211ENST00000504318 P3H3Q8IVL6 736 aa23.46■■□□□ 1.35
PDLIM7-211ENST00000504318 ATP10BO94823 1461 aa23.45■■□□□ 1.34
PDLIM7-211ENST00000504318 RAPGEF6Q8TEU7 1601 aa23.44■■□□□ 1.34
PDLIM7-211ENST00000504318 COL17A1Q9UMD9 1497 aaPredicted RBP23.43■■□□□ 1.34
PDLIM7-211ENST00000504318 FHOD3Q2V2M9 1422 aa23.42■■□□□ 1.34
PDLIM7-211ENST00000504318 CFAP43Q8NDM7 1665 aa23.41■■□□□ 1.34
PDLIM7-211ENST00000504318 EFCAB5A4FU69 1503 aa23.4■■□□□ 1.34
PDLIM7-211ENST00000504318 NUP153P49790 1475 aaKnown RBP23.39■■□□□ 1.34
PDLIM7-211ENST00000504318 MAGI3Q5TCQ9 1506 aa23.37■■□□□ 1.33
PDLIM7-211ENST00000504318 TEX14Q8IWB6 1497 aa23.36■■□□□ 1.33
PDLIM7-211ENST00000504318 CD109Q6YHK3 1445 aa23.31■■□□□ 1.32
PDLIM7-211ENST00000504318 ABCA9Q8IUA7 1624 aa23.3■■□□□ 1.32
PDLIM7-211ENST00000504318 ARID3CA6NKF2 412 aa23.29■■□□□ 1.32
PDLIM7-211ENST00000504318 RANGAP1P46060 587 aaPredicted RBP23.28■■□□□ 1.32
PDLIM7-211ENST00000504318 ARHGAP35Q9NRY4 1499 aa23.28■■□□□ 1.32
PDLIM7-211ENST00000504318 KCNH8Q96L42 1107 aa23.27■■□□□ 1.32
PDLIM7-211ENST00000504318 KDM4FA0A1W2PPD8 638 aa23.2■■□□□ 1.3
PDLIM7-211ENST00000504318 UBTFP17480 764 aaKnown RBP23.2■■□□□ 1.3
PDLIM7-211ENST00000504318 EHMT2Q96KQ7 1210 aa23.19■■□□□ 1.3
PDLIM7-211ENST00000504318 ARAP3Q8WWN8 1544 aa23.18■■□□□ 1.3
PDLIM7-211ENST00000504318 AEBP2Q6ZN18 517 aaPredicted RBP23.17■■□□□ 1.3
PDLIM7-211ENST00000504318 CDK13Q14004 1512 aaKnown RBP23.17■■□□□ 1.3
PDLIM7-211ENST00000504318 FMN1Q68DA7 1419 aa23.13■■□□□ 1.29
PDLIM7-211ENST00000504318 LRRIQ1Q96JM4 1722 aa23.12■■□□□ 1.29
PDLIM7-211ENST00000504318 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.12■■□□□ 1.292e-10■■■□□ 15.1
PDLIM7-211ENST00000504318 HECW1Q76N89 1606 aa23.11■■□□□ 1.29
PDLIM7-211ENST00000504318 NEO1Q92859 1461 aa23.1■■□□□ 1.29
PDLIM7-211ENST00000504318 TTC37Q6PGP7 1564 aa23.1■■□□□ 1.29
PDLIM7-211ENST00000504318 FRMPD1Q5SYB0 1578 aa23.09■■□□□ 1.29
PDLIM7-211ENST00000504318 PHLDB1Q86UU1 1377 aa23.07■■□□□ 1.28
PDLIM7-211ENST00000504318 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.07■■□□□ 1.28
PDLIM7-211ENST00000504318 HNRNPUL2Q1KMD3 747 aaKnown RBP23.07■■□□□ 1.28
PDLIM7-211ENST00000504318 ADGRL1O94910 1474 aa23.06■■□□□ 1.28
PDLIM7-211ENST00000504318 PLEKHD1A6NEE1 506 aa23.06■■□□□ 1.28
PDLIM7-211ENST00000504318 PCF11O94913 1555 aaKnown RBP23.01■■□□□ 1.27
PDLIM7-211ENST00000504318 RICTORQ6R327 1708 aa22.99■■□□□ 1.27
PDLIM7-211ENST00000504318 KIF14Q15058 1648 aa22.98■■□□□ 1.27
PDLIM7-211ENST00000504318 CASKIN1Q8WXD9 1431 aa22.97■■□□□ 1.27
PDLIM7-211ENST00000504318 FANCAO15360 1455 aa22.96■■□□□ 1.27
PDLIM7-211ENST00000504318 CFAP74Q9C0B2 1584 aa22.96■■□□□ 1.27
PDLIM7-211ENST00000504318 RAPGEF3O95398 923 aa22.95■■□□□ 1.26
PDLIM7-211ENST00000504318 AKNAQ7Z591 1439 aa22.95■■□□□ 1.26
PDLIM7-211ENST00000504318 PLCH2O75038 1416 aa22.93■■□□□ 1.26
PDLIM7-211ENST00000504318 TROQ12816 1431 aaPredicted RBP22.93■■□□□ 1.26
PDLIM7-211ENST00000504318 CLIP1P30622 1438 aa22.91■■□□□ 1.26
PDLIM7-211ENST00000504318 MYO5CQ9NQX4 1742 aa22.9■■□□□ 1.26
PDLIM7-211ENST00000504318 ZMYM4Q5VZL5 1548 aa22.89■■□□□ 1.26
PDLIM7-211ENST00000504318 DENND4BO75064 1496 aaPredicted RBP22.89■■□□□ 1.25
PDLIM7-211ENST00000504318 FYCO1Q9BQS8 1478 aa22.89■■□□□ 1.25
PDLIM7-211ENST00000504318 CCDC18Q5T9S5 1454 aa22.88■■□□□ 1.25
PDLIM7-211ENST00000504318 ARHGEF40Q8TER5 1519 aa22.87■■□□□ 1.25
PDLIM7-211ENST00000504318 ATP1B4Q9UN42 357 aaPredicted RBP22.86■■□□□ 1.25
PDLIM7-211ENST00000504318 ADAMTSL3P82987 1691 aa22.84■■□□□ 1.25
PDLIM7-211ENST00000504318 SIGLEC1Q9BZZ2 1709 aa22.84■■□□□ 1.25
PDLIM7-211ENST00000504318 CDC42BPBQ9Y5S2 1711 aa22.83■■□□□ 1.25
PDLIM7-211ENST00000504318 CDK11AQ9UQ88 783 aaPredicted RBP22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms