RNA–Protein interactions for RNA: ENST00000492977.5

PTPN7-216, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 1,595 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-216ENST00000492977 NISCHQ9Y2I1 1504 aa31.26■■■□□ 2.59
PTPN7-216ENST00000492977 CHIC1Q5VXU3 224 aa28.9■■■□□ 2.22
PTPN7-216ENST00000492977 AEBP2Q6ZN18 517 aaPredicted RBP28.74■■■□□ 2.19
PTPN7-216ENST00000492977 CCDC180Q9P1Z9 1646 aa27.14■■□□□ 1.94
PTPN7-216ENST00000492977 ZCCHC6Q5VYS8 1495 aaKnown RBP26.29■■□□□ 1.8
PTPN7-216ENST00000492977 DCAF1Q9Y4B6 1507 aa25.87■■□□□ 1.73
PTPN7-216ENST00000492977 DCAF8L2P0C7V8 631 aa25.73■■□□□ 1.71
PTPN7-216ENST00000492977 SHROOM4Q9ULL8 1493 aa25.61■■□□□ 1.69
PTPN7-216ENST00000492977 PHF23Q9BUL5 403 aaPredicted RBP25.56■■□□□ 1.68
PTPN7-216ENST00000492977 MYO15BQ96JP2 1530 aa25.49■■□□□ 1.67
PTPN7-216ENST00000492977 ABCC9O60706 1549 aa25.43■■□□□ 1.66
PTPN7-216ENST00000492977 NACADO15069 1562 aa25.25■■□□□ 1.63
PTPN7-216ENST00000492977 SCRIBQ14160 1630 aa24.96■■□□□ 1.59
PTPN7-216ENST00000492977 RB1CC1Q8TDY2 1594 aa24.96■■□□□ 1.59
PTPN7-216ENST00000492977 SUPT5HO00267 1087 aaKnown RBP24.8■■□□□ 1.56
PTPN7-216ENST00000492977 UNC13AQ9UPW8 1703 aa24.44■■□□□ 1.5
PTPN7-216ENST00000492977 RSF1Q96T23 1441 aaPredicted RBP24.34■■□□□ 1.49
PTPN7-216ENST00000492977 CECR2Q9BXF3 1484 aa24.25■■□□□ 1.47
PTPN7-216ENST00000492977 BICRAQ9NZM4 1560 aa24.19■■□□□ 1.46
PTPN7-216ENST00000492977 SENP3Q9H4L4 574 aaPredicted RBP24.16■■□□□ 1.46
PTPN7-216ENST00000492977 MROH2BQ7Z745 1585 aa24.14■■□□□ 1.45
PTPN7-216ENST00000492977 BAZ1AQ9NRL2 1556 aaPredicted RBP24.12■■□□□ 1.45
PTPN7-216ENST00000492977 PABPN1Q86U42 306 aaKnown RBP eCLIP24.04■■□□□ 1.44
PTPN7-216ENST00000492977 SMARCA4P51532 1647 aa23.96■■□□□ 1.43
PTPN7-216ENST00000492977 WIZO95785 1651 aa23.95■■□□□ 1.42
PTPN7-216ENST00000492977 PLPPR3Q6T4P5 718 aa23.86■■□□□ 1.41
PTPN7-216ENST00000492977 TOP2AP11388 1531 aaKnown RBP23.72■■□□□ 1.39
PTPN7-216ENST00000492977 PEG3Q9GZU2 1588 aa23.68■■□□□ 1.38
PTPN7-216ENST00000492977 SMARCA2P51531 1590 aa23.53■■□□□ 1.36
PTPN7-216ENST00000492977 ATAD2BQ9ULI0 1458 aa23.53■■□□□ 1.36
PTPN7-216ENST00000492977 CCDC88BA6NC98 1476 aa23.49■■□□□ 1.35
PTPN7-216ENST00000492977 EIF4G1Q04637 1599 aaKnown RBP23.44■■□□□ 1.34
PTPN7-216ENST00000492977 BAZ1BQ9UIG0 1483 aaKnown RBP23.4■■□□□ 1.34
PTPN7-216ENST00000492977 TRIM41Q8WV44 630 aa23.32■■□□□ 1.32
PTPN7-216ENST00000492977 NCAPD3P42695 1498 aa23.3■■□□□ 1.32
PTPN7-216ENST00000492977 HMGXB3Q12766 1538 aa23.28■■□□□ 1.32
PTPN7-216ENST00000492977 CC2D2AQ9P2K1 1620 aa23.04■■□□□ 1.28
PTPN7-216ENST00000492977 ABCC8Q09428 1581 aa23.03■■□□□ 1.28
PTPN7-216ENST00000492977 LOC105371045A0A1W2PR82 267 aa22.96■■□□□ 1.27
PTPN7-216ENST00000492977 WRNQ14191 1432 aaPredicted RBP eCLIP22.9■■□□□ 1.26
PTPN7-216ENST00000492977 FAM9AQ8IZU1 332 aaPredicted RBP22.86■■□□□ 1.25
PTPN7-216ENST00000492977 CFTRP13569 1480 aa22.84■■□□□ 1.25
PTPN7-216ENST00000492977 SYNJ1O43426 1573 aa22.77■■□□□ 1.24
PTPN7-216ENST00000492977 EEA1Q15075 1411 aa22.73■■□□□ 1.23
PTPN7-216ENST00000492977 PRDM2Q13029 1718 aa22.73■■□□□ 1.23
PTPN7-216ENST00000492977 CADPSQ9ULU8 1353 aa22.72■■□□□ 1.23
PTPN7-216ENST00000492977 TOP2BQ02880 1626 aa22.69■■□□□ 1.22
PTPN7-216ENST00000492977 SOGA1O94964 1423 aa22.67■■□□□ 1.22
PTPN7-216ENST00000492977 BIVM-ERCC5R4GMW8 1640 aa22.65■■□□□ 1.22
PTPN7-216ENST00000492977 CSRNP3Q8WYN3 585 aa22.58■■□□□ 1.2
PTPN7-216ENST00000492977 CUX1P39880 1505 aa22.56■■□□□ 1.2
PTPN7-216ENST00000492977 RUSC2Q8N2Y8 1516 aa22.56■■□□□ 1.2
PTPN7-216ENST00000492977 EHMT2Q96KQ7 1210 aa22.5■■□□□ 1.19
PTPN7-216ENST00000492977 LAMC3Q9Y6N6 1575 aa22.46■■□□□ 1.19
PTPN7-216ENST00000492977 FANCD2Q9BXW9 1451 aa22.46■■□□□ 1.19
PTPN7-216ENST00000492977 NESP48681 1621 aa22.4■■□□□ 1.18
PTPN7-216ENST00000492977 ADRA2BP18089 450 aa22.4■■□□□ 1.18
PTPN7-216ENST00000492977 GOLGA3Q08378 1498 aa22.39■■□□□ 1.18
PTPN7-216ENST00000492977 TNIKQ9UKE5 1360 aa22.39■■□□□ 1.18
PTPN7-216ENST00000492977 KIF21BO75037 1637 aa22.39■■□□□ 1.17
PTPN7-216ENST00000492977 CEP164Q9UPV0 1460 aa22.38■■□□□ 1.17
PTPN7-216ENST00000492977 FOXD1Q16676 465 aa22.37■■□□□ 1.17
PTPN7-216ENST00000492977 DNAJC5BQ9UF47 199 aa22.36■■□□□ 1.17
PTPN7-216ENST00000492977 KIF27Q86VH2 1401 aa22.32■■□□□ 1.16
PTPN7-216ENST00000492977 PDS5BQ9NTI5 1447 aa22.3■■□□□ 1.16
PTPN7-216ENST00000492977 UBTFP17480 764 aaKnown RBP22.29■■□□□ 1.16
PTPN7-216ENST00000492977 DNMBPQ6XZF7 1577 aa22.29■■□□□ 1.16
PTPN7-216ENST00000492977 FGD5Q6ZNL6 1462 aa22.27■■□□□ 1.16
PTPN7-216ENST00000492977 CEP162Q5TB80 1403 aa22.26■■□□□ 1.15
PTPN7-216ENST00000492977 PPP6R1Q9UPN7 881 aa22.25■■□□□ 1.15
PTPN7-216ENST00000492977 TOPBP1Q92547 1522 aa22.23■■□□□ 1.15
PTPN7-216ENST00000492977 PRXQ9BXM0 1461 aa22.22■■□□□ 1.15
PTPN7-216ENST00000492977 ERICH3Q5RHP9 1530 aa22.21■■□□□ 1.15
PTPN7-216ENST00000492977 RAPGEF2Q9Y4G8 1499 aa22.2■■□□□ 1.14
PTPN7-216ENST00000492977 CUX2O14529 1486 aa22.18■■□□□ 1.14
PTPN7-216ENST00000492977 PCGF6Q9BYE7 350 aa22.15■■□□□ 1.14
PTPN7-216ENST00000492977 URB2Q14146 1524 aaKnown RBP22.15■■□□□ 1.14
PTPN7-216ENST00000492977 POLA1P09884 1462 aaPredicted RBP22.14■■□□□ 1.13
PTPN7-216ENST00000492977 TRIM26Q12899 539 aaPredicted RBP22.13■■□□□ 1.13
PTPN7-216ENST00000492977 KIF21AQ7Z4S6 1674 aa22.13■■□□□ 1.13
PTPN7-216ENST00000492977 ABCA10Q8WWZ4 1543 aa22.1■■□□□ 1.13
PTPN7-216ENST00000492977 IGF1RP08069 1367 aa22.1■■□□□ 1.13
PTPN7-216ENST00000492977 RAD54L2Q9Y4B4 1467 aa22.06■■□□□ 1.12
PTPN7-216ENST00000492977 CLIP1P30622 1438 aa22.04■■□□□ 1.12
PTPN7-216ENST00000492977 CARMIL1Q5VZK9 1371 aa21.99■■□□□ 1.11
PTPN7-216ENST00000492977 WDR97A6NE52 1622 aa21.98■■□□□ 1.11
PTPN7-216ENST00000492977 MRC2Q9UBG0 1479 aa21.97■■□□□ 1.11
PTPN7-216ENST00000492977 CUL7Q14999 1698 aa21.89■■□□□ 1.1
PTPN7-216ENST00000492977 VPS8Q8N3P4 1428 aa21.89■■□□□ 1.09
PTPN7-216ENST00000492977 ABCA5Q8WWZ7 1642 aa21.88■■□□□ 1.09
PTPN7-216ENST00000492977 TARBP1Q13395 1621 aaKnown RBP21.88■■□□□ 1.09
PTPN7-216ENST00000492977 GAPVD1Q14C86 1478 aa21.85■■□□□ 1.09
PTPN7-216ENST00000492977 WDR62O43379 1518 aa21.84■■□□□ 1.09
PTPN7-216ENST00000492977 TDRD9Q8NDG6 1382 aaKnown RBP21.84■■□□□ 1.09
PTPN7-216ENST00000492977 PPARGC1BQ86YN6 1023 aaKnown RBP21.82■■□□□ 1.08
PTPN7-216ENST00000492977 RANGAP1P46060 587 aaPredicted RBP21.82■■□□□ 1.08
PTPN7-216ENST00000492977 ERCC6Q03468 1493 aa21.8■■□□□ 1.08
PTPN7-216ENST00000492977 ARAP1Q96P48 1450 aa21.78■■□□□ 1.08
PTPN7-216ENST00000492977 IFT140Q96RY7 1462 aa21.76■■□□□ 1.07
PTPN7-216ENST00000492977 KCNA4P22459 653 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms