RNA–Protein interactions for RNA: ENST00000504318.5

PDLIM7-211, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 597 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-211ENST00000504318 HNRNPKP61978 463 aaKnown RBP eCLIP14.1□□□□□ -0.151e-16■■■■■ 57.8
PDLIM7-211ENST00000504318 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.86□□□□□ -0.357e-8■■■■■ 55
PDLIM7-211ENST00000504318 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.09■□□□□ 0.332e-6■■■■■ 52.9
PDLIM7-211ENST00000504318 SF3A3Q12874 501 aaKnown RBP eCLIP12.25□□□□□ -0.452e-7■■■■■ 49.4
PDLIM7-211ENST00000504318 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.84□□□□□ -0.038e-7■■■■■ 46.3
PDLIM7-211ENST00000504318 PCBP1Q15365 356 aaKnown RBP eCLIP15.56■□□□□ 0.084e-10■■■■■ 32.7
PDLIM7-211ENST00000504318 HNRNPMP52272 730 aaKnown RBP eCLIP22.42■■□□□ 1.184e-8■■■■■ 27.6
PDLIM7-211ENST00000504318 AQRO60306 1485 aaKnown RBP eCLIP25.29■■□□□ 1.644e-10■■■■□ 26.1
PDLIM7-211ENST00000504318 SF3B4Q15427 424 aaKnown RBP eCLIP12.64□□□□□ -0.399e-8■■■■□ 22.3
PDLIM7-211ENST00000504318 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.77■□□□□ 0.288e-9■■■■□ 19.6
PDLIM7-211ENST00000504318 EFTUD2Q15029 972 aaKnown RBP eCLIP13.16□□□□□ -0.33e-28■■■□□ 19.1
PDLIM7-211ENST00000504318 ZRANB2O95218 330 aaKnown RBP eCLIP13.85□□□□□ -0.192e-6■■■□□ 18.6
PDLIM7-211ENST00000504318 RBFOX2O43251 390 aaKnown RBP eCLIP10.64□□□□□ -0.718e-13■■■□□ 18.5
PDLIM7-211ENST00000504318 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.1□□□□□ -0.472e-7■■■□□ 18.1
PDLIM7-211ENST00000504318 PPIGQ13427 754 aaKnown RBP eCLIP16.2■□□□□ 0.182e-7■■■□□ 18
PDLIM7-211ENST00000504318 PCBP2Q15366 365 aaKnown RBP eCLIP13.05□□□□□ -0.321e-6■■■□□ 17
PDLIM7-211ENST00000504318 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.9■□□□□ 0.35e-11■■■□□ 17
PDLIM7-211ENST00000504318 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.25■□□□□ 0.199e-10■■■□□ 15.9
PDLIM7-211ENST00000504318 U2AF2P26368 475 aaKnown RBP eCLIP15.63■□□□□ 0.097e-7■■■□□ 15.8
PDLIM7-211ENST00000504318 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.12■■□□□ 1.292e-10■■■□□ 15.1
PDLIM7-211ENST00000504318 U2AF1Q01081 240 aaKnown RBP eCLIP18.75■□□□□ 0.594e-6■■□□□ 12.1
PDLIM7-211ENST00000504318 AARSP49588 968 aaKnown RBP eCLIP15.28■□□□□ 0.044e-9■■□□□ 11.9
PDLIM7-211ENST00000504318 TIA1P31483 386 aaKnown RBP eCLIP12.82□□□□□ -0.361e-6■□□□□ 11.1
PDLIM7-211ENST00000504318 PUM1Q14671 1186 aaKnown RBP eCLIP14.67□□□□□ -0.063e-7■□□□□ 10.6
PDLIM7-211ENST00000504318 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.07□□□□□ -0.166e-7■□□□□ 9.2
PDLIM7-211ENST00000504318 NCBP2P52298 156 aaKnown RBP eCLIP12.72□□□□□ -0.372e-6■□□□□ 8.3
Retrieved 26 of 26 RNA–protein pairs in 16.8 ms