RNA–Protein interactions for RNA: ENST00000480057.1

VTI1A-204, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-204ENST00000480057 ARAP1Q96P48 1450 aa17.25■□□□□ 0.35
VTI1A-204ENST00000480057 ARHGAP35Q9NRY4 1499 aa17.24■□□□□ 0.35
VTI1A-204ENST00000480057 EFCAB5A4FU69 1503 aa17.23■□□□□ 0.35
VTI1A-204ENST00000480057 MAGI1Q96QZ7 1491 aaPredicted RBP17.21■□□□□ 0.35
VTI1A-204ENST00000480057 SNAPC4Q5SXM2 1469 aa17.17■□□□□ 0.34
VTI1A-204ENST00000480057 PCGF6Q9BYE7 350 aa17.15■□□□□ 0.34
VTI1A-204ENST00000480057 SAMD9Q5K651 1589 aa17.12■□□□□ 0.33
VTI1A-204ENST00000480057 SYNJ2O15056 1496 aa17.12■□□□□ 0.33
VTI1A-204ENST00000480057 GRIN2AQ12879 1464 aa17.11■□□□□ 0.33
VTI1A-204ENST00000480057 RANGAP1P46060 587 aaPredicted RBP17.1■□□□□ 0.33
VTI1A-204ENST00000480057 MAP3K1Q13233 1512 aa17.1■□□□□ 0.33
VTI1A-204ENST00000480057 APLP2Q06481 763 aa17.09■□□□□ 0.33
VTI1A-204ENST00000480057 IQGAP2Q13576 1575 aa17.09■□□□□ 0.33
VTI1A-204ENST00000480057 KIAA0586Q9BVV6 1533 aa17.06■□□□□ 0.32
VTI1A-204ENST00000480057 UGGT2Q9NYU1 1516 aa17.05■□□□□ 0.32
VTI1A-204ENST00000480057 FMN1Q68DA7 1419 aa17.04■□□□□ 0.32
VTI1A-204ENST00000480057 FYCO1Q9BQS8 1478 aa17.02■□□□□ 0.32
VTI1A-204ENST00000480057 NUP160Q12769 1436 aa17.01■□□□□ 0.31
VTI1A-204ENST00000480057 CASKIN1Q8WXD9 1431 aa17.01■□□□□ 0.31
VTI1A-204ENST00000480057 FHOD3Q2V2M9 1422 aa17■□□□□ 0.31
VTI1A-204ENST00000480057 CHMP7Q8WUX9 453 aaPredicted RBP16.99■□□□□ 0.31
VTI1A-204ENST00000480057 PCF11O94913 1555 aaKnown RBP16.98■□□□□ 0.31
VTI1A-204ENST00000480057 TIAM1Q13009 1591 aa16.98■□□□□ 0.31
VTI1A-204ENST00000480057 CEP170Q5SW79 1584 aa16.98■□□□□ 0.31
VTI1A-204ENST00000480057 PPARGC1BQ86YN6 1023 aaKnown RBP16.97■□□□□ 0.31
VTI1A-204ENST00000480057 CFAP43Q8NDM7 1665 aa16.97■□□□□ 0.31
VTI1A-204ENST00000480057 KIAA0556O60303 1618 aa16.92■□□□□ 0.3
VTI1A-204ENST00000480057 P3H3Q8IVL6 736 aa16.91■□□□□ 0.3
VTI1A-204ENST00000480057 DISP1Q96F81 1524 aa16.9■□□□□ 0.3
VTI1A-204ENST00000480057 LRRC9Q6ZRR7 1453 aa16.88■□□□□ 0.29
VTI1A-204ENST00000480057 CHD1O14646 1710 aa16.87■□□□□ 0.29
VTI1A-204ENST00000480057 HECW1Q76N89 1606 aa16.86■□□□□ 0.29
VTI1A-204ENST00000480057 CCDC18Q5T9S5 1454 aa16.86■□□□□ 0.29
VTI1A-204ENST00000480057 FBLN2P98095 1184 aa16.85■□□□□ 0.29
VTI1A-204ENST00000480057 KANK4Q5T7N3 995 aaPredicted RBP16.85■□□□□ 0.29
VTI1A-204ENST00000480057 CARMIL2Q6F5E8 1435 aa16.85■□□□□ 0.29
VTI1A-204ENST00000480057 RRBP1Q9P2E9 1410 aaKnown RBP16.82■□□□□ 0.28
VTI1A-204ENST00000480057 TTBK1Q5TCY1 1321 aaPredicted RBP16.81■□□□□ 0.28
VTI1A-204ENST00000480057 HRCP23327 699 aa16.8■□□□□ 0.28
VTI1A-204ENST00000480057 JPH4Q96JJ6 628 aa16.8■□□□□ 0.28
VTI1A-204ENST00000480057 LRRIQ1Q96JM4 1722 aa16.79■□□□□ 0.28
VTI1A-204ENST00000480057 SHROOM2Q13796 1616 aa16.78■□□□□ 0.28
VTI1A-204ENST00000480057 EHBP1L1Q8N3D4 1523 aa16.77■□□□□ 0.28
VTI1A-204ENST00000480057 RAPGEF6Q8TEU7 1601 aa16.77■□□□□ 0.27
VTI1A-204ENST00000480057 EPRSP07814 1512 aaKnown RBP16.75■□□□□ 0.27
VTI1A-204ENST00000480057 ATP1B4Q9UN42 357 aaPredicted RBP16.74■□□□□ 0.27
VTI1A-204ENST00000480057 CLASP1Q7Z460 1538 aa16.73■□□□□ 0.27
VTI1A-204ENST00000480057 CCNB3Q8WWL7 1395 aa16.73■□□□□ 0.27
VTI1A-204ENST00000480057 MTUS2Q5JR59 1369 aa16.72■□□□□ 0.27
VTI1A-204ENST00000480057 SUPT6HQ7KZ85 1726 aaKnown RBP16.71■□□□□ 0.27
VTI1A-204ENST00000480057 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.7■□□□□ 0.26
VTI1A-204ENST00000480057 PRG4Q92954 1404 aaPredicted RBP16.7■□□□□ 0.26
VTI1A-204ENST00000480057 NUP153P49790 1475 aaKnown RBP16.69■□□□□ 0.26
VTI1A-204ENST00000480057 ZEB1P37275 1124 aaPredicted RBP16.69■□□□□ 0.26
VTI1A-204ENST00000480057 ABCA8O94911 1581 aa16.68■□□□□ 0.26
VTI1A-204ENST00000480057 ARHGEF11O15085 1522 aa16.68■□□□□ 0.26
VTI1A-204ENST00000480057 PHLDB1Q86UU1 1377 aa16.67■□□□□ 0.26
VTI1A-204ENST00000480057 NCOA2Q15596 1464 aa16.65■□□□□ 0.26
VTI1A-204ENST00000480057 MAGI3Q5TCQ9 1506 aa16.65■□□□□ 0.26
VTI1A-204ENST00000480057 CDK13Q14004 1512 aaKnown RBP16.64■□□□□ 0.25
VTI1A-204ENST00000480057 PLB1Q6P1J6 1458 aa16.63■□□□□ 0.25
VTI1A-204ENST00000480057 PTPRGP23470 1445 aa16.62■□□□□ 0.25
VTI1A-204ENST00000480057 CDK11AQ9UQ88 783 aaPredicted RBP16.62■□□□□ 0.25
VTI1A-204ENST00000480057 MYOM3Q5VTT5 1437 aa16.61■□□□□ 0.25
VTI1A-204ENST00000480057 FGD6Q6ZV73 1430 aa16.61■□□□□ 0.25
VTI1A-204ENST00000480057 FOXD1Q16676 465 aa16.59■□□□□ 0.25
VTI1A-204ENST00000480057 HNRNPUL2Q1KMD3 747 aaKnown RBP16.58■□□□□ 0.24
VTI1A-204ENST00000480057 ADCY10Q96PN6 1610 aa16.58■□□□□ 0.24
VTI1A-204ENST00000480057 TROQ12816 1431 aaPredicted RBP16.57■□□□□ 0.24
VTI1A-204ENST00000480057 MIA2Q96PC5 1412 aa16.57■□□□□ 0.24
VTI1A-204ENST00000480057 TCOF1Q13428 1488 aaKnown RBP16.55■□□□□ 0.24
VTI1A-204ENST00000480057 UACAQ9BZF9 1416 aa16.55■□□□□ 0.24
VTI1A-204ENST00000480057 ATP10BO94823 1461 aa16.54■□□□□ 0.24
VTI1A-204ENST00000480057 UHRF1BP1LA0JNW5 1464 aa16.53■□□□□ 0.24
VTI1A-204ENST00000480057 ERCC6L2Q5T890 1561 aa16.52■□□□□ 0.24
VTI1A-204ENST00000480057 ABCC2Q92887 1545 aa16.52■□□□□ 0.24
VTI1A-204ENST00000480057 PTPN23Q9H3S7 1636 aa16.52■□□□□ 0.23
VTI1A-204ENST00000480057 CCER1Q8TC90 406 aaPredicted RBP16.51■□□□□ 0.23
VTI1A-204ENST00000480057 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.49■□□□□ 0.23
VTI1A-204ENST00000480057 ITSN2Q9NZM3 1697 aa16.49■□□□□ 0.23
VTI1A-204ENST00000480057 FAM50AQ14320 339 aaKnown RBP16.48■□□□□ 0.23
VTI1A-204ENST00000480057 OSCARQ8IYS5 282 aa16.47■□□□□ 0.23
VTI1A-204ENST00000480057 KIF14Q15058 1648 aa16.47■□□□□ 0.23
VTI1A-204ENST00000480057 PLEKHD1A6NEE1 506 aa16.46■□□□□ 0.23
VTI1A-204ENST00000480057 CLSPNQ9HAW4 1339 aa16.45■□□□□ 0.22
VTI1A-204ENST00000480057 ARID3CA6NKF2 412 aa16.44■□□□□ 0.22
VTI1A-204ENST00000480057 SETD5Q9C0A6 1442 aa16.44■□□□□ 0.22
VTI1A-204ENST00000480057 ABCC10Q5T3U5 1492 aa16.42■□□□□ 0.22
VTI1A-204ENST00000480057 KDM5BQ9UGL1 1544 aa16.42■□□□□ 0.22
VTI1A-204ENST00000480057 AKNAQ7Z591 1439 aa16.42■□□□□ 0.22
VTI1A-204ENST00000480057 GPATCH8Q9UKJ3 1502 aaKnown RBP16.41■□□□□ 0.22
VTI1A-204ENST00000480057 ITGAEP38570 1179 aa16.39■□□□□ 0.21
VTI1A-204ENST00000480057 HFM1A2PYH4 1435 aa16.38■□□□□ 0.21
VTI1A-204ENST00000480057 RAB3GAP2Q9H2M9 1393 aa16.38■□□□□ 0.21
VTI1A-204ENST00000480057 DNMT1P26358 1616 aaKnown RBP16.37■□□□□ 0.21
VTI1A-204ENST00000480057 ZCCHC11Q5TAX3 1644 aaKnown RBP16.37■□□□□ 0.21
VTI1A-204ENST00000480057 DHX57Q6P158 1386 aaKnown RBP16.37■□□□□ 0.21
VTI1A-204ENST00000480057 CDC42BPAQ5VT25 1732 aa16.36■□□□□ 0.21
VTI1A-204ENST00000480057 PTPRKQ15262 1439 aa16.36■□□□□ 0.21
VTI1A-204ENST00000480057 ACIN1Q9UKV3 1341 aaKnown RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms