RNA–Protein interactions for RNA: ENST00000492977.5

PTPN7-216, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 1,595 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-216ENST00000492977 ARHGAP35Q9NRY4 1499 aa21.74■■□□□ 1.07
PTPN7-216ENST00000492977 HRCP23327 699 aa21.72■■□□□ 1.07
PTPN7-216ENST00000492977 APLP2Q06481 763 aa21.71■■□□□ 1.07
PTPN7-216ENST00000492977 THOC2Q8NI27 1593 aaKnown RBP21.7■■□□□ 1.07
PTPN7-216ENST00000492977 PBRM1Q86U86 1689 aa21.68■■□□□ 1.06
PTPN7-216ENST00000492977 CTTNBP2Q8WZ74 1663 aa21.66■■□□□ 1.06
PTPN7-216ENST00000492977 AQRO60306 1485 aaKnown RBP eCLIP21.66■■□□□ 1.064e-7■■■■■ 32.5
PTPN7-216ENST00000492977 GRIN2BQ13224 1484 aa21.64■■□□□ 1.06
PTPN7-216ENST00000492977 FHAD1B1AJZ9 1412 aa21.63■■□□□ 1.05
PTPN7-216ENST00000492977 EFCAB5A4FU69 1503 aa21.6■■□□□ 1.05
PTPN7-216ENST00000492977 ZNF608Q9ULD9 1512 aaPredicted RBP21.59■■□□□ 1.05
PTPN7-216ENST00000492977 TTBK1Q5TCY1 1321 aaPredicted RBP21.59■■□□□ 1.05
PTPN7-216ENST00000492977 ADAMTS12P58397 1594 aa21.57■■□□□ 1.04
PTPN7-216ENST00000492977 EIF4G3O43432 1585 aaKnown RBP21.51■■□□□ 1.03
PTPN7-216ENST00000492977 MAP3K1Q13233 1512 aa21.49■■□□□ 1.03
PTPN7-216ENST00000492977 SAMD9Q5K651 1589 aa21.46■■□□□ 1.03
PTPN7-216ENST00000492977 SNAPC4Q5SXM2 1469 aa21.45■■□□□ 1.02
PTPN7-216ENST00000492977 FHOD3Q2V2M9 1422 aa21.45■■□□□ 1.02
PTPN7-216ENST00000492977 P3H3Q8IVL6 736 aa21.44■■□□□ 1.02
PTPN7-216ENST00000492977 MAGI1Q96QZ7 1491 aaPredicted RBP21.44■■□□□ 1.02
PTPN7-216ENST00000492977 KANK4Q5T7N3 995 aaPredicted RBP21.43■■□□□ 1.02
PTPN7-216ENST00000492977 FMN1Q68DA7 1419 aa21.42■■□□□ 1.02
PTPN7-216ENST00000492977 ZEB1P37275 1124 aaPredicted RBP21.4■■□□□ 1.02
PTPN7-216ENST00000492977 IQGAP2Q13576 1575 aa21.4■■□□□ 1.02
PTPN7-216ENST00000492977 TIAM1Q13009 1591 aa21.4■■□□□ 1.02
PTPN7-216ENST00000492977 FYCO1Q9BQS8 1478 aa21.39■■□□□ 1.01
PTPN7-216ENST00000492977 CASKIN1Q8WXD9 1431 aa21.39■■□□□ 1.01
PTPN7-216ENST00000492977 PCF11O94913 1555 aaKnown RBP21.38■■□□□ 1.01
PTPN7-216ENST00000492977 GRIN2AQ12879 1464 aa21.37■■□□□ 1.01
PTPN7-216ENST00000492977 SYNJ2O15056 1496 aa21.35■■□□□ 1.01
PTPN7-216ENST00000492977 KIAA0586Q9BVV6 1533 aa21.35■■□□□ 1.01
PTPN7-216ENST00000492977 CFAP43Q8NDM7 1665 aa21.33■■□□□ 1.01
PTPN7-216ENST00000492977 PIAS4Q8N2W9 510 aaPredicted RBP21.33■■□□□ 1.01
PTPN7-216ENST00000492977 UGGT2Q9NYU1 1516 aa21.32■■□□□ 1
PTPN7-216ENST00000492977 LRRC9Q6ZRR7 1453 aa21.31■■□□□ 1
PTPN7-216ENST00000492977 CHMP7Q8WUX9 453 aaPredicted RBP21.31■■□□□ 1
PTPN7-216ENST00000492977 RRBP1Q9P2E9 1410 aaKnown RBP21.27■■□□□ 1
PTPN7-216ENST00000492977 ATP1B4Q9UN42 357 aaPredicted RBP21.26■□□□□ 0.99
PTPN7-216ENST00000492977 HNRNPUL2Q1KMD3 747 aaKnown RBP21.22■□□□□ 0.99
PTPN7-216ENST00000492977 NUP160Q12769 1436 aa21.22■□□□□ 0.99
PTPN7-216ENST00000492977 CEP170Q5SW79 1584 aa21.21■□□□□ 0.99
PTPN7-216ENST00000492977 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.21■□□□□ 0.99
PTPN7-216ENST00000492977 FBLN2P98095 1184 aa21.19■□□□□ 0.98
PTPN7-216ENST00000492977 CCER1Q8TC90 406 aaPredicted RBP21.19■□□□□ 0.98
PTPN7-216ENST00000492977 CCNB3Q8WWL7 1395 aa21.19■□□□□ 0.98
PTPN7-216ENST00000492977 DISP1Q96F81 1524 aa21.18■□□□□ 0.98
PTPN7-216ENST00000492977 KIAA0556O60303 1618 aa21.18■□□□□ 0.98
PTPN7-216ENST00000492977 PPP4R3CPQ6ZMV5 832 aa21.17■□□□□ 0.98
PTPN7-216ENST00000492977 HECW1Q76N89 1606 aa21.14■□□□□ 0.98
PTPN7-216ENST00000492977 CCDC18Q5T9S5 1454 aa21.14■□□□□ 0.97
PTPN7-216ENST00000492977 LRRIQ1Q96JM4 1722 aa21.14■□□□□ 0.97
PTPN7-216ENST00000492977 PHLDB1Q86UU1 1377 aa21.12■□□□□ 0.97
PTPN7-216ENST00000492977 MTUS2Q5JR59 1369 aa21.11■□□□□ 0.97
PTPN7-216ENST00000492977 JPH4Q96JJ6 628 aa21.09■□□□□ 0.97
PTPN7-216ENST00000492977 CARMIL2Q6F5E8 1435 aa21.08■□□□□ 0.96
PTPN7-216ENST00000492977 EHBP1L1Q8N3D4 1523 aa21.06■□□□□ 0.96
PTPN7-216ENST00000492977 EPRSP07814 1512 aaKnown RBP21.06■□□□□ 0.96
PTPN7-216ENST00000492977 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.03■□□□□ 0.96
PTPN7-216ENST00000492977 SUPT6HQ7KZ85 1726 aaKnown RBP21.02■□□□□ 0.96
PTPN7-216ENST00000492977 CHD1O14646 1710 aa21.01■□□□□ 0.95
PTPN7-216ENST00000492977 RAPGEF6Q8TEU7 1601 aa21.01■□□□□ 0.95
PTPN7-216ENST00000492977 NCOA2Q15596 1464 aa20.99■□□□□ 0.95
PTPN7-216ENST00000492977 MAGI3Q5TCQ9 1506 aa20.97■□□□□ 0.95
PTPN7-216ENST00000492977 FGD6Q6ZV73 1430 aa20.96■□□□□ 0.95
PTPN7-216ENST00000492977 ARHGEF11O15085 1522 aa20.96■□□□□ 0.95
PTPN7-216ENST00000492977 CDK13Q14004 1512 aaKnown RBP20.96■□□□□ 0.95
PTPN7-216ENST00000492977 NUP153P49790 1475 aaKnown RBP20.96■□□□□ 0.95
PTPN7-216ENST00000492977 FAM50AQ14320 339 aaKnown RBP20.95■□□□□ 0.94
PTPN7-216ENST00000492977 MYOM3Q5VTT5 1437 aa20.94■□□□□ 0.94
PTPN7-216ENST00000492977 ITGAEP38570 1179 aa20.92■□□□□ 0.94
PTPN7-216ENST00000492977 CDK11AQ9UQ88 783 aaPredicted RBP20.91■□□□□ 0.94
PTPN7-216ENST00000492977 PRG4Q92954 1404 aaPredicted RBP20.9■□□□□ 0.94
PTPN7-216ENST00000492977 PLB1Q6P1J6 1458 aa20.89■□□□□ 0.94
PTPN7-216ENST00000492977 SHROOM2Q13796 1616 aa20.88■□□□□ 0.93
PTPN7-216ENST00000492977 CLSPNQ9HAW4 1339 aa20.88■□□□□ 0.93
PTPN7-216ENST00000492977 ABCA8O94911 1581 aa20.86■□□□□ 0.93
PTPN7-216ENST00000492977 SLC4A1APQ9BWU0 796 aaKnown RBP20.85■□□□□ 0.93
PTPN7-216ENST00000492977 SETD5Q9C0A6 1442 aa20.85■□□□□ 0.93
PTPN7-216ENST00000492977 ARID3CA6NKF2 412 aa20.85■□□□□ 0.93
PTPN7-216ENST00000492977 DHX57Q6P158 1386 aaKnown RBP20.84■□□□□ 0.93
PTPN7-216ENST00000492977 PTPN23Q9H3S7 1636 aa20.83■□□□□ 0.92
PTPN7-216ENST00000492977 PTPRGP23470 1445 aa20.82■□□□□ 0.92
PTPN7-216ENST00000492977 MIA2Q96PC5 1412 aa20.82■□□□□ 0.92
PTPN7-216ENST00000492977 NCBP3Q53F19 620 aaKnown RBP20.82■□□□□ 0.92
PTPN7-216ENST00000492977 TCOF1Q13428 1488 aaKnown RBP20.82■□□□□ 0.92
PTPN7-216ENST00000492977 RAB3GAP2Q9H2M9 1393 aa20.81■□□□□ 0.92
PTPN7-216ENST00000492977 TROQ12816 1431 aaPredicted RBP20.8■□□□□ 0.92
PTPN7-216ENST00000492977 CLASP1Q7Z460 1538 aa20.79■□□□□ 0.92
PTPN7-216ENST00000492977 ATP10BO94823 1461 aa20.75■□□□□ 0.91
PTPN7-216ENST00000492977 ADCY10Q96PN6 1610 aa20.74■□□□□ 0.91
PTPN7-216ENST00000492977 PLEKHD1A6NEE1 506 aa20.72■□□□□ 0.91
PTPN7-216ENST00000492977 PTPRKQ15262 1439 aa20.72■□□□□ 0.91
PTPN7-216ENST00000492977 UACAQ9BZF9 1416 aa20.71■□□□□ 0.91
PTPN7-216ENST00000492977 HFM1A2PYH4 1435 aa20.7■□□□□ 0.9
PTPN7-216ENST00000492977 ERCC6L2Q5T890 1561 aa20.67■□□□□ 0.9
PTPN7-216ENST00000492977 ITSN2Q9NZM3 1697 aa20.66■□□□□ 0.9
PTPN7-216ENST00000492977 KIF14Q15058 1648 aa20.64■□□□□ 0.9
PTPN7-216ENST00000492977 AKNAQ7Z591 1439 aa20.64■□□□□ 0.89
PTPN7-216ENST00000492977 GPATCH8Q9UKJ3 1502 aaKnown RBP20.63■□□□□ 0.89
PTPN7-216ENST00000492977 NAIPQ13075 1403 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms