RNA–Protein interactions for RNA: ENST00000504318.5

PDLIM7-211, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 597 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-211ENST00000504318 NISCHQ9Y2I1 1504 aa35.06■■■■□ 3.2
PDLIM7-211ENST00000504318 CCDC180Q9P1Z9 1646 aa31.35■■■□□ 2.61
PDLIM7-211ENST00000504318 ABCC9O60706 1549 aa30.93■■■□□ 2.54
PDLIM7-211ENST00000504318 RB1CC1Q8TDY2 1594 aa29.6■■■□□ 2.33
PDLIM7-211ENST00000504318 NACADO15069 1562 aa29.51■■■□□ 2.31
PDLIM7-211ENST00000504318 MYO15BQ96JP2 1530 aa29.29■■■□□ 2.28
PDLIM7-211ENST00000504318 ZCCHC6Q5VYS8 1495 aaKnown RBP29.17■■■□□ 2.26
PDLIM7-211ENST00000504318 DCAF8L2P0C7V8 631 aa29.14■■■□□ 2.26
PDLIM7-211ENST00000504318 UNC13AQ9UPW8 1703 aa29.08■■■□□ 2.25
PDLIM7-211ENST00000504318 DCAF1Q9Y4B6 1507 aa29.03■■■□□ 2.24
PDLIM7-211ENST00000504318 BICRAQ9NZM4 1560 aa28.87■■■□□ 2.21
PDLIM7-211ENST00000504318 DNAJC5BQ9UF47 199 aa28.82■■■□□ 2.2
PDLIM7-211ENST00000504318 PABPN1Q86U42 306 aaKnown RBP eCLIP28.79■■■□□ 2.2
PDLIM7-211ENST00000504318 SCRIBQ14160 1630 aa28.51■■■□□ 2.15
PDLIM7-211ENST00000504318 SHROOM4Q9ULL8 1493 aa28.44■■■□□ 2.14
PDLIM7-211ENST00000504318 EIF4G1Q04637 1599 aaKnown RBP28.05■■■□□ 2.08
PDLIM7-211ENST00000504318 CC2D2AQ9P2K1 1620 aa28.02■■■□□ 2.08
PDLIM7-211ENST00000504318 CECR2Q9BXF3 1484 aa27.83■■■□□ 2.05
PDLIM7-211ENST00000504318 SMARCA4P51532 1647 aa27.28■■□□□ 1.96
PDLIM7-211ENST00000504318 NCAPD3P42695 1498 aa27.26■■□□□ 1.95
PDLIM7-211ENST00000504318 ATAD2BQ9ULI0 1458 aa27.22■■□□□ 1.95
PDLIM7-211ENST00000504318 BAZ1AQ9NRL2 1556 aaPredicted RBP27.15■■□□□ 1.94
PDLIM7-211ENST00000504318 SMARCA2P51531 1590 aa27.11■■□□□ 1.93
PDLIM7-211ENST00000504318 HMGXB3Q12766 1538 aa27.11■■□□□ 1.93
PDLIM7-211ENST00000504318 PEG3Q9GZU2 1588 aa27.09■■□□□ 1.93
PDLIM7-211ENST00000504318 MROH2BQ7Z745 1585 aa27.03■■□□□ 1.92
PDLIM7-211ENST00000504318 BAZ1BQ9UIG0 1483 aaKnown RBP26.9■■□□□ 1.9
PDLIM7-211ENST00000504318 NESP48681 1621 aa26.72■■□□□ 1.87
PDLIM7-211ENST00000504318 WIZO95785 1651 aa26.71■■□□□ 1.87
PDLIM7-211ENST00000504318 ERCC6Q03468 1493 aa26.59■■□□□ 1.85
PDLIM7-211ENST00000504318 LAMC3Q9Y6N6 1575 aa26.57■■□□□ 1.84
PDLIM7-211ENST00000504318 RSF1Q96T23 1441 aaPredicted RBP26.56■■□□□ 1.84
PDLIM7-211ENST00000504318 CUX2O14529 1486 aa26.55■■□□□ 1.84
PDLIM7-211ENST00000504318 THOC2Q8NI27 1593 aaKnown RBP26.45■■□□□ 1.82
PDLIM7-211ENST00000504318 KIF21AQ7Z4S6 1674 aa26.41■■□□□ 1.82
PDLIM7-211ENST00000504318 CADPSQ9ULU8 1353 aa26.4■■□□□ 1.82
PDLIM7-211ENST00000504318 TOP2AP11388 1531 aaKnown RBP26.39■■□□□ 1.81
PDLIM7-211ENST00000504318 PDS5BQ9NTI5 1447 aa26.32■■□□□ 1.8
PDLIM7-211ENST00000504318 CFTRP13569 1480 aa26.22■■□□□ 1.79
PDLIM7-211ENST00000504318 DNAJC5Q9H3Z4 198 aa26.14■■□□□ 1.78
PDLIM7-211ENST00000504318 MRC2Q9UBG0 1479 aa26.14■■□□□ 1.78
PDLIM7-211ENST00000504318 WDR62O43379 1518 aa26.14■■□□□ 1.77
PDLIM7-211ENST00000504318 FANCD2Q9BXW9 1451 aa26.09■■□□□ 1.77
PDLIM7-211ENST00000504318 CCDC88BA6NC98 1476 aa26.07■■□□□ 1.76
PDLIM7-211ENST00000504318 CEP164Q9UPV0 1460 aa26.06■■□□□ 1.76
PDLIM7-211ENST00000504318 PRDM2Q13029 1718 aa26.02■■□□□ 1.76
PDLIM7-211ENST00000504318 URB2Q14146 1524 aaKnown RBP25.92■■□□□ 1.74
PDLIM7-211ENST00000504318 TOPBP1Q92547 1522 aa25.67■■□□□ 1.7
PDLIM7-211ENST00000504318 DNMBPQ6XZF7 1577 aa25.6■■□□□ 1.69
PDLIM7-211ENST00000504318 ABCC8Q09428 1581 aa25.56■■□□□ 1.68
PDLIM7-211ENST00000504318 IFT140Q96RY7 1462 aa25.55■■□□□ 1.68
PDLIM7-211ENST00000504318 ZNF608Q9ULD9 1512 aaPredicted RBP25.53■■□□□ 1.68
PDLIM7-211ENST00000504318 TARBP1Q13395 1621 aaKnown RBP25.48■■□□□ 1.67
PDLIM7-211ENST00000504318 POLA1P09884 1462 aaPredicted RBP25.43■■□□□ 1.66
PDLIM7-211ENST00000504318 EIF4G3O43432 1585 aaKnown RBP25.41■■□□□ 1.66
PDLIM7-211ENST00000504318 SUPT5HO00267 1087 aaKnown RBP25.41■■□□□ 1.66
PDLIM7-211ENST00000504318 CUX1P39880 1505 aa25.37■■□□□ 1.65
PDLIM7-211ENST00000504318 RAD54L2Q9Y4B4 1467 aa25.31■■□□□ 1.64
PDLIM7-211ENST00000504318 AQRO60306 1485 aaKnown RBP eCLIP25.29■■□□□ 1.644e-10■■■■□ 26.1
PDLIM7-211ENST00000504318 FGD5Q6ZNL6 1462 aa25.29■■□□□ 1.64
PDLIM7-211ENST00000504318 OSCARQ8IYS5 282 aa25.28■■□□□ 1.64
PDLIM7-211ENST00000504318 SOGA1O94964 1423 aa25.24■■□□□ 1.63
PDLIM7-211ENST00000504318 WDR97A6NE52 1622 aa25.21■■□□□ 1.63
PDLIM7-211ENST00000504318 CHD1O14646 1710 aa25.16■■□□□ 1.62
PDLIM7-211ENST00000504318 TDRD9Q8NDG6 1382 aaKnown RBP25.16■■□□□ 1.62
PDLIM7-211ENST00000504318 BIVM-ERCC5R4GMW8 1640 aa25.07■■□□□ 1.6
PDLIM7-211ENST00000504318 ABCA10Q8WWZ4 1543 aa25.07■■□□□ 1.6
PDLIM7-211ENST00000504318 RIMBP3CA6NJZ7 1639 aa25.06■■□□□ 1.6
PDLIM7-211ENST00000504318 RIMBP3BA6NNM3 1639 aa25.06■■□□□ 1.6
PDLIM7-211ENST00000504318 RIMBP3Q9UFD9 1639 aa25.06■■□□□ 1.6
PDLIM7-211ENST00000504318 SNAPC4Q5SXM2 1469 aa25.05■■□□□ 1.6
PDLIM7-211ENST00000504318 TOP2BQ02880 1626 aa25.04■■□□□ 1.6
PDLIM7-211ENST00000504318 SYNJ1O43426 1573 aa25.04■■□□□ 1.6
PDLIM7-211ENST00000504318 ABCA5Q8WWZ7 1642 aa25.04■■□□□ 1.6
PDLIM7-211ENST00000504318 GRIN2BQ13224 1484 aa25.01■■□□□ 1.59
PDLIM7-211ENST00000504318 MAGI1Q96QZ7 1491 aaPredicted RBP25■■□□□ 1.59
PDLIM7-211ENST00000504318 ARHGEF11O15085 1522 aa25■■□□□ 1.59
PDLIM7-211ENST00000504318 PBRM1Q86U86 1689 aa25■■□□□ 1.59
PDLIM7-211ENST00000504318 WRNQ14191 1432 aaPredicted RBP eCLIP24.99■■□□□ 1.59
PDLIM7-211ENST00000504318 TRIM41Q8WV44 630 aa24.98■■□□□ 1.59
PDLIM7-211ENST00000504318 GAPVD1Q14C86 1478 aa24.96■■□□□ 1.59
PDLIM7-211ENST00000504318 CLASP1Q7Z460 1538 aa24.92■■□□□ 1.58
PDLIM7-211ENST00000504318 SYNJ2O15056 1496 aa24.91■■□□□ 1.58
PDLIM7-211ENST00000504318 FBLN2P98095 1184 aa24.87■■□□□ 1.57
PDLIM7-211ENST00000504318 ARAP1Q96P48 1450 aa24.81■■□□□ 1.56
PDLIM7-211ENST00000504318 ADAMTS12P58397 1594 aa24.8■■□□□ 1.56
PDLIM7-211ENST00000504318 CHMP7Q8WUX9 453 aaPredicted RBP24.79■■□□□ 1.56
PDLIM7-211ENST00000504318 ERICH3Q5RHP9 1530 aa24.73■■□□□ 1.55
PDLIM7-211ENST00000504318 GRIN2AQ12879 1464 aa24.72■■□□□ 1.55
PDLIM7-211ENST00000504318 NUP160Q12769 1436 aa24.68■■□□□ 1.54
PDLIM7-211ENST00000504318 CEP170Q5SW79 1584 aa24.67■■□□□ 1.54
PDLIM7-211ENST00000504318 FHAD1B1AJZ9 1412 aa24.66■■□□□ 1.54
PDLIM7-211ENST00000504318 CYB5RLQ6IPT4 315 aa24.65■■□□□ 1.54
PDLIM7-211ENST00000504318 SHROOM2Q13796 1616 aa24.57■■□□□ 1.52
PDLIM7-211ENST00000504318 ERCC6L2Q5T890 1561 aa24.56■■□□□ 1.52
PDLIM7-211ENST00000504318 IGF1RP08069 1367 aa24.48■■□□□ 1.51
PDLIM7-211ENST00000504318 KIF27Q86VH2 1401 aa24.45■■□□□ 1.51
PDLIM7-211ENST00000504318 RUSC2Q8N2Y8 1516 aa24.45■■□□□ 1.5
PDLIM7-211ENST00000504318 CUL7Q14999 1698 aa24.42■■□□□ 1.5
PDLIM7-211ENST00000504318 PRG4Q92954 1404 aaPredicted RBP24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms