RNA–Protein interactions for RNA: ENST00000480057.1

VTI1A-204, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-204ENST00000480057 NISCHQ9Y2I1 1504 aa24.95■■□□□ 1.58
VTI1A-204ENST00000480057 CCDC180Q9P1Z9 1646 aa21.82■■□□□ 1.08
VTI1A-204ENST00000480057 ZCCHC6Q5VYS8 1495 aaKnown RBP20.99■□□□□ 0.95
VTI1A-204ENST00000480057 AEBP2Q6ZN18 517 aaPredicted RBP20.75■□□□□ 0.91
VTI1A-204ENST00000480057 DCAF1Q9Y4B6 1507 aa20.74■□□□□ 0.91
VTI1A-204ENST00000480057 MYO15BQ96JP2 1530 aa20.51■□□□□ 0.87
VTI1A-204ENST00000480057 ABCC9O60706 1549 aa20.37■□□□□ 0.85
VTI1A-204ENST00000480057 DCAF8L2P0C7V8 631 aa20.35■□□□□ 0.85
VTI1A-204ENST00000480057 NACADO15069 1562 aa20.29■□□□□ 0.84
VTI1A-204ENST00000480057 SHROOM4Q9ULL8 1493 aa20.15■□□□□ 0.82
VTI1A-204ENST00000480057 RB1CC1Q8TDY2 1594 aa20.08■□□□□ 0.8
VTI1A-204ENST00000480057 SCRIBQ14160 1630 aa19.91■□□□□ 0.78
VTI1A-204ENST00000480057 UNC13AQ9UPW8 1703 aa19.6■□□□□ 0.73
VTI1A-204ENST00000480057 SUPT5HO00267 1087 aaKnown RBP19.44■□□□□ 0.7
VTI1A-204ENST00000480057 BICRAQ9NZM4 1560 aa19.41■□□□□ 0.7
VTI1A-204ENST00000480057 RSF1Q96T23 1441 aaPredicted RBP19.34■□□□□ 0.69
VTI1A-204ENST00000480057 CHIC1Q5VXU3 224 aa19.29■□□□□ 0.68
VTI1A-204ENST00000480057 CECR2Q9BXF3 1484 aa19.28■□□□□ 0.68
VTI1A-204ENST00000480057 BAZ1AQ9NRL2 1556 aaPredicted RBP19.28■□□□□ 0.68
VTI1A-204ENST00000480057 MROH2BQ7Z745 1585 aa19.22■□□□□ 0.67
VTI1A-204ENST00000480057 PABPN1Q86U42 306 aaKnown RBP eCLIP19.17■□□□□ 0.66
VTI1A-204ENST00000480057 SMARCA4P51532 1647 aa19.16■□□□□ 0.66
VTI1A-204ENST00000480057 WIZO95785 1651 aa19.05■□□□□ 0.64
VTI1A-204ENST00000480057 PEG3Q9GZU2 1588 aa19■□□□□ 0.63
VTI1A-204ENST00000480057 TOP2AP11388 1531 aaKnown RBP18.95■□□□□ 0.62
VTI1A-204ENST00000480057 SMARCA2P51531 1590 aa18.87■□□□□ 0.61
VTI1A-204ENST00000480057 EIF4G1Q04637 1599 aaKnown RBP18.83■□□□□ 0.6
VTI1A-204ENST00000480057 ATAD2BQ9ULI0 1458 aa18.82■□□□□ 0.6
VTI1A-204ENST00000480057 BAZ1BQ9UIG0 1483 aaKnown RBP18.71■□□□□ 0.59
VTI1A-204ENST00000480057 HMGXB3Q12766 1538 aa18.7■□□□□ 0.58
VTI1A-204ENST00000480057 NCAPD3P42695 1498 aa18.7■□□□□ 0.58
VTI1A-204ENST00000480057 CCDC88BA6NC98 1476 aa18.68■□□□□ 0.58
VTI1A-204ENST00000480057 CC2D2AQ9P2K1 1620 aa18.52■□□□□ 0.55
VTI1A-204ENST00000480057 TRIM41Q8WV44 630 aa18.36■□□□□ 0.53
VTI1A-204ENST00000480057 CFTRP13569 1480 aa18.27■□□□□ 0.52
VTI1A-204ENST00000480057 PRDM2Q13029 1718 aa18.24■□□□□ 0.51
VTI1A-204ENST00000480057 ABCC8Q09428 1581 aa18.24■□□□□ 0.51
VTI1A-204ENST00000480057 WRNQ14191 1432 aaPredicted RBP eCLIP18.21■□□□□ 0.51
VTI1A-204ENST00000480057 CADPSQ9ULU8 1353 aa18.18■□□□□ 0.5
VTI1A-204ENST00000480057 SYNJ1O43426 1573 aa18.1■□□□□ 0.49
VTI1A-204ENST00000480057 TOP2BQ02880 1626 aa18.09■□□□□ 0.49
VTI1A-204ENST00000480057 BIVM-ERCC5R4GMW8 1640 aa18.09■□□□□ 0.49
VTI1A-204ENST00000480057 EEA1Q15075 1411 aa18.07■□□□□ 0.48
VTI1A-204ENST00000480057 LAMC3Q9Y6N6 1575 aa18.07■□□□□ 0.48
VTI1A-204ENST00000480057 CUX1P39880 1505 aa17.98■□□□□ 0.47
VTI1A-204ENST00000480057 FANCD2Q9BXW9 1451 aa17.96■□□□□ 0.47
VTI1A-204ENST00000480057 SOGA1O94964 1423 aa17.91■□□□□ 0.46
VTI1A-204ENST00000480057 LOC105371045A0A1W2PR82 267 aa17.91■□□□□ 0.46
VTI1A-204ENST00000480057 FAM9AQ8IZU1 332 aaPredicted RBP17.9■□□□□ 0.46
VTI1A-204ENST00000480057 NESP48681 1621 aa17.9■□□□□ 0.46
VTI1A-204ENST00000480057 PDS5BQ9NTI5 1447 aa17.89■□□□□ 0.46
VTI1A-204ENST00000480057 CEP164Q9UPV0 1460 aa17.87■□□□□ 0.45
VTI1A-204ENST00000480057 DNMBPQ6XZF7 1577 aa17.87■□□□□ 0.45
VTI1A-204ENST00000480057 DNAJC5BQ9UF47 199 aa17.85■□□□□ 0.45
VTI1A-204ENST00000480057 CSRNP3Q8WYN3 585 aa17.84■□□□□ 0.45
VTI1A-204ENST00000480057 RUSC2Q8N2Y8 1516 aa17.82■□□□□ 0.44
VTI1A-204ENST00000480057 KIF21BO75037 1637 aa17.8■□□□□ 0.44
VTI1A-204ENST00000480057 TOPBP1Q92547 1522 aa17.78■□□□□ 0.44
VTI1A-204ENST00000480057 FGD5Q6ZNL6 1462 aa17.77■□□□□ 0.44
VTI1A-204ENST00000480057 KIF27Q86VH2 1401 aa17.76■□□□□ 0.43
VTI1A-204ENST00000480057 GOLGA3Q08378 1498 aa17.75■□□□□ 0.43
VTI1A-204ENST00000480057 KIF21AQ7Z4S6 1674 aa17.74■□□□□ 0.43
VTI1A-204ENST00000480057 URB2Q14146 1524 aaKnown RBP17.72■□□□□ 0.43
VTI1A-204ENST00000480057 TNIKQ9UKE5 1360 aa17.71■□□□□ 0.43
VTI1A-204ENST00000480057 POLA1P09884 1462 aaPredicted RBP17.69■□□□□ 0.42
VTI1A-204ENST00000480057 ERICH3Q5RHP9 1530 aa17.68■□□□□ 0.42
VTI1A-204ENST00000480057 ABCA10Q8WWZ4 1543 aa17.67■□□□□ 0.42
VTI1A-204ENST00000480057 SENP3Q9H4L4 574 aaPredicted RBP17.67■□□□□ 0.42
VTI1A-204ENST00000480057 PRXQ9BXM0 1461 aa17.67■□□□□ 0.42
VTI1A-204ENST00000480057 CUX2O14529 1486 aa17.66■□□□□ 0.42
VTI1A-204ENST00000480057 MRC2Q9UBG0 1479 aa17.66■□□□□ 0.42
VTI1A-204ENST00000480057 WDR97A6NE52 1622 aa17.61■□□□□ 0.41
VTI1A-204ENST00000480057 WDR62O43379 1518 aa17.58■□□□□ 0.41
VTI1A-204ENST00000480057 RAPGEF2Q9Y4G8 1499 aa17.58■□□□□ 0.41
VTI1A-204ENST00000480057 RAD54L2Q9Y4B4 1467 aa17.56■□□□□ 0.4
VTI1A-204ENST00000480057 CEP162Q5TB80 1403 aa17.56■□□□□ 0.4
VTI1A-204ENST00000480057 IGF1RP08069 1367 aa17.56■□□□□ 0.4
VTI1A-204ENST00000480057 UBTFP17480 764 aaKnown RBP17.55■□□□□ 0.4
VTI1A-204ENST00000480057 EHMT2Q96KQ7 1210 aa17.54■□□□□ 0.4
VTI1A-204ENST00000480057 TARBP1Q13395 1621 aaKnown RBP17.53■□□□□ 0.4
VTI1A-204ENST00000480057 ABCA5Q8WWZ7 1642 aa17.53■□□□□ 0.4
VTI1A-204ENST00000480057 CUL7Q14999 1698 aa17.52■□□□□ 0.39
VTI1A-204ENST00000480057 ERCC6Q03468 1493 aa17.51■□□□□ 0.39
VTI1A-204ENST00000480057 THOC2Q8NI27 1593 aaKnown RBP17.49■□□□□ 0.39
VTI1A-204ENST00000480057 CARMIL1Q5VZK9 1371 aa17.48■□□□□ 0.39
VTI1A-204ENST00000480057 IFT140Q96RY7 1462 aa17.47■□□□□ 0.39
VTI1A-204ENST00000480057 GAPVD1Q14C86 1478 aa17.44■□□□□ 0.38
VTI1A-204ENST00000480057 PHF23Q9BUL5 403 aaPredicted RBP17.43■□□□□ 0.38
VTI1A-204ENST00000480057 CLIP1P30622 1438 aa17.43■□□□□ 0.38
VTI1A-204ENST00000480057 TDRD9Q8NDG6 1382 aaKnown RBP17.38■□□□□ 0.37
VTI1A-204ENST00000480057 PBRM1Q86U86 1689 aa17.36■□□□□ 0.37
VTI1A-204ENST00000480057 GRIN2BQ13224 1484 aa17.33■□□□□ 0.37
VTI1A-204ENST00000480057 VPS8Q8N3P4 1428 aa17.31■□□□□ 0.36
VTI1A-204ENST00000480057 FHAD1B1AJZ9 1412 aa17.3■□□□□ 0.36
VTI1A-204ENST00000480057 CTTNBP2Q8WZ74 1663 aa17.29■□□□□ 0.36
VTI1A-204ENST00000480057 ADAMTS12P58397 1594 aa17.28■□□□□ 0.36
VTI1A-204ENST00000480057 AQRO60306 1485 aaKnown RBP eCLIP17.27■□□□□ 0.36
VTI1A-204ENST00000480057 EIF4G3O43432 1585 aaKnown RBP17.27■□□□□ 0.35
VTI1A-204ENST00000480057 TRIM26Q12899 539 aaPredicted RBP17.26■□□□□ 0.35
VTI1A-204ENST00000480057 ZNF608Q9ULD9 1512 aaPredicted RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms