RNA–Protein interactions for RNA: ENST00000503338.5

TOPBP1-202, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 3

Gene TOPBP1, Length 618 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-202ENST00000503338 GRIN2AQ12879 1464 aa12.82□□□□□ -0.36
TOPBP1-202ENST00000503338 CTTNBP2Q8WZ74 1663 aa12.81□□□□□ -0.36
TOPBP1-202ENST00000503338 EFCAB5A4FU69 1503 aa12.78□□□□□ -0.36
TOPBP1-202ENST00000503338 KIAA0586Q9BVV6 1533 aa12.78□□□□□ -0.36
TOPBP1-202ENST00000503338 VPS8Q8N3P4 1428 aa12.77□□□□□ -0.37
TOPBP1-202ENST00000503338 ARHGAP35Q9NRY4 1499 aa12.76□□□□□ -0.37
TOPBP1-202ENST00000503338 RANGAP1P46060 587 aaPredicted RBP12.75□□□□□ -0.37
TOPBP1-202ENST00000503338 FBLN2P98095 1184 aa12.75□□□□□ -0.37
TOPBP1-202ENST00000503338 NUP160Q12769 1436 aa12.75□□□□□ -0.37
TOPBP1-202ENST00000503338 IQGAP2Q13576 1575 aa12.75□□□□□ -0.37
TOPBP1-202ENST00000503338 ARAP1Q96P48 1450 aa12.72□□□□□ -0.37
TOPBP1-202ENST00000503338 UGGT2Q9NYU1 1516 aa12.71□□□□□ -0.38
TOPBP1-202ENST00000503338 APLP2Q06481 763 aa12.7□□□□□ -0.38
TOPBP1-202ENST00000503338 FMN1Q68DA7 1419 aa12.7□□□□□ -0.38
TOPBP1-202ENST00000503338 SAMD9Q5K651 1589 aa12.69□□□□□ -0.38
TOPBP1-202ENST00000503338 CEP170Q5SW79 1584 aa12.69□□□□□ -0.38
TOPBP1-202ENST00000503338 CARMIL2Q6F5E8 1435 aa12.65□□□□□ -0.38
TOPBP1-202ENST00000503338 JPH4Q96JJ6 628 aa12.65□□□□□ -0.38
TOPBP1-202ENST00000503338 FHOD3Q2V2M9 1422 aa12.64□□□□□ -0.39
TOPBP1-202ENST00000503338 CHD1O14646 1710 aa12.64□□□□□ -0.39
TOPBP1-202ENST00000503338 P3H3Q8IVL6 736 aa12.62□□□□□ -0.39
TOPBP1-202ENST00000503338 MAP3K1Q13233 1512 aa12.62□□□□□ -0.39
TOPBP1-202ENST00000503338 CASKIN1Q8WXD9 1431 aa12.62□□□□□ -0.39
TOPBP1-202ENST00000503338 FYCO1Q9BQS8 1478 aa12.61□□□□□ -0.39
TOPBP1-202ENST00000503338 KIAA0556O60303 1618 aa12.61□□□□□ -0.39
TOPBP1-202ENST00000503338 DISP1Q96F81 1524 aa12.6□□□□□ -0.39
TOPBP1-202ENST00000503338 TRIM26Q12899 539 aaPredicted RBP12.58□□□□□ -0.4
TOPBP1-202ENST00000503338 CLASP1Q7Z460 1538 aa12.56□□□□□ -0.4
TOPBP1-202ENST00000503338 SHROOM2Q13796 1616 aa12.55□□□□□ -0.4
TOPBP1-202ENST00000503338 PRG4Q92954 1404 aaPredicted RBP12.55□□□□□ -0.4
TOPBP1-202ENST00000503338 OSCARQ8IYS5 282 aa12.55□□□□□ -0.4
TOPBP1-202ENST00000503338 PCF11O94913 1555 aaKnown RBP12.55□□□□□ -0.4
TOPBP1-202ENST00000503338 CCDC18Q5T9S5 1454 aa12.53□□□□□ -0.4
TOPBP1-202ENST00000503338 TIAM1Q13009 1591 aa12.52□□□□□ -0.4
TOPBP1-202ENST00000503338 HECW1Q76N89 1606 aa12.52□□□□□ -0.4
TOPBP1-202ENST00000503338 ATP1B4Q9UN42 357 aaPredicted RBP12.52□□□□□ -0.41
TOPBP1-202ENST00000503338 PTPRGP23470 1445 aa12.5□□□□□ -0.41
TOPBP1-202ENST00000503338 CFAP43Q8NDM7 1665 aa12.48□□□□□ -0.41
TOPBP1-202ENST00000503338 LRRC9Q6ZRR7 1453 aa12.48□□□□□ -0.41
TOPBP1-202ENST00000503338 PPARGC1BQ86YN6 1023 aaKnown RBP12.48□□□□□ -0.41
TOPBP1-202ENST00000503338 RAPGEF6Q8TEU7 1601 aa12.48□□□□□ -0.41
TOPBP1-202ENST00000503338 CDK11AQ9UQ88 783 aaPredicted RBP12.47□□□□□ -0.41
TOPBP1-202ENST00000503338 EPRSP07814 1512 aaKnown RBP12.46□□□□□ -0.42
TOPBP1-202ENST00000503338 MTUS2Q5JR59 1369 aa12.45□□□□□ -0.42
TOPBP1-202ENST00000503338 KANK4Q5T7N3 995 aaPredicted RBP12.45□□□□□ -0.42
TOPBP1-202ENST00000503338 PCGF6Q9BYE7 350 aa12.45□□□□□ -0.42
TOPBP1-202ENST00000503338 ABCA8O94911 1581 aa12.44□□□□□ -0.42
TOPBP1-202ENST00000503338 NUP153P49790 1475 aaKnown RBP12.43□□□□□ -0.42
TOPBP1-202ENST00000503338 UACAQ9BZF9 1416 aa12.43□□□□□ -0.42
TOPBP1-202ENST00000503338 EHBP1L1Q8N3D4 1523 aa12.42□□□□□ -0.42
TOPBP1-202ENST00000503338 TTBK1Q5TCY1 1321 aaPredicted RBP12.42□□□□□ -0.42
TOPBP1-202ENST00000503338 PLB1Q6P1J6 1458 aa12.42□□□□□ -0.42
TOPBP1-202ENST00000503338 UHRF1BP1LA0JNW5 1464 aa12.39□□□□□ -0.43
TOPBP1-202ENST00000503338 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.38□□□□□ -0.43
TOPBP1-202ENST00000503338 HNRNPUL2Q1KMD3 747 aaKnown RBP12.38□□□□□ -0.43
TOPBP1-202ENST00000503338 ERCC6L2Q5T890 1561 aa12.38□□□□□ -0.43
TOPBP1-202ENST00000503338 RRBP1Q9P2E9 1410 aaKnown RBP12.37□□□□□ -0.43
TOPBP1-202ENST00000503338 CDK13Q14004 1512 aaKnown RBP12.37□□□□□ -0.43
TOPBP1-202ENST00000503338 ABCC2Q92887 1545 aa12.37□□□□□ -0.43
TOPBP1-202ENST00000503338 LRRIQ1Q96JM4 1722 aa12.37□□□□□ -0.43
TOPBP1-202ENST00000503338 PLEKHD1A6NEE1 506 aa12.36□□□□□ -0.43
TOPBP1-202ENST00000503338 SUPT6HQ7KZ85 1726 aaKnown RBP12.36□□□□□ -0.43
TOPBP1-202ENST00000503338 TROQ12816 1431 aaPredicted RBP12.36□□□□□ -0.43
TOPBP1-202ENST00000503338 ATP10BO94823 1461 aa12.35□□□□□ -0.43
TOPBP1-202ENST00000503338 CCNB3Q8WWL7 1395 aa12.34□□□□□ -0.43
TOPBP1-202ENST00000503338 NCOA2Q15596 1464 aa12.34□□□□□ -0.43
TOPBP1-202ENST00000503338 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.33□□□□□ -0.44
TOPBP1-202ENST00000503338 ARHGEF11O15085 1522 aa12.32□□□□□ -0.44
TOPBP1-202ENST00000503338 PHLDB1Q86UU1 1377 aa12.32□□□□□ -0.44
TOPBP1-202ENST00000503338 MAGI3Q5TCQ9 1506 aa12.32□□□□□ -0.44
TOPBP1-202ENST00000503338 MYOM3Q5VTT5 1437 aa12.31□□□□□ -0.44
TOPBP1-202ENST00000503338 ARID3CA6NKF2 412 aa12.31□□□□□ -0.44
TOPBP1-202ENST00000503338 KDM5BQ9UGL1 1544 aa12.31□□□□□ -0.44
TOPBP1-202ENST00000503338 SENP3Q9H4L4 574 aaPredicted RBP12.3□□□□□ -0.44
TOPBP1-202ENST00000503338 MIA2Q96PC5 1412 aa12.29□□□□□ -0.44
TOPBP1-202ENST00000503338 FGD6Q6ZV73 1430 aa12.28□□□□□ -0.44
TOPBP1-202ENST00000503338 ADCY10Q96PN6 1610 aa12.28□□□□□ -0.44
TOPBP1-202ENST00000503338 KIF14Q15058 1648 aa12.26□□□□□ -0.45
TOPBP1-202ENST00000503338 NPM1P06748 294 aaKnown RBP eCLIP12.26□□□□□ -0.45
TOPBP1-202ENST00000503338 FAM50AQ14320 339 aaKnown RBP12.24□□□□□ -0.45
TOPBP1-202ENST00000503338 ZCCHC11Q5TAX3 1644 aaKnown RBP12.23□□□□□ -0.45
TOPBP1-202ENST00000503338 TCOF1Q13428 1488 aaKnown RBP12.23□□□□□ -0.45
TOPBP1-202ENST00000503338 ITSN2Q9NZM3 1697 aa12.22□□□□□ -0.45
TOPBP1-202ENST00000503338 ABCC10Q5T3U5 1492 aa12.21□□□□□ -0.45
TOPBP1-202ENST00000503338 CFDP1Q9UEE9 299 aaPredicted RBP12.21□□□□□ -0.45
TOPBP1-202ENST00000503338 GPATCH8Q9UKJ3 1502 aaKnown RBP12.21□□□□□ -0.46
TOPBP1-202ENST00000503338 PTPN23Q9H3S7 1636 aa12.2□□□□□ -0.46
TOPBP1-202ENST00000503338 WDR7Q9Y4E6 1490 aa12.2□□□□□ -0.46
TOPBP1-202ENST00000503338 RIMBP3CA6NJZ7 1639 aa12.19□□□□□ -0.46
TOPBP1-202ENST00000503338 RIMBP3BA6NNM3 1639 aa12.19□□□□□ -0.46
TOPBP1-202ENST00000503338 RIMBP3Q9UFD9 1639 aa12.19□□□□□ -0.46
TOPBP1-202ENST00000503338 ASXL2Q76L83 1435 aa12.17□□□□□ -0.46
TOPBP1-202ENST00000503338 CYB5RLQ6IPT4 315 aa12.16□□□□□ -0.46
TOPBP1-202ENST00000503338 HRCP23327 699 aa12.15□□□□□ -0.46
TOPBP1-202ENST00000503338 RSPH4AQ5TD94 716 aa12.15□□□□□ -0.46
TOPBP1-202ENST00000503338 KCNH8Q96L42 1107 aa12.15□□□□□ -0.46
TOPBP1-202ENST00000503338 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.15□□□□□ -0.46
TOPBP1-202ENST00000503338 ACIN1Q9UKV3 1341 aaKnown RBP12.14□□□□□ -0.47
TOPBP1-202ENST00000503338 ITGAEP38570 1179 aa12.14□□□□□ -0.47
TOPBP1-202ENST00000503338 ARAP3Q8WWN8 1544 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms