RNA–Protein interactions for RNA: ENST00000503338.5

TOPBP1-202, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 3

Gene TOPBP1, Length 618 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-202ENST00000503338 NISCHQ9Y2I1 1504 aa18.59■□□□□ 0.57
TOPBP1-202ENST00000503338 CCDC180Q9P1Z9 1646 aa16.29■□□□□ 0.2
TOPBP1-202ENST00000503338 ZCCHC6Q5VYS8 1495 aaKnown RBP15.59■□□□□ 0.09
TOPBP1-202ENST00000503338 DCAF1Q9Y4B6 1507 aa15.45■□□□□ 0.06
TOPBP1-202ENST00000503338 ABCC9O60706 1549 aa15.4■□□□□ 0.06
TOPBP1-202ENST00000503338 MYO15BQ96JP2 1530 aa15.34■□□□□ 0.05
TOPBP1-202ENST00000503338 DCAF8L2P0C7V8 631 aa15.32■□□□□ 0.04
TOPBP1-202ENST00000503338 NACADO15069 1562 aa15.23■□□□□ 0.03
TOPBP1-202ENST00000503338 RB1CC1Q8TDY2 1594 aa15.1■□□□□ 0.01
TOPBP1-202ENST00000503338 SHROOM4Q9ULL8 1493 aa14.95□□□□□ -0.02
TOPBP1-202ENST00000503338 SCRIBQ14160 1630 aa14.85□□□□□ -0.03
TOPBP1-202ENST00000503338 AEBP2Q6ZN18 517 aaPredicted RBP14.7□□□□□ -0.06
TOPBP1-202ENST00000503338 UNC13AQ9UPW8 1703 aa14.63□□□□□ -0.07
TOPBP1-202ENST00000503338 BICRAQ9NZM4 1560 aa14.55□□□□□ -0.08
TOPBP1-202ENST00000503338 CHIC1Q5VXU3 224 aa14.51□□□□□ -0.09
TOPBP1-202ENST00000503338 PABPN1Q86U42 306 aaKnown RBP eCLIP14.48□□□□□ -0.09
TOPBP1-202ENST00000503338 BAZ1AQ9NRL2 1556 aaPredicted RBP14.39□□□□□ -0.11
TOPBP1-202ENST00000503338 SUPT5HO00267 1087 aaKnown RBP14.38□□□□□ -0.11
TOPBP1-202ENST00000503338 CECR2Q9BXF3 1484 aa14.38□□□□□ -0.11
TOPBP1-202ENST00000503338 RSF1Q96T23 1441 aaPredicted RBP14.35□□□□□ -0.11
TOPBP1-202ENST00000503338 MROH2BQ7Z745 1585 aa14.3□□□□□ -0.12
TOPBP1-202ENST00000503338 SMARCA4P51532 1647 aa14.28□□□□□ -0.12
TOPBP1-202ENST00000503338 PEG3Q9GZU2 1588 aa14.17□□□□□ -0.14
TOPBP1-202ENST00000503338 EIF4G1Q04637 1599 aaKnown RBP14.16□□□□□ -0.14
TOPBP1-202ENST00000503338 WIZO95785 1651 aa14.14□□□□□ -0.15
TOPBP1-202ENST00000503338 SMARCA2P51531 1590 aa14.14□□□□□ -0.15
TOPBP1-202ENST00000503338 ATAD2BQ9ULI0 1458 aa14.1□□□□□ -0.15
TOPBP1-202ENST00000503338 TOP2AP11388 1531 aaKnown RBP14.09□□□□□ -0.15
TOPBP1-202ENST00000503338 NCAPD3P42695 1498 aa14.04□□□□□ -0.16
TOPBP1-202ENST00000503338 BAZ1BQ9UIG0 1483 aaKnown RBP14.03□□□□□ -0.16
TOPBP1-202ENST00000503338 HMGXB3Q12766 1538 aa14.01□□□□□ -0.17
TOPBP1-202ENST00000503338 CC2D2AQ9P2K1 1620 aa13.95□□□□□ -0.18
TOPBP1-202ENST00000503338 CCDC88BA6NC98 1476 aa13.9□□□□□ -0.18
TOPBP1-202ENST00000503338 CFTRP13569 1480 aa13.68□□□□□ -0.22
TOPBP1-202ENST00000503338 CADPSQ9ULU8 1353 aa13.67□□□□□ -0.22
TOPBP1-202ENST00000503338 DNAJC5BQ9UF47 199 aa13.62□□□□□ -0.23
TOPBP1-202ENST00000503338 TRIM41Q8WV44 630 aa13.6□□□□□ -0.23
TOPBP1-202ENST00000503338 LAMC3Q9Y6N6 1575 aa13.58□□□□□ -0.24
TOPBP1-202ENST00000503338 PRDM2Q13029 1718 aa13.56□□□□□ -0.24
TOPBP1-202ENST00000503338 WRNQ14191 1432 aaPredicted RBP eCLIP13.55□□□□□ -0.24
TOPBP1-202ENST00000503338 ABCC8Q09428 1581 aa13.5□□□□□ -0.25
TOPBP1-202ENST00000503338 PDS5BQ9NTI5 1447 aa13.5□□□□□ -0.25
TOPBP1-202ENST00000503338 FANCD2Q9BXW9 1451 aa13.48□□□□□ -0.25
TOPBP1-202ENST00000503338 NESP48681 1621 aa13.46□□□□□ -0.26
TOPBP1-202ENST00000503338 TOP2BQ02880 1626 aa13.43□□□□□ -0.26
TOPBP1-202ENST00000503338 CEP164Q9UPV0 1460 aa13.42□□□□□ -0.26
TOPBP1-202ENST00000503338 BIVM-ERCC5R4GMW8 1640 aa13.41□□□□□ -0.26
TOPBP1-202ENST00000503338 SYNJ1O43426 1573 aa13.41□□□□□ -0.26
TOPBP1-202ENST00000503338 EEA1Q15075 1411 aa13.39□□□□□ -0.27
TOPBP1-202ENST00000503338 CUX1P39880 1505 aa13.38□□□□□ -0.27
TOPBP1-202ENST00000503338 DNMBPQ6XZF7 1577 aa13.35□□□□□ -0.27
TOPBP1-202ENST00000503338 TOPBP1Q92547 1522 aa13.32□□□□□ -0.28
TOPBP1-202ENST00000503338 MRC2Q9UBG0 1479 aa13.29□□□□□ -0.28
TOPBP1-202ENST00000503338 KIF21AQ7Z4S6 1674 aa13.29□□□□□ -0.28
TOPBP1-202ENST00000503338 ERCC6Q03468 1493 aa13.29□□□□□ -0.28
TOPBP1-202ENST00000503338 FGD5Q6ZNL6 1462 aa13.28□□□□□ -0.28
TOPBP1-202ENST00000503338 URB2Q14146 1524 aaKnown RBP13.28□□□□□ -0.28
TOPBP1-202ENST00000503338 SOGA1O94964 1423 aa13.26□□□□□ -0.29
TOPBP1-202ENST00000503338 KIF27Q86VH2 1401 aa13.25□□□□□ -0.29
TOPBP1-202ENST00000503338 FAM9AQ8IZU1 332 aaPredicted RBP13.25□□□□□ -0.29
TOPBP1-202ENST00000503338 CSRNP3Q8WYN3 585 aa13.24□□□□□ -0.29
TOPBP1-202ENST00000503338 POLA1P09884 1462 aaPredicted RBP13.23□□□□□ -0.29
TOPBP1-202ENST00000503338 WDR62O43379 1518 aa13.22□□□□□ -0.29
TOPBP1-202ENST00000503338 ABCA10Q8WWZ4 1543 aa13.21□□□□□ -0.29
TOPBP1-202ENST00000503338 CUX2O14529 1486 aa13.18□□□□□ -0.3
TOPBP1-202ENST00000503338 RUSC2Q8N2Y8 1516 aa13.18□□□□□ -0.3
TOPBP1-202ENST00000503338 THOC2Q8NI27 1593 aaKnown RBP13.15□□□□□ -0.3
TOPBP1-202ENST00000503338 LOC105371045A0A1W2PR82 267 aa13.14□□□□□ -0.31
TOPBP1-202ENST00000503338 IFT140Q96RY7 1462 aa13.14□□□□□ -0.31
TOPBP1-202ENST00000503338 RAD54L2Q9Y4B4 1467 aa13.14□□□□□ -0.31
TOPBP1-202ENST00000503338 GOLGA3Q08378 1498 aa13.12□□□□□ -0.31
TOPBP1-202ENST00000503338 KIF21BO75037 1637 aa13.12□□□□□ -0.31
TOPBP1-202ENST00000503338 WDR97A6NE52 1622 aa13.11□□□□□ -0.31
TOPBP1-202ENST00000503338 PRXQ9BXM0 1461 aa13.1□□□□□ -0.31
TOPBP1-202ENST00000503338 TARBP1Q13395 1621 aaKnown RBP13.1□□□□□ -0.31
TOPBP1-202ENST00000503338 IGF1RP08069 1367 aa13.09□□□□□ -0.31
TOPBP1-202ENST00000503338 ERICH3Q5RHP9 1530 aa13.08□□□□□ -0.31
TOPBP1-202ENST00000503338 TNIKQ9UKE5 1360 aa13.07□□□□□ -0.32
TOPBP1-202ENST00000503338 GAPVD1Q14C86 1478 aa13.07□□□□□ -0.32
TOPBP1-202ENST00000503338 ABCA5Q8WWZ7 1642 aa13.06□□□□□ -0.32
TOPBP1-202ENST00000503338 CARMIL1Q5VZK9 1371 aa13.05□□□□□ -0.32
TOPBP1-202ENST00000503338 TDRD9Q8NDG6 1382 aaKnown RBP13.05□□□□□ -0.32
TOPBP1-202ENST00000503338 UBTFP17480 764 aaKnown RBP13.04□□□□□ -0.32
TOPBP1-202ENST00000503338 CUL7Q14999 1698 aa13.03□□□□□ -0.32
TOPBP1-202ENST00000503338 RAPGEF2Q9Y4G8 1499 aa13.03□□□□□ -0.32
TOPBP1-202ENST00000503338 GRIN2BQ13224 1484 aa13.01□□□□□ -0.33
TOPBP1-202ENST00000503338 EHMT2Q96KQ7 1210 aa12.99□□□□□ -0.33
TOPBP1-202ENST00000503338 AQRO60306 1485 aaKnown RBP eCLIP12.97□□□□□ -0.33
TOPBP1-202ENST00000503338 FHAD1B1AJZ9 1412 aa12.96□□□□□ -0.33
TOPBP1-202ENST00000503338 ZNF608Q9ULD9 1512 aaPredicted RBP12.96□□□□□ -0.33
TOPBP1-202ENST00000503338 PBRM1Q86U86 1689 aa12.94□□□□□ -0.34
TOPBP1-202ENST00000503338 CEP162Q5TB80 1403 aa12.94□□□□□ -0.34
TOPBP1-202ENST00000503338 EIF4G3O43432 1585 aaKnown RBP12.94□□□□□ -0.34
TOPBP1-202ENST00000503338 MAGI1Q96QZ7 1491 aaPredicted RBP12.93□□□□□ -0.34
TOPBP1-202ENST00000503338 ADAMTS12P58397 1594 aa12.9□□□□□ -0.34
TOPBP1-202ENST00000503338 CLIP1P30622 1438 aa12.88□□□□□ -0.35
TOPBP1-202ENST00000503338 SNAPC4Q5SXM2 1469 aa12.88□□□□□ -0.35
TOPBP1-202ENST00000503338 PHF23Q9BUL5 403 aaPredicted RBP12.86□□□□□ -0.35
TOPBP1-202ENST00000503338 SYNJ2O15056 1496 aa12.85□□□□□ -0.35
TOPBP1-202ENST00000503338 CHMP7Q8WUX9 453 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms